AT5G55660

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010234
Physical Location & Seq
Forward (+)
22538556 .. 22543474
4919 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G55660.1

Sequence Viewer

Length: 2337 bp
ATGGGGGAAGAAGATACAAAAGTCATTGTGGAGCCAACGGCAAATGGGACTAGCTCTCTTCAAAAGACATCAGATGCAATCAGTGGAAAGGAAGTGCAGGAGAATGCTAGTGGCAAGGAAGTGCAGGAGAGTAAGAAAGAAGAGGATACTGGACTCGAGAAAATGGAGATAGATGATGAGGGTAAGCAACATGAAGGAGAAAGTGAGACAGGAGATAAAGAGGTGGAGGTTACAGAAGAAGAAAAGAAAGATGTCGGTGAAGACAAGGAACAACCAGAAGCTGATAAAATGGATGAAGACACAGATGACAAGAACTTGAAAGCTGATGATGGTGTTTCTGGCGTTGCTACTGAGGAAGATGCTGTAATGAAGGAAAGTGTGGAGTCTGCTGACAATAAAGATGCCGAAAATCCAGAAGGAGAGCAAGAGAAAGAATCAAAGGAGGAGAAACTGGAAGGAGGGAAAGCAAATGGAAACGAAGAAGGGGATACGGAAGAGAAGTTGGTTGGTGGAGACAAAGGGGACGATGTTGATGAGGCTGAAAAGGTAGAGAATGTGGATGAAGATGACAAAGAAGAGGCACTGAAGGAGAAGAATGAGGCCGAACTGGCTGAAGAGGAGGAAACAAATAAAGGAGAGGAAGTGAAGGAAGCAAACAAAGAAGATGATGTGGAGGCAGACACTAAGGTCGCTGAGCCAGAAGTGGAAGACAAAAAAACGGAGAGTAAGGACGAGAATGAAGATAAAGAAGAAGAGAAGGAAGATGAGAAAGAAGAGAGTATGGATGATAAGGAAGATGAAAAGGAAGAGAGCAATGATGATGATAAGGAAGATGAAAAAGAAGAGAGCAATGATGATAAGGAAGACAAAAAAGAAGATATCAAGAAGTCTAACAAGCGAGGGAAAGGGAAGACTGAGAAGACTCGCGGGAAGACAAAGAGTGATGAAGAAAAGAAGGATATAGAACCTAAGACTCCTTTTTTCTCTGATCGCCCTGTCCGTGAGCGAAAGTCTGTTGAAAGGCTTGTTGCGGTGGTTGATAAAGATTCTTCAAGGGAATTCCATGTTGAAAAGGGAAAAGGGACACCTCTCAAAGATATTCCCAATGTTGCTTACAAGGTATCAAGGAAGAAGTCTGATGAAGTTTTCAAGCAGTTACACACAATTCTATTCGGTGGGAAGAGAGTAAAAGCTACTCAGCTCAAGGCACACATATTACGCTTTTCTGGTTACAAATGGCAAGGAGATGAGGAAAAGGCAAAATTGAAAGTCAAAGAAAAGTTTGAGAAAATCAACAAAGAAAAATTGCTGGAGTTTTGCGATTTATTTGACATATCAGTTGCTAAGGCTACCACAAAGAAGGAAGATATTGTGACAAAGCTGGTTGAGTTTTTGGAGAAACCTCATGCAACAACTGATGTTCTAGTCAATGAGAAAGAGAAGGGAGTGAAGCGCAAAAGAACTCCTAAGAAAAGTTCACCTGCAGCTGGAAGTTCATCTTCAAAACGATCAGCAAAGAGCCAAAAAAAGACCGAGGAAGCAACAAGGACTAACAAAAAGAGTGTAGCTCATTCTGATGATGAGTCTGAGGAAGAGAAAGAGGACGACGAAGAAGAAGAGAAAGAGCAGGAGGTTGAGGAGGAAGAGGAGGAGAATGAAAATGGGATTCCTGATAAATCTGAGGACGAGGCTCCTCAGCTTTCTGAAAGTGAGGAGAATGTTGAATCCGAGGAGGAGTCAGAGGAAGAAACTAAAAAGAAGAAACGTGGTTCTAGGACATCATCTGATAAGAAAGAATCAGCAGGGAAATCCAGAAGCAAGAAAACTGCAGTCCCTACGAAATCCAGTCCACCAAAGAAAGCTACTCAAAAGCGCTCAGCAGGTAAACGGAAGAAGAGTGATGACGACAGTGATACAAGTCCAAAGGCATCTTCTAAGAGGAAGAAGACTGAAAAACCGGCCAAGGAGCAGGCCGCAGCCCCTTTAAAATCTGTATCAAAAGAAAAGCCAGTAATAGGAAAGAGAGGCGGAAAAGGGAAAGACAAAAACAAGGAGCCTAGCGATGAAGAATTGAAAACTGCAATTATTGATATCTTGAAAGGGGTGGACTTCAACACGGCCACTTTCACTGACATCCTCAAGCGACTAGATGCTAAGTTCAACATCAGTCTCGCCTCAAAAAAATCATCTATAAAGCGGATGATCCAAGATGAGCTAACTAAGCTAGCAGATGAAGCCGAGGATGAGGAAGGAGAAGAAGAGGATGCTGAGCATGAGGAAGAAGAAGAGAAAGAGAAAGCTAAAGGATCGGGTGGTGGAGAGGAGGTTAAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DEK_C

