Rorug05G0282100

DEK C terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0010234
Physical Location & Seq
Forward (+)
32260070 .. 32261229
1160 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0282100.1

Sequence Viewer

Length: 777 bp
ATGAAAATCCATCAATTTGGAGATCAACGAAAGGCAGTGCCTGAGTCTACTTGGGTTCTCCATAAAATCTCCCCTTGGTGGAACTCTTTCAATCATCTTCAGATACCCTTTGGAATCTTGGGAAAGTTGGTGGTGCTTGGTGGTACTTCTCAATCAGAGAAAGGTAGGCAACCACCAATGGAGGATATGTATCTATCAAGGCAGGGAAGTGGAGTTTGGAGGTCTTTGAGAGATGGAGATTTTGAGGAAGAAGATGTTTGGAATGTTTTAAGAGATAGAAAAACTTCAAACACCATGACTGGTAGATCCAAAGAATCCTCAGTTTCTGTTCCGAGACGCCTCCCAACCGCTTCAAGGGTGATACCAAGAGCTAGCAGCCACAATTATGGTAGTGGAAGTAGCTGTAGCAGTAGCAACAACACTCATGAAGCCAAAATTGTGCAACAATCTGCACCTGTTCACATTCCCAACTGGTCAAAAGCATATGGCCAGGAATCAAAGAAGGGTTTCAAAAATAGTTCATGGCATAATGAGTGTGACGATGTTGATGATGATGATGAAGACGGGGATCTTGACGATGAGGATGAAGAGGAGGAGGAGGAGGATGACTACGATTCAAAGGAACCCCCACATGAATTTATTGCCAGGAGGCTTGCAAGAAGTCAGATTTCTTCTTTTTCAGTTTGTGAAGGTGCTGGGAGGACCCTAAAAGGGAGGGACCTCAGCAAAGTGAGGAATGCTGTTTTGATAAAAACTGGTTTCCTTGAATCATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DEK_C

Protein Analysis

258

Amino Acids

29.1

Weight (kDa)

5.45

Isoelectric Point (pI)

