Rorug05G0282000

DEK C terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0010234
Physical Location & Seq
Forward (+)
32256222 .. 32257325
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0282000.1

Sequence Viewer

Length: 1104 bp
ATGGCTTTATCCATGTGGGTCTCTTTAAAACCTTCATTTCTGCAAAACCCAAATCCTCTTTCGCCCCAAATCTCACGCCCAACTCGTCACTCCCAATCTCCACGAACCCCAGCAATCCGCTGCGGTCTGCGTGAGCTCCGAGAGCGAATTGATTCCATTAAGAGCACCCATAAAATCACAGAGGCCATGAAGCTTGTAGCGGCTGCCAGGGTTCGAAGAGCTCAAGAAGCAGTCATCAATGGCCGACCCTTCTCTGAGACCCTTGTGGAGGTCTTATACGACATGAATGAACAGCTTCAAGGTGAAGACGTTGATATCCCTCTGACCAATGTTAGACCTGTCAAGAAAGTAGCCCTTGTGGTCATTACTAGTGATAGAGGTCTGTGTGGTGGTTTCAACAATGCATTGACTAAGAAAGCGCAGACCCGAATTGTGGAGCTGAGGAAATTTGGGTTGGAGGTGGTTCTGATCAGCGTTGGGAAGAAGGGTAACTCGTATTTTATGCGTAGGCCGGAGATTAAGGTGGATAGGTTGATGGAAGGAGGGGCGTTTCCGACGGTGAAAGAGGCTCAGGTGATTGCTGATGATGTGTTTTCGCTGTTTGTTAGCGAGGAGGTTGATAAAGTTGAGCTTGTGTACACTAAATTCGTGTCGTTTGTGAAGTCCGAGCCGGTGATTCATACATTGCTTCCATTGTCACCTAGGGGTGAGGTTGTTGATGTGAATGGGAATTGTGTTGGTGCAATGGGGGATGAGTTGTTTAGGCTGACTAGTAAGGAAGGGAAGCTGGCATTGAAGAGGGACAGTGTGAAGAAGAAAGAGAGAAAAGAAATGTCGCCGCTTATGGAATTTGAACAAGACCCTGTTCAGATTCTTGATGCCATGATGCCTCTCTACTTGAACAGTCAGATTCTGAGGGCATTGCAGGAGTCAACAGCAAGTGAGCTTGCAGCGAGAATGAATGCTATGAGTAATGCCACGGATAATGCAGTTGAGTTGAAGAAGACTCTATCGAGATCTTATAATCGAGCACGACAGGCAAAGATTACTGGGGAGTTATTGGAGATTGTTGCTGGAGCTGAGGCACTAAGAGAGTCTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DEK_C

Protein Analysis

367

Amino Acids

40.95

Weight (kDa)