Protein Analysis

778

Amino Acids

87.21

Weight (kDa)

4.74

Isoelectric Point (pI)

54.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEK_C PF08766 686 - 739 5.2e-14 DEK C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010234)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26630 AT4G26630 AT5G55660
fragaria_vesca FvH4_3g29362
malus_domestica MD03G1183500.v1.1 MD11G1200600.v1.1
prunus_persica Prupe.4G242600_v2.0.a1
pyrus_communis pycom03g13710 pycom11g17300
rosa_chinensis RchiOBHm_Chr5g0053741
rosa_laevigata RLG00000034900
rosa_multiflora Rmu_sc0001759.1_g000043
rosa_roxburghii Rroxscaffold_1G00026850
rosa_rugosa Rorug05G0281900 Rorug05G0282000 Rorug05G0282100
rosa_samantha Rh5AG352800 Rh5BG364500 Rh5CG389400 Rh5DG379300
rosa_wichuraiana Rw5G033330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1489
AasI GACNNNNNNGTC 1 cut(s) 686
Acc36I ACCTGC 2 cut(s) 1489, 1871
AccII CGCG 1 cut(s) 927
AciI CCGC 5 cut(s) 927, 1031, 1974, 2028, 2197
AclWI GGATC 2 cut(s) 2197, 2314
AcoI YGGCCR 2 cut(s) 1959, 2118
AcsI RAATTY 1 cut(s) 1058
AcuI CTGAAG 2 cut(s) 605, 633
AfeI AGCGCT 1 cut(s) 1874
AfiI CCNNNNNNNGG 2 cut(s) 1487, 2015
AjuI GAANNNNNNNTTGG 2 cut(s) 1915, 1947
Alw26I GTCTC 3 cut(s) 200, 507, 2174
AlwI GGATC 2 cut(s) 2197, 2314
AlwNI CAGNNNCTG 1 cut(s) 281
Ama87I CYCGRG 1 cut(s) 155
Aor51HI AGCGCT 1 cut(s) 1874
AoxI GGCC 4 cut(s) 600, 1959, 1971, 2118
ApeKI GCWGC 2 cut(s) 1484, 1976
ApoI RAATTY 1 cut(s) 1058
AspLEI GCGC 2 cut(s) 1455, 1875
AsuHPI GGTGA 2 cut(s) 269, 1470
AsuNHI GCTAGC 1 cut(s) 2224
AvaI CYCGRG 1 cut(s) 155
BaeI ACNNNNGTAYC 1 cut(s) 39
BbsI GAAGAC 8 cut(s) 267, 303, 714, 870, 917, 926, 938, 1952
BbvCI CCTCAGC 1 cut(s) 1695
BbvI GCAGC 2 cut(s) 1496, 1988
BccI CCATC 1 cut(s) 323
BceAI ACGGC 2 cut(s) 54, 2133
BciVI GTATCC 2 cut(s) 139, 481
BcoDI GTCTC 3 cut(s) 200, 507, 2174
BfaI CTAG 7 cut(s) 51, 108, 1424, 1773, 2058, 2147, 2225