66.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 80 - 256 2.4e-34 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010234)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26630 AT4G26630 AT5G55660
fragaria_vesca FvH4_3g29362
malus_domestica MD03G1183500.v1.1 MD11G1200600.v1.1
prunus_persica Prupe.4G242600_v2.0.a1
pyrus_communis pycom03g13710 pycom11g17300
rosa_chinensis RchiOBHm_Chr5g0053741
rosa_laevigata RLG00000034900
rosa_multiflora Rmu_sc0001759.1_g000043
rosa_roxburghii Rroxscaffold_1G00026850
rosa_rugosa Rorug05G0281900 Rorug05G0282000 Rorug05G0282100
rosa_samantha Rh5AG352800 Rh5BG364500 Rh5CG389400 Rh5DG379300
rosa_wichuraiana Rw5G033330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 47
AciI CCGC 1 cut(s) 348
AclWI GGATC 2 cut(s) 300, 576
AcoI YGGCCR 1 cut(s) 487
AcsI RAATTY 1 cut(s) 635
AcuI CTGAAG 1 cut(s) 83
AcyI GRCGYC 1 cut(s) 337
AfaI GTAC 1 cut(s) 145
AfiI CCNNNNNNNGG 3 cut(s) 78, 354, 711
AgsI TTSAA 6 cut(s) 91, 288, 354, 511, 618, 767
AjnI CCWGG 2 cut(s) 489, 644
AjuI GAANNNNNNNTTGG 2 cut(s) 199, 231
AluBI AGCT 2 cut(s) 371, 402
AluI AGCT 2 cut(s) 371, 402
Alw26I GTCTC 1 cut(s) 328
AlwI GGATC 2 cut(s) 300, 576
AlwNI CAGNNNCTG 2 cut(s) 41, 326
AoxI GGCC 1 cut(s) 487
ApeKI GCWGC 1 cut(s) 375
ApoI RAATTY 1 cut(s) 635
Asp700I GAANNNNTTC 3 cut(s) 86, 283, 506
AspS9I GGNCC 2 cut(s) 702, 718
AsuHPI GGTGA 1 cut(s) 370
AsuNHI GCTAGC 1 cut(s) 371
AvaII GGWCC 2 cut(s) 702, 718
BalI TGGCCA 1 cut(s) 489
BbsI GAAGAC 1 cut(s) 567
BbvCI CCTCAGC 1 cut(s) 722
BbvI GCAGC 1 cut(s) 387
BccI CCATC 2 cut(s) 18, 227
BciT130I CCWGG 2 cut(s) 491, 646
BcoDI GTCTC 1 cut(s) 328
BfaI CTAG 1 cut(s) 372
BfmI CTRYAG 1 cut(s) 403
BisI GCNGC 1 cut(s) 376
BlsI GCNGC 1 cut(s) 377
Bme1390I CCNGG 2 cut(s) 491, 646
Bme18I GGWCC 2 cut(s) 702, 718
BmgT120I GGNCC 2 cut(s) 702, 718
BmiI GGNNCC 3 cut(s) 624, 704, 719
BmrFI CCNGG 2 cut(s) 491, 646
BmtI GCTAGC 1 cut(s) 375
BpiI GAAGAC 1 cut(s) 567
Bpu10I CCTNAGC 1 cut(s) 722
BsaBI GATNNNNATC 1 cut(s) 189
BsaHI GRCGYC 1 cut(s) 337
BsaJI CCNNGG 1 cut(s) 74
BsaXI ACNNNNNCTCC 2 cut(s) 173, 203
Bsc4I CCNNNNNNNGG 3 cut(s) 78, 354, 711
Bse1I ACTGG 3 cut(s) 304, 476, 760
Bse8I GATNNNNATC 1 cut(s) 189
BseBI CCWGG 2 cut(s) 491, 646
BseDI CCNNGG 1 cut(s) 74
BseGI GGATG 2 cut(s) 589, 610
BseJI GATNNNNATC 1 cut(s) 189
BseLI CCNNNNNNNGG 3 cut(s) 78, 354, 711
BseMII CTCAG 3 cut(s) 33, 333, 736
BseNI ACTGG 3 cut(s) 304, 476, 760
BseRI GAGGAG 4 cut(s) 605, 608, 611, 614
BseXI GCAGC 1 cut(s) 387
BseYI CCCAGC 1 cut(s) 695
BsgI GTGCAG 1 cut(s) 435
BshFI GGCC 1 cut(s) 489