9.19

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt PF00231 43 - 363 9e-94 ATP synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010234)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26630 AT4G26630 AT5G55660
fragaria_vesca FvH4_3g29362
malus_domestica MD03G1183500.v1.1 MD11G1200600.v1.1
prunus_persica Prupe.4G242600_v2.0.a1
pyrus_communis pycom03g13710 pycom11g17300
rosa_chinensis RchiOBHm_Chr5g0053741
rosa_laevigata RLG00000034900
rosa_multiflora Rmu_sc0001759.1_g000043
rosa_roxburghii Rroxscaffold_1G00026850
rosa_rugosa Rorug05G0281900 Rorug05G0282000 Rorug05G0282100
rosa_samantha Rh5AG352800 Rh5BG364500 Rh5CG389400 Rh5DG379300
rosa_wichuraiana Rw5G033330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1023
AciI CCGC 4 cut(s) 118, 123, 200, 839
AcoI YGGCCR 1 cut(s) 241
AcsI RAATTY 3 cut(s) 446, 644, 848
AfaI GTAC 1 cut(s) 638
AfiI CCNNNNNNNGG 2 cut(s) 268, 433
AgsI TTSAA 6 cut(s) 299, 397, 796, 854, 901, 1000
AhlI ACTAGT 2 cut(s) 368, 770
AjnI CCWGG 1 cut(s) 206
AjuI GAANNNNNNNTTGG 4 cut(s) 43, 75, 437, 469
AluBI AGCT 9 cut(s) 136, 193, 221, 295, 439, 631, 787, 946, 1079
AluI AGCT 9 cut(s) 136, 193, 221, 295, 439, 631, 787, 946, 1079
Alw21I GWGCWC 4 cut(s) 138, 167, 223, 1033
Alw26I GTCTC 2 cut(s) 25, 251
AlwNI CAGNNNCTG 1 cut(s) 913
AoxI GGCC 3 cut(s) 183, 241, 509
ApeKI GCWGC 3 cut(s) 120, 203, 950
ApoI RAATTY 3 cut(s) 446, 644, 848
Asp700I GAANNNNTTC 2 cut(s) 151, 294
AspA2I CCTAGG 1 cut(s) 701
AspLEI GCGC 1 cut(s) 421
AsuHPI GGTGA 6 cut(s) 314, 571, 586, 685, 690, 719
AsuII TTCGAA 1 cut(s) 214
AvrII CCTAGG 1 cut(s) 701
BanII GRGCYC 2 cut(s) 138, 223
BbsI GAAGAC 2 cut(s) 312, 1010
Bbv12I GWGCWC 4 cut(s) 138, 167, 223, 1033
BbvCI CCTCAGC 2 cut(s) 440, 1080
BbvI GCAGC 3 cut(s) 107, 190, 962
BccI CCATC 1 cut(s) 529
BciT130I CCWGG 1 cut(s) 208
BclI TGATCA 1 cut(s) 468
BcoDI GTCTC 2 cut(s) 25, 251
BcuI ACTAGT 2 cut(s) 368, 770
BfaI CTAG 3 cut(s) 369, 702, 771
BglII AGATCT 1 cut(s) 1016
BisI GCNGC 5 cut(s) 121, 201, 204, 839, 951
BlnI CCTAGG 1 cut(s) 701
BlsI GCNGC 5 cut(s) 122, 202, 205, 840, 952
Bme1390I CCNGG 1 cut(s) 208
BmrFI CCNGG 1 cut(s) 208
BmrI ACTGGG 1 cut(s) 1059
BmsI GCATC 2 cut(s) 868, 876
BmuI ACTGGG 1 cut(s) 1059
BpiI GAAGAC 2 cut(s) 312, 1010
BpmI CTGGAG 1 cut(s) 1095
Bpu10I CCTNAGC 3 cut(s) 440, 570, 1080
Bpu14I TTCGAA 1 cut(s) 214
BpuEI CTTGAG 1 cut(s) 207
BsaI GGTCTC 2 cut(s) 25, 251
BsaJI CCNNGG 3 cut(s) 207, 701, 978
Bsc4I CCNNNNNNNGG 2 cut(s) 268, 433
Bse118I RCCGGY 1 cut(s) 670
Bse1I ACTGG 1 cut(s) 1054
Bse3DI GCAATG 3 cut(s) 683, 750, 920
BseBI CCWGG 1 cut(s) 208
BseDI CCNNGG 3 cut(s) 207, 701, 978
BseGI GGATG 1 cut(s) 757
BseLI CCNNNNNNNGG 2 cut(s) 268, 433
BseMI GCAATG 3 cut(s) 683, 750, 920
BseMII CTCAG 6 cut(s) 246, 431, 584, 905, 1071, 1089
BseNI ACTGG 1 cut(s) 1054