BfmI CTRYAG 2 cut(s) 1482, 1827
BfoI RGCGCY 1 cut(s) 1876
BfuAI ACCTGC 2 cut(s) 1489, 1871
BfuI GTATCC 2 cut(s) 139, 481
BglI GCCNNNNNGGC 1 cut(s) 608
BisI GCNGC 3 cut(s) 1485, 1974, 1977
BlpI GCTNAGC 3 cut(s) 693, 1876, 2268
BlsI GCNGC 3 cut(s) 1486, 1975, 1978
BmeT110I CYCGRG 1 cut(s) 155
BmiI GGNNCC 3 cut(s) 33, 1692, 2055
BmsI GCATC 6 cut(s) 64, 349, 391, 1937, 2140, 2254
BmtI GCTAGC 1 cut(s) 2228
BpiI GAAGAC 8 cut(s) 267, 303, 714, 870, 917, 926, 938, 1952
BplI GAGNNNNNCTC 2 cut(s) 1552, 1584
BpmI CTGGAG 1 cut(s) 1331
Bpu10I CCTNAGC 2 cut(s) 1344, 1695
Bpu1102I GCTNAGC 3 cut(s) 693, 1876, 2268
BpuEI CTTGAG 2 cut(s) 1187, 2123
BsaJI CCNNGG 4 cut(s) 1533, 1728, 1962, 2238
BsaXI ACNNNNNCTCC 3 cut(s) 627, 657, 2310
Bsc4I CCNNNNNNNGG 2 cut(s) 1487, 2015
Bse118I RCCGGY 1 cut(s) 1957
Bse1I ACTGG 5 cut(s) 154, 456, 612, 1845, 2009
Bse3DI GCAATG 2 cut(s) 820, 856
BseDI CCNNGG 4 cut(s) 1533, 1728, 1962, 2238
BseGI GGATG 7 cut(s) 298, 565, 790, 2133, 2205, 2248, 2269
BseLI CCNNNNNNNGG 2 cut(s) 1487, 2015
BseMI GCAATG 2 cut(s) 820, 856
BseMII CTCAG 9 cut(s) 342, 684, 906, 1211, 1578, 1671, 1709, 1890, 2259
BseNI ACTGG 5 cut(s) 154, 456, 612, 1845, 2009
BseXI GCAGC 2 cut(s) 1496, 1988
BsgI GTGCAG 2 cut(s) 116, 143
Bsh1236I CGCG 1 cut(s) 927
BshFI GGCC 4 cut(s) 602, 1961, 1973, 2120
BsiHKCI CYCGRG 1 cut(s) 155
BsiSI CCGG 1 cut(s) 1958
BslFI GGGAC 4 cut(s) 61, 536, 1096, 1817
BslI CCNNNNNNNGG 2 cut(s) 1487, 2015
BsmAI GTCTC 3 cut(s) 200, 507, 2174
BsmFI GGGAC 4 cut(s) 61, 536, 1096, 1817
BsmI GAATGC 1 cut(s) 109
BsnI GGCC 4 cut(s) 602, 1961, 1973, 2120
BsoBI CYCGRG 1 cut(s) 155
Bsp143I GATC 4 cut(s) 988, 1508, 2202, 2306
Bsp1720I GCTNAGC 3 cut(s) 693, 1876, 2268
BspACI CCGC 5 cut(s) 927, 1031, 1974, 2028, 2197
BspANI GGCC 4 cut(s) 602, 1961, 1973, 2120
BspCNI CTCAG 9 cut(s) 343, 685, 907, 1210, 1579, 1672, 1708, 1889, 2260
BspFNI CGCG 1 cut(s) 927
BspLI GGNNCC 3 cut(s) 33, 1692, 2055
