pycom11g20350

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0016103
Physical Location & Seq
Reverse (-)
23287918 .. 23288594
677 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g20350.1

Sequence Viewer

Length: 363 bp
ATGAAGTTCTTGTTGGAGTTTGTCCCGTGCTGCGGGGCCACTCGCCCCACAACATCCAACAGCGAGCCCGCTCCGCTCTCAGAGGAGACGAGATCGCTGGTGAGGGCGCCCAGCCGAATACTACGCCGCAGAAGAAAGCGCAGGAGCTCTGTAAATTCGTCCGATTGGACGCCGTCGCTGAGCTCAATTTCCGAGGATAACGTTGCTGCGAAGGTGGTGGATCGAACAGCTGCGATTGAGAGAGCCGTGAAAAGGAAGAGCGGTCAGGATCGAACAAGAGTTCAGGTCCGCAGCCACGGCGAAGATTACGGGCAAGCTTCATTTGCGATTCCGGCGTTCTCTCCGACGCCTTTTACGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.37

Weight (kDa)

10.77

Isoelectric Point (pI)

82.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016103)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54585
fragaria_vesca FvH4_3g21550
malus_domestica MD03G1215100.v1.1 MD11G1229800.v1.1
prunus_persica Prupe.4G197700_v2.0.a1
pyrus_communis pycom03g16360 pycom11g20350
rosa_laevigata RLG00000033742
rosa_roxburghii Rroxscaffold_1G00043960
rosa_rugosa Rorug05G0159700
rosa_samantha Rh5AG251800 Rh5BG253300 Rh5CG286000 Rh5DG261900
rosa_wichuraiana Rw5G023190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 106
AccBSI CCGCTC 3 cut(s) 71, 76, 261
AciI CCGC 6 cut(s) 33, 69, 74, 127, 261, 289
AclI AACGTT 1 cut(s) 201
AclWI GGATC 2 cut(s) 228, 276
AcsI RAATTY 1 cut(s) 154
AcyI GRCGYC 3 cut(s) 107, 170, 347
AfiI CCNNNNNNNGG 2 cut(s) 32, 252
AjuI GAANNNNNNNTTGG 1 cut(s) 28
AluBI AGCT 4 cut(s) 147, 183, 230, 317
AluI AGCT 4 cut(s) 147, 183, 230, 317
Alw21I GWGCWC 2 cut(s) 149, 185
Alw26I GTCTC 1 cut(s) 80
AlwI GGATC 2 cut(s) 228, 276
AoxI GGCC 1 cut(s) 36
ApeKI GCWGC 4 cut(s) 30, 206, 230, 291
ApoI RAATTY 1 cut(s) 154
AspLEI GCGC 2 cut(s) 109, 141
AspS9I GGNCC 2 cut(s) 36, 286
AsuHPI GGTGA 1 cut(s) 112
AvaII GGWCC 1 cut(s) 286
BanI GGYRCC 1 cut(s) 106
BanII GRGCYC 3 cut(s) 69, 149, 185
Bbv12I GWGCWC 2 cut(s) 149, 185
BbvI GCAGC 4 cut(s) 17, 193, 217, 303
BceAI ACGGC 3 cut(s) 157, 230, 313
BcoDI GTCTC 1 cut(s) 80
BfoI RGCGCY 1 cut(s) 110
BisI GCNGC 5 cut(s) 31, 127, 207, 231, 292
BlpI GCTNAGC 1 cut(s) 179
BlsI GCNGC 5 cut(s) 32, 128, 208, 232, 293
Bme18I GGWCC 1 cut(s) 286
BmgT120I GGNCC 2 cut(s) 36, 286
BmiI GGNNCC 2 cut(s) 37, 108
Bpu1102I GCTNAGC 1 cut(s) 179
BsaHI GRCGYC 3 cut(s) 107, 170, 347
BsaJI CCNNGG 2 cut(s) 192, 295
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 252
BseDI CCNNGG 2 cut(s) 192, 295