BseRI GAGGAG 1 cut(s) 626
BseXI GCAGC 3 cut(s) 107, 190, 962
BseYI CCCAGC 1 cut(s) 109
BshFI GGCC 3 cut(s) 185, 243, 511
BsiHKAI GWGCWC 4 cut(s) 138, 167, 223, 1033
BsiSI CCGG 2 cut(s) 512, 671
BslFI GGGAC 1 cut(s) 815
BslI CCNNNNNNNGG 2 cut(s) 268, 433
BsmAI GTCTC 2 cut(s) 25, 251
BsmFI GGGAC 1 cut(s) 815
BsmI GAATGC 1 cut(s) 967
BsnI GGCC 3 cut(s) 185, 243, 511
Bso31I GGTCTC 2 cut(s) 25, 251
Bsp119I TTCGAA 1 cut(s) 214
Bsp1286I GDGCHC 4 cut(s) 138, 167, 223, 1033
Bsp1407I TGTACA 1 cut(s) 636
Bsp143I GATC 2 cut(s) 468, 1016
BspACI CCGC 4 cut(s) 118, 123, 200, 839
BspANI GGCC 3 cut(s) 185, 243, 511
BspCNI CTCAG 6 cut(s) 247, 432, 583, 906, 1072, 1090
BspQI GCTCTTC 1 cut(s) 211
BspT104I TTCGAA 1 cut(s) 214
BspTNI GGTCTC 2 cut(s) 25, 251
BsrDI GCAATG 3 cut(s) 683, 750, 920
BsrFI RCCGGY 1 cut(s) 670
BsrGI TGTACA 1 cut(s) 636
BsrI ACTGG 1 cut(s) 1054
BssAI RCCGGY 1 cut(s) 670
BssECI CCNNGG 3 cut(s) 207, 701, 978
BssMI GATC 2 cut(s) 468, 1016
BssT1I CCWWGG 1 cut(s) 701
Bst2UI CCWGG 1 cut(s) 208
Bst4CI ACNGT 3 cut(s) 559, 806, 905
Bst6I CTCTTC 2 cut(s) 211, 791
BstAUI TGTACA 1 cut(s) 636
BstBI TTCGAA 1 cut(s) 214
BstC8I GCNNGC 2 cut(s) 789, 948
BstDEI CTNAG 8 cut(s) 255, 411, 440, 570, 914, 1080, 1088, 1098
BstDSI CCRYGG 1 cut(s) 978
BstENI CCTNNNNNAGG 1 cut(s) 266
BstF5I GGATG 1 cut(s) 757
BstHHI GCGC 1 cut(s) 421
BstKTI GATC 2 cut(s) 471, 1019
BstMAI GTCTC 2 cut(s) 25, 251
BstMBI GATC 2 cut(s) 468, 1016
BstMWI GCNNNNNNNGC 3 cut(s) 142, 227, 1037
BstNI CCWGG 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 206
BstV1I GCAGC 3 cut(s) 107, 190, 962
BstV2I GAAGAC 2 cut(s) 312, 1010
BstX2I RGATCY 1 cut(s) 1016
BstYI RGATCY 1 cut(s) 1016
BsuRI GGCC 3 cut(s) 185, 243, 511
BtgI CCRYGG 1 cut(s) 978
BtsCI GGATG 1 cut(s) 757
BtsIMutI CAGTG 1 cut(s) 811
Cac8I GCNNGC 2 cut(s) 789, 948
CaiI CAGNNNCTG 1 cut(s) 913
CfoI GCGC 1 cut(s) 421
Cfr10I RCCGGY 1 cut(s) 670
Csp6I GTAC 1 cut(s) 637
CviAII CATG 4 cut(s) 13, 187, 283, 883
CviQI GTAC 1 cut(s) 637
DdeI CTNAG 8 cut(s) 255, 411, 440, 570, 914, 1080, 1088, 1098
DpnI GATC 2 cut(s) 470, 1018
DpnII GATC 2 cut(s) 468, 1016
DraI TTTAAA 1 cut(s) 27
EaeI YGGCCR 1 cut(s) 241
Eam1104I CTCTTC 2 cut(s) 211, 791
EarI CTCTTC 2 cut(s) 211, 791
Ecl136II GAGCTC 2 cut(s) 136, 221
Eco130I CCWWGG 1 cut(s) 701
Eco24I GRGCYC 2 cut(s) 138, 223
Eco31I GGTCTC 2 cut(s) 25, 251
Eco32I GATATC 1 cut(s) 316
Eco53kI GAGCTC 2 cut(s) 136, 221
EcoICRI GAGCTC 2 cut(s) 136, 221
EcoNI CCTNNNNNAGG 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 206
EcoRV GATATC 1 cut(s) 316
EcoT14I CCWWGG 1 cut(s) 701
EcoT22I ATGCAT 1 cut(s) 406
EcoT38I GRGCYC 2 cut(s) 138, 223
ErhI CCWWGG 1 cut(s) 701
FaeI CATG 4 cut(s) 16, 190, 286, 886
FalI AAGNNNNNCTT 4 cut(s) 339, 371, 615, 647
FaqI GGGAC 1 cut(s) 815