BspMAI CTGCAG 2 cut(s) 1486, 1831
BspMI ACCTGC 2 cut(s) 1489, 1871
BspOI GCTAGC 1 cut(s) 2228
BspPI GGATC 2 cut(s) 2197, 2314
BsrDI GCAATG 2 cut(s) 820, 856
BsrFI RCCGGY 1 cut(s) 1957
BsrI ACTGG 5 cut(s) 154, 456, 612, 1845, 2009
BssAI RCCGGY 1 cut(s) 1957
BssECI CCNNGG 4 cut(s) 1533, 1728, 1962, 2238
BssMI GATC 4 cut(s) 988, 1508, 2202, 2306
BssT1I CCWWGG 1 cut(s) 1962
Bst4CI ACNGT 1 cut(s) 1910
BstC8I GCNNGC 2 cut(s) 1971, 2226
BstF5I GGATG 7 cut(s) 298, 565, 790, 2133, 2205, 2248, 2269
BstFNI CGCG 1 cut(s) 927
BstH2I RGCGCY 1 cut(s) 1876
BstHHI GCGC 2 cut(s) 1455, 1875
BstKTI GATC 4 cut(s) 991, 1511, 2205, 2309
BstMAI GTCTC 3 cut(s) 200, 507, 2174
BstMBI GATC 4 cut(s) 988, 1508, 2202, 2306
BstMWI GCNNNNNNNGC 3 cut(s) 608, 2221, 2234
BstSFI CTRYAG 2 cut(s) 1482, 1827
BstUI CGCG 1 cut(s) 927
BstV1I GCAGC 2 cut(s) 1496, 1988
BstV2I GAAGAC 8 cut(s) 267, 303, 714, 870, 917, 926, 938, 1952
BsuI GTATCC 2 cut(s) 139, 481
BsuRI GGCC 4 cut(s) 602, 1961, 1973, 2120
BtgZI GCGATG 1 cut(s) 2076
BtsCI GGATG 7 cut(s) 298, 565, 790, 2133, 2205, 2248, 2269
BtsIMutI CAGTG 4 cut(s) 88, 581, 1915, 2127
BveI ACCTGC 2 cut(s) 1489, 1871
Cac8I GCNNGC 2 cut(s) 1971, 2226
CaiI CAGNNNCTG 1 cut(s) 281
CfoI GCGC 2 cut(s) 1455, 1875
Cfr10I RCCGGY 1 cut(s) 1957
CviAII CATG 4 cut(s) 191, 1064, 1406, 2273
DpnI GATC 4 cut(s) 990, 1510, 2204, 2308
DpnII GATC 4 cut(s) 988, 1508, 2202, 2306
DraI TTTAAA 1 cut(s) 1986
DrdI GACNNNNNNGTC 1 cut(s) 686
DseDI GACNNNNNNGTC 1 cut(s) 686
EaeI YGGCCR 2 cut(s) 1959, 2118
EciI GGCGGA 1 cut(s) 2043
Eco130I CCWWGG 1 cut(s) 1962
Eco32I GATATC 2 cut(s) 880, 2092
Eco47III AGCGCT 1 cut(s) 1874
Eco57I CTGAAG 2 cut(s) 605, 633
Eco88I CYCGRG 1 cut(s) 155
EcoRI GAATTC 1 cut(s) 1058
EcoRV GATATC 2 cut(s) 880, 2092
EcoT14I CCWWGG 1 cut(s) 1962
ErhI CCWWGG 1 cut(s) 1962
FaeI CATG 4 cut(s) 194, 1067, 1409, 2276
FaiI YATR 9 cut(s) 192, 782, 962, 1065, 1214, 1334, 1407, 2192, 2274