BseGI GGATG 1 cut(s) 53
BseLI CCNNNNNNNGG 2 cut(s) 32, 252
BseMII CTCAG 2 cut(s) 93, 170
BseRI GAGGAG 1 cut(s) 98
BseXI GCAGC 4 cut(s) 17, 193, 217, 303
BseYI CCCAGC 1 cut(s) 110
BshFI GGCC 1 cut(s) 38
BshNI GGYRCC 1 cut(s) 106
BsiHKAI GWGCWC 2 cut(s) 149, 185
BsiSI CCGG 1 cut(s) 332
BslFI GGGAC 1 cut(s) 8
BslI CCNNNNNNNGG 2 cut(s) 32, 252
BsmAI GTCTC 1 cut(s) 80
BsmBI CGTCTC 1 cut(s) 80
BsmFI GGGAC 1 cut(s) 8
BsnI GGCC 1 cut(s) 38
Bsp1286I GDGCHC 3 cut(s) 69, 149, 185
Bsp143I GATC 3 cut(s) 92, 220, 268
Bsp1720I GCTNAGC 1 cut(s) 179
BspACI CCGC 6 cut(s) 33, 69, 74, 127, 261, 289
BspANI GGCC 1 cut(s) 38
BspCNI CTCAG 2 cut(s) 92, 171
BspLI GGNNCC 2 cut(s) 37, 108
BspPI GGATC 2 cut(s) 228, 276
BspQI GCTCTTC 1 cut(s) 251
BspT107I GGYRCC 1 cut(s) 106
BsrBI CCGCTC 3 cut(s) 71, 76, 261
BssECI CCNNGG 2 cut(s) 192, 295
BssMI GATC 3 cut(s) 92, 220, 268
BssNI GRCGYC 3 cut(s) 107, 170, 347
Bst6I CTCTTC 1 cut(s) 251
BstACI GRCGYC 3 cut(s) 107, 170, 347
BstC8I GCNNGC 3 cut(s) 65, 69, 315
BstDEI CTNAG 2 cut(s) 79, 179
BstDSI CCRYGG 1 cut(s) 295
BstF5I GGATG 1 cut(s) 53
BstH2I RGCGCY 1 cut(s) 110
BstHHI GCGC 2 cut(s) 109, 141
BstKTI GATC 3 cut(s) 95, 223, 271
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 3 cut(s) 92, 220, 268
BstMWI GCNNNNNNNGC 4 cut(s) 73, 297, 323, 332
BstV1I GCAGC 4 cut(s) 17, 193, 217, 303
BsuRI GGCC 1 cut(s) 38
BtgI CCRYGG 1 cut(s) 295
BtsCI GGATG 1 cut(s) 53
Cac8I GCNNGC 3 cut(s) 65, 69, 315
CfoI GCGC 2 cut(s) 109, 141
Cfr13I GGNCC 2 cut(s) 36, 286
CseI GACGC 2 cut(s) 178, 355
CviJI RGCY 9 cut(s) 38, 67, 114, 147, 183, 230, 245, 294, 317
CviKI_1 RGCY 9 cut(s) 38, 67, 114, 147, 183, 230, 245, 294, 317
DdeI CTNAG 2 cut(s) 79, 179
DinI GGCGCC 1 cut(s) 108
DpnI GATC 3 cut(s) 94, 222, 270
DpnII GATC 3 cut(s) 92, 220, 268
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
Ecl136II GAGCTC 2 cut(s) 147, 183
Eco24I GRGCYC 3 cut(s) 69, 149, 185
Eco47I GGWCC 1 cut(s) 286
Eco53kI GAGCTC 2 cut(s) 147, 183
EcoICRI GAGCTC 2 cut(s) 147, 183
EcoT38I GRGCYC 3 cut(s) 69, 149, 185
EgeI GGCGCC 1 cut(s) 108
EheI GGCGCC 1 cut(s) 108
Esp3I CGTCTC 1 cut(s) 80
FaqI GGGAC 1 cut(s) 8
FauI CCCGC 2 cut(s) 26, 76
Fnu4HI GCNGC 5 cut(s) 31, 127, 207, 231, 292
FokI GGATG 1 cut(s) 40
FriOI GRGCYC 3 cut(s) 69, 149, 185
Fsp4HI GCNGC 5 cut(s) 31, 127, 207, 231, 292
GlaI GCGC 2 cut(s) 108, 140
GluI GCNGC 5 cut(s) 31, 127, 207, 231, 292
GsaI CCCAGC 1 cut(s) 114
HaeII RGCGCY 1 cut(s) 110
HaeIII GGCC 1 cut(s) 38
HapII CCGG 1 cut(s) 332