BslFI GGGAC 1 cut(s) 731
BslI CCNNNNNNNGG 3 cut(s) 78, 354, 711
BsmAI GTCTC 1 cut(s) 328
BsmBI CGTCTC 1 cut(s) 328
BsmFI GGGAC 1 cut(s) 731
BsmI GAATGC 1 cut(s) 742
BsnI GGCC 1 cut(s) 489
Bsp143I GATC 3 cut(s) 22, 305, 568
BspACI CCGC 1 cut(s) 348
BspANI GGCC 1 cut(s) 489
BspCNI CTCAG 3 cut(s) 34, 332, 735
BspHI TCATGA 1 cut(s) 424
BspLI GGNNCC 3 cut(s) 624, 704, 719
BspOI GCTAGC 1 cut(s) 375
BspPI GGATC 2 cut(s) 300, 576
BsrI ACTGG 3 cut(s) 304, 476, 760
BssECI CCNNGG 1 cut(s) 74
BssMI GATC 3 cut(s) 22, 305, 568
BssNI GRCGYC 1 cut(s) 337
BssT1I CCWWGG 1 cut(s) 74
Bst2UI CCWGG 2 cut(s) 491, 646
Bst6I CTCTTC 1 cut(s) 582
BstACI GRCGYC 1 cut(s) 337
BstC8I GCNNGC 2 cut(s) 373, 654
BstDEI CTNAG 3 cut(s) 42, 319, 722
BstF5I GGATG 2 cut(s) 589, 610
BstKTI GATC 3 cut(s) 25, 308, 571
BstMAI GTCTC 1 cut(s) 328
BstMBI GATC 3 cut(s) 22, 305, 568
BstNI CCWGG 2 cut(s) 491, 646
BstSCI CCNGG 2 cut(s) 489, 644
BstSFI CTRYAG 1 cut(s) 403
BstV1I GCAGC 1 cut(s) 387
BstV2I GAAGAC 1 cut(s) 567
BstX2I RGATCY 2 cut(s) 305, 568
BstXI CCANNNNNNTGG 2 cut(s) 17, 386
BstYI RGATCY 2 cut(s) 305, 568
BsuRI GGCC 1 cut(s) 489
BtsCI GGATG 2 cut(s) 589, 610
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 42
Cac8I GCNNGC 2 cut(s) 373, 654
CaiI CAGNNNCTG 2 cut(s) 41, 326
CciI TCATGA 1 cut(s) 424
Cfr13I GGNCC 2 cut(s) 702, 718
CseI GACGC 1 cut(s) 345
Csp6I GTAC 1 cut(s) 144
CviAII CATG 4 cut(s) 295, 425, 522, 632
CviJI RGCY 6 cut(s) 371, 378, 402, 431, 489, 652
CviKI_1 RGCY 6 cut(s) 371, 378, 402, 431, 489, 652
CviQI GTAC 1 cut(s) 144
DdeI CTNAG 3 cut(s) 42, 319, 722
DpnI GATC 3 cut(s) 24, 307, 570
DpnII GATC 3 cut(s) 22, 305, 568
EaeI YGGCCR 1 cut(s) 487
Eam1104I CTCTTC 1 cut(s) 582
EarI CTCTTC 1 cut(s) 582
Eco130I CCWWGG 1 cut(s) 74
Eco47I GGWCC 2 cut(s) 702, 718
Eco57I CTGAAG 1 cut(s) 83
EcoO109I RGGNCCY 2 cut(s) 702, 718
EcoRII CCWGG 2 cut(s) 489, 644
EcoT14I CCWWGG 1 cut(s) 74
ErhI CCWWGG 1 cut(s) 74
Esp3I CGTCTC 1 cut(s) 328
FaeI CATG 4 cut(s) 298, 428, 525, 635
FaqI GGGAC 1 cut(s) 731
FatI CATG 4 cut(s) 294, 424, 521, 631
FauNDI CATATG 1 cut(s) 484
FblI GTMKAC 1 cut(s) 47
Fnu4HI GCNGC 1 cut(s) 376
FokI GGATG 2 cut(s) 596, 617
Fsp4HI GCNGC 1 cut(s) 376
FspBI CTAG 1 cut(s) 372
GluI GCNGC 1 cut(s) 376
GsaI CCCAGC 1 cut(s) 699
HaeIII GGCC 1 cut(s) 489
HgaI GACGC 1 cut(s) 345
Hin1I GRCGYC 1 cut(s) 337
Hin1II CATG 4 cut(s) 298, 428, 525, 635
HinfI GANTC 6 cut(s) 44, 114, 314, 494, 614, 767
HphI GGTGA 1 cut(s) 370
Hpy166II GTNNAC 2 cut(s) 48, 460
Hpy188I TCNGA 4 cut(s) 102, 157, 333, 666
Hpy188III TCNNGA 2 cut(s) 425, 572