FalI AAGNNNNNCTT 2 cut(s) 1483, 1515
FaqI GGGAC 4 cut(s) 61, 536, 1096, 1817
FatI CATG 4 cut(s) 190, 1063, 1405, 2272
FauI CCCGC 1 cut(s) 920
Fnu4HI GCNGC 3 cut(s) 1485, 1974, 1977
FokI GGATG 7 cut(s) 305, 572, 797, 2120, 2212, 2255, 2276
Fsp4HI GCNGC 3 cut(s) 1485, 1974, 1977
FspBI CTAG 7 cut(s) 51, 108, 1424, 1773, 2058, 2147, 2225
GlaI GCGC 2 cut(s) 1454, 1874
GluI GCNGC 3 cut(s) 1485, 1974, 1977
GsuI CTGGAG 1 cut(s) 1331
HaeII RGCGCY 1 cut(s) 1876
HaeIII GGCC 4 cut(s) 602, 1961, 1973, 2120
HapII CCGG 1 cut(s) 1958
HhaI GCGC 2 cut(s) 1455, 1875
Hin1II CATG 4 cut(s) 194, 1067, 1409, 2276
Hin6I GCGC 2 cut(s) 1453, 1873
HinP1I GCGC 2 cut(s) 1453, 1873
HindIII AAGCTT 1 cut(s) 2331
HpaII CCGG 1 cut(s) 1958
HphI GGTGA 2 cut(s) 269, 1470
Hpy166II GTNNAC 4 cut(s) 1478, 1850, 1886, 2107
Hpy188III TCNNGA 6 cut(s) 157, 413, 883, 1670, 1812, 2095
Hpy8I GTNNAC 4 cut(s) 1478, 1850, 1886, 2107
Hpy99I CGWCG 1 cut(s) 1610
HpyCH4III ACNGT 1 cut(s) 1910
HpyCH4IV ACGT 1 cut(s) 1765
HpyCH4V TGCA 7 cut(s) 77, 97, 124, 1409, 1484, 1829, 2081
HpyF10VI GCNNNNNNNGC 3 cut(s) 608, 2221, 2234
HpySE526I ACGT 1 cut(s) 1765
Hsp92II CATG 4 cut(s) 194, 1067, 1409, 2276
HspAI GCGC 2 cut(s) 1453, 1873
Kzo9I GATC 4 cut(s) 988, 1508, 2202, 2306
LmnI GCTCC 4 cut(s) 31, 1696, 1966, 2053
Lsp1109I GCAGC 2 cut(s) 1496, 1988
LweI GCATC 6 cut(s) 64, 349, 391, 1937, 2140, 2254
MaeI CTAG 7 cut(s) 51, 108, 1424, 1773, 2058, 2147, 2225
MaeII ACGT 1 cut(s) 1765
MaeIII GTNAC 4 cut(s) 229, 1155, 1229, 1372
MalI GATC 4 cut(s) 990, 1510, 2204, 2308
MboI GATC 4 cut(s) 988, 1508, 2202, 2306
MluCI AATT 6 cut(s) 1058, 1164, 1262, 1304, 2069, 2082
MlyI GAGTC 6 cut(s) 147, 392, 916, 967, 1592, 1745
MseI TTAA 3 cut(s) 1985, 2328, 2335
MslI CAYNNNNRTG 1 cut(s) 1575
MspA1I CMGCKG 1 cut(s) 1487
MspI CCGG 1 cut(s) 1958
Mva1269I GAATGC 1 cut(s) 109
MvnI CGCG 1 cut(s) 927
MwoI GCNNNNNNNGC 3 cut(s) 608, 2221, 2234
NdeII GATC 4 cut(s) 988, 1508, 2202, 2306