HgaI GACGC 2 cut(s) 178, 355
HhaI GCGC 2 cut(s) 109, 141
Hin1I GRCGYC 3 cut(s) 107, 170, 347
Hin6I GCGC 2 cut(s) 107, 139
HinP1I GCGC 2 cut(s) 107, 139
HindIII AAGCTT 1 cut(s) 315
HinfI GANTC 1 cut(s) 328
HpaII CCGG 1 cut(s) 332
HphI GGTGA 1 cut(s) 112
Hpy188I TCNGA 4 cut(s) 82, 163, 193, 345
Hpy188III TCNNGA 1 cut(s) 266
Hpy99I CGWCG 2 cut(s) 178, 349
HpyAV CCTTC 1 cut(s) 205
HpyCH4IV ACGT 2 cut(s) 201, 356
HpyF10VI GCNNNNNNNGC 4 cut(s) 73, 297, 323, 332
HpyF3I CTNAG 2 cut(s) 79, 179
HpySE526I ACGT 2 cut(s) 201, 356
Hsp92I GRCGYC 3 cut(s) 107, 170, 347
HspAI GCGC 2 cut(s) 107, 139
KasI GGCGCC 1 cut(s) 106
Kzo9I GATC 3 cut(s) 92, 220, 268
LguI GCTCTTC 1 cut(s) 251
LmnI GCTCC 2 cut(s) 76, 144
LpnPI CCDG 6 cut(s) 83, 124, 127, 251, 269, 345
Lsp1109I GCAGC 4 cut(s) 17, 193, 217, 303
MaeII ACGT 2 cut(s) 201, 356
MalI GATC 3 cut(s) 94, 222, 270
MbiI CCGCTC 3 cut(s) 71, 76, 261
MboI GATC 3 cut(s) 92, 220, 268
MboII GAAGA 3 cut(s) 144, 268, 314
MhlI GDGCHC 3 cut(s) 69, 149, 185
MluCI AATT 2 cut(s) 154, 186
Mly113I GGCGCC 1 cut(s) 107
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 3 cut(s) 76, 96, 187
MspA1I CMGCKG 1 cut(s) 230
MspI CCGG 1 cut(s) 332
MwoI GCNNNNNNNGC 4 cut(s) 73, 297, 323, 332
NarI GGCGCC 1 cut(s) 107
NdeII GATC 3 cut(s) 92, 220, 268
NlaIV GGNNCC 2 cut(s) 37, 108
PciSI GCTCTTC 1 cut(s) 251
PcsI WCGNNNNNNNCGW 1 cut(s) 353
PfeI GAWTC 1 cut(s) 328
PflFI GACNNNGTC 1 cut(s) 172
PkrI GCNGC 5 cut(s) 32, 128, 208, 232, 293
PluTI GGCGCC 1 cut(s) 110
Psp124BI GAGCTC 2 cut(s) 149, 185
Psp1406I AACGTT 1 cut(s) 201
PspFI CCCAGC 1 cut(s) 110
PspN4I GGNNCC 2 cut(s) 37, 108
PspPI GGNCC 2 cut(s) 36, 286
PsyI GACNNNGTC 1 cut(s) 172
PvuII CAGCTG 1 cut(s) 230
SacI GAGCTC 2 cut(s) 149, 185
SapI GCTCTTC 1 cut(s) 251
SatI GCNGC 5 cut(s) 31, 127, 207, 231, 292
Sau3AI GATC 3 cut(s) 92, 220, 268
Sau96I GGNCC 2 cut(s) 36, 286
SduI GDGCHC 3 cut(s) 69, 149, 185
SetI ASST 8 cut(s) 149, 185, 204, 216, 232, 288, 319, 359
SfoI GGCGCC 1 cut(s) 108
SinI GGWCC 1 cut(s) 286
Sse9I AATT 2 cut(s) 154, 186
SsiI CCGC 6 cut(s) 33, 69, 74, 127, 261, 289
SspDI GGCGCC 1 cut(s) 106
SstI GAGCTC 2 cut(s) 149, 185
TaiI ACGT 2 cut(s) 204, 359
TaqI TCGA 2 cut(s) 223, 271
TasI AATT 2 cut(s) 154, 186
TauI GCSGC 1 cut(s) 129
TfiI GAWTC 1 cut(s) 328
TseI GCWGC 4 cut(s) 30, 206, 230, 291
TspDTI ATGAA 2 cut(s) 17, 309
Tth111I GACNNNGTC 1 cut(s) 172
VpaK11BI GGWCC 1 cut(s) 286
XapI RAATTY 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.