Hpy8I GTNNAC 2 cut(s) 48, 460
HpyAV CCTTC 2 cut(s) 496, 683
HpyCH4V TGCA 3 cut(s) 442, 452, 656
HpyF3I CTNAG 3 cut(s) 42, 319, 722
Hsp92I GRCGYC 1 cut(s) 337
Hsp92II CATG 4 cut(s) 298, 428, 525, 635
Kzo9I GATC 3 cut(s) 22, 305, 568
Lsp1109I GCAGC 1 cut(s) 387
MaeI CTAG 1 cut(s) 372
MaeIII GTNAC 1 cut(s) 536
MalI GATC 3 cut(s) 24, 307, 570
MboI GATC 3 cut(s) 22, 305, 568
MboII GAAGA 6 cut(s) 89, 260, 263, 572, 599, 663
MflI RGATCY 2 cut(s) 305, 568
MlsI TGGCCA 1 cut(s) 489
MluCI AATT 4 cut(s) 14, 382, 435, 635
MluNI TGGCCA 1 cut(s) 489
MlyI GAGTC 1 cut(s) 53
Mox20I TGGCCA 1 cut(s) 489
MroXI GAANNNNTTC 3 cut(s) 86, 283, 506
MscI TGGCCA 1 cut(s) 489
MseI TTAA 1 cut(s) 269
MslI CAYNNNNRTG 1 cut(s) 384
Msp20I TGGCCA 1 cut(s) 489
MspR9I CCNGG 2 cut(s) 491, 646
Mva1269I GAATGC 1 cut(s) 742
MvaI CCWGG 2 cut(s) 491, 646
NdeI CATATG 1 cut(s) 484
NdeII GATC 3 cut(s) 22, 305, 568
NheI GCTAGC 1 cut(s) 371
NlaIII CATG 4 cut(s) 298, 428, 525, 635
NlaIV GGNNCC 3 cut(s) 624, 704, 719
NmuCI GTSAC 1 cut(s) 536
PagI TCATGA 1 cut(s) 424
PctI GAATGC 1 cut(s) 742
PdmI GAANNNNTTC 3 cut(s) 86, 283, 506
PfeI GAWTC 5 cut(s) 114, 314, 494, 614, 767
PkrI GCNGC 1 cut(s) 377
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
PpuMI RGGWCCY 2 cut(s) 702, 718
Psp5II RGGWCCY 2 cut(s) 702, 718
Psp6I CCWGG 2 cut(s) 489, 644
PspFI CCCAGC 1 cut(s) 695
PspGI CCWGG 2 cut(s) 489, 644
PspN4I GGNNCC 3 cut(s) 624, 704, 719
PspPI GGNCC 2 cut(s) 702, 718
PspPPI RGGWCCY 2 cut(s) 702, 718
PstNI CAGNNNCTG 2 cut(s) 41, 326
PsuI RGATCY 2 cut(s) 305, 568
RsaI GTAC 1 cut(s) 145
RsaNI GTAC 1 cut(s) 144
RseI CAYNNNNRTG 1 cut(s) 384
SaqAI TTAA 1 cut(s) 269
SatI GCNGC 1 cut(s) 376
Sau3AI GATC 3 cut(s) 22, 305, 568
Sau96I GGNCC 2 cut(s) 702, 718
SchI GAGTC 1 cut(s) 53
ScrFI CCNGG 2 cut(s) 491, 646
SetI ASST 7 cut(s) 166, 224, 373, 404, 457, 694, 723
SfcI CTRYAG 1 cut(s) 403
SinI GGWCC 2 cut(s) 702, 718
SmiMI CAYNNNNRTG 1 cut(s) 384
Sse9I AATT 4 cut(s) 14, 382, 435, 635
SsiI CCGC 1 cut(s) 348
SspMI CTAG 1 cut(s) 372
StyD4I CCNGG 2 cut(s) 489, 644
StyI CCWWGG 1 cut(s) 74
TasI AATT 4 cut(s) 14, 382, 435, 635
TfiI GAWTC 5 cut(s) 114, 314, 494, 614, 767
Tru1I TTAA 1 cut(s) 269
Tru9I TTAA 1 cut(s) 269
TscAI CASTG 1 cut(s) 42
TseFI GTSAC 1 cut(s) 536
TseI GCWGC 1 cut(s) 375
Tsp45I GTSAC 1 cut(s) 536
TspDTI ATGAA 6 cut(s) 17, 441, 510, 573, 600, 648
TspRI CASTG 1 cut(s) 42
VpaK11BI GGWCC 2 cut(s) 702, 718
XapI RAATTY 1 cut(s) 635
XmiI GTMKAC 1 cut(s) 47
XmnI GAANNNNTTC 3 cut(s) 86, 283, 506
XspI CTAG 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.