NheI GCTAGC 1 cut(s) 2224
NlaIII CATG 4 cut(s) 194, 1067, 1409, 2276
NlaIV GGNNCC 3 cut(s) 33, 1692, 2055
NmeAIII GCCGAG 1 cut(s) 2263
NmuCI GTSAC 1 cut(s) 1372
PaeR7I CTCGAG 1 cut(s) 155
PaqCI CACCTGC 1 cut(s) 1489
PcsI WCGNNNNNNNCGW 1 cut(s) 997
PctI GAATGC 1 cut(s) 109
PfeI GAWTC 5 cut(s) 434, 1046, 1666, 1724, 1796
PkrI GCNGC 3 cut(s) 1486, 1975, 1978
PleI GAGTC 6 cut(s) 147, 391, 916, 967, 1591, 1744
PpsI GAGTC 6 cut(s) 147, 391, 916, 967, 1591, 1744
PspN4I GGNNCC 3 cut(s) 33, 1692, 2055
PstI CTGCAG 2 cut(s) 1486, 1831
PstNI CAGNNNCTG 1 cut(s) 281
PvuII CAGCTG 1 cut(s) 1487
RseI CAYNNNNRTG 1 cut(s) 1575
SaqAI TTAA 3 cut(s) 1985, 2328, 2335
SatI GCNGC 3 cut(s) 1485, 1974, 1977
Sau3AI GATC 4 cut(s) 988, 1508, 2202, 2306
SchI GAGTC 6 cut(s) 147, 392, 916, 967, 1592, 1745
SfaNI GCATC 6 cut(s) 64, 349, 391, 1937, 2140, 2254
SfcI CTRYAG 2 cut(s) 1482, 1827
Sfr274I CTCGAG 1 cut(s) 155
SlaI CTCGAG 1 cut(s) 155
SmiMI CAYNNNNRTG 1 cut(s) 1575
SmlI CTYRAG 3 cut(s) 155, 1202, 2138
SmoI CTYRAG 3 cut(s) 155, 1202, 2138
Sse9I AATT 6 cut(s) 1058, 1164, 1262, 1304, 2069, 2082
SsiI CCGC 5 cut(s) 927, 1031, 1974, 2028, 2197
SspMI CTAG 7 cut(s) 51, 108, 1424, 1773, 2058, 2147, 2225
StyI CCWWGG 1 cut(s) 1962
TaaI ACNGT 1 cut(s) 1910
TaiI ACGT 1 cut(s) 1768
TaqI TCGA 1 cut(s) 156
TaqII GACCGA 1 cut(s) 1547
TasI AATT 6 cut(s) 1058, 1164, 1262, 1304, 2069, 2082
TauI GCSGC 1 cut(s) 1976
TfiI GAWTC 5 cut(s) 434, 1046, 1666, 1724, 1796
Tru1I TTAA 3 cut(s) 1985, 2328, 2335
Tru9I TTAA 3 cut(s) 1985, 2328, 2335
TscAI CASTG 4 cut(s) 88, 588, 1915, 2134
TseFI GTSAC 1 cut(s) 1372
TseI GCWGC 2 cut(s) 1484, 1976
Tsp45I GTSAC 1 cut(s) 1372
TspGWI ACGGA 4 cut(s) 506, 734, 989, 1903
TspRI CASTG 4 cut(s) 88, 588, 1915, 2134
XapI RAATTY 1 cut(s) 1058
XhoI CTCGAG 1 cut(s) 155
XspI CTAG 7 cut(s) 51, 108, 1424, 1773, 2058, 2147, 2225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.