FatI CATG 4 cut(s) 12, 186, 282, 882
FbaI TGATCA 1 cut(s) 468
Fnu4HI GCNGC 5 cut(s) 121, 201, 204, 839, 951
FokI GGATG 1 cut(s) 764
FriOI GRGCYC 2 cut(s) 138, 223
Fsp4HI GCNGC 5 cut(s) 121, 201, 204, 839, 951
FspBI CTAG 3 cut(s) 369, 702, 771
GlaI GCGC 1 cut(s) 420
GluI GCNGC 5 cut(s) 121, 201, 204, 839, 951
GsaI CCCAGC 1 cut(s) 113
GsuI CTGGAG 1 cut(s) 1095
HaeIII GGCC 3 cut(s) 185, 243, 511
HapII CCGG 2 cut(s) 512, 671
HhaI GCGC 1 cut(s) 421
Hin1II CATG 4 cut(s) 16, 190, 286, 886
Hin6I GCGC 1 cut(s) 419
HinP1I GCGC 1 cut(s) 419
HincII GTYRAC 1 cut(s) 933
HindII GTYRAC 1 cut(s) 933
HindIII AAGCTT 1 cut(s) 191
HinfI GANTC 7 cut(s) 152, 676, 871, 910, 929, 1006, 1094
HpaII CCGG 2 cut(s) 512, 671
HphI GGTGA 6 cut(s) 314, 571, 586, 685, 690, 719
Hpy166II GTNNAC 3 cut(s) 637, 639, 933
Hpy188III TCNNGA 4 cut(s) 224, 343, 875, 1014
Hpy8I GTNNAC 3 cut(s) 637, 639, 933
Hpy99I CGWCG 1 cut(s) 559
HpyAV CCTTC 5 cut(s) 42, 259, 478, 533, 773
HpyCH4III ACNGT 3 cut(s) 559, 806, 905
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 6 cut(s) 43, 404, 743, 925, 950, 989
HpyF10VI GCNNNNNNNGC 3 cut(s) 142, 227, 1037
HpyF3I CTNAG 8 cut(s) 255, 411, 440, 570, 914, 1080, 1088, 1098
HpySE526I ACGT 1 cut(s) 309
Hsp92II CATG 4 cut(s) 16, 190, 286, 886
HspAI GCGC 1 cut(s) 419
Ksp22I TGATCA 1 cut(s) 468
Kzo9I GATC 2 cut(s) 468, 1016
LguI GCTCTTC 1 cut(s) 211
LmnI GCTCC 3 cut(s) 141, 436, 1076
Lsp1109I GCAGC 3 cut(s) 107, 190, 962
LweI GCATC 2 cut(s) 868, 876
MaeI CTAG 3 cut(s) 369, 702, 771
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 3 cut(s) 86, 488, 696
MalI GATC 2 cut(s) 470, 1018
MboI GATC 2 cut(s) 468, 1016
MboII GAAGA 8 cut(s) 228, 317, 493, 808, 823, 826, 1012, 1015
MflI RGATCY 1 cut(s) 1016
MhlI GDGCHC 4 cut(s) 138, 167, 223, 1033
MluCI AATT 6 cut(s) 147, 429, 446, 644, 730, 848
MlyI GAGTC 3 cut(s) 938, 1000, 1103
MmeI TCCRAC 2 cut(s) 435, 578
Mph1103I ATGCAT 1 cut(s) 406
MroXI GAANNNNTTC 2 cut(s) 151, 294
MseI TTAA 3 cut(s) 26, 159, 519
MspA1I CMGCKG 1 cut(s) 120
MspI CCGG 2 cut(s) 512, 671
MspR9I CCNGG 1 cut(s) 208
Mva1269I GAATGC 1 cut(s) 967
MvaI CCWGG 1 cut(s) 208
MwoI GCNNNNNNNGC 3 cut(s) 142, 227, 1037
NdeII GATC 2 cut(s) 468, 1016
NlaIII CATG 4 cut(s) 16, 190, 286, 886
NmuCI GTSAC 2 cut(s) 86, 696
NsiI ATGCAT 1 cut(s) 406
NspV TTCGAA 1 cut(s) 214
PciSI GCTCTTC 1 cut(s) 211
PcsI WCGNNNNNNNCGW 1 cut(s) 82
PctI GAATGC 1 cut(s) 967
PdmI GAANNNNTTC 2 cut(s) 151, 294
PfeI GAWTC 4 cut(s) 152, 676, 871, 910
PkrI GCNGC 5 cut(s) 122, 202, 205, 840, 952
PleI GAGTC 3 cut(s) 937, 1000, 1102
PpsI GAGTC 3 cut(s) 937, 1000, 1102
PsiI TTATAA 1 cut(s) 1023
Psp124BI GAGCTC 2 cut(s) 138, 223
Psp6I CCWGG 1 cut(s) 206
PspFI CCCAGC 1 cut(s) 109
PspGI CCWGG 1 cut(s) 206
PstNI CAGNNNCTG 1 cut(s) 913
PsuI RGATCY 1 cut(s) 1016
RsaI GTAC 1 cut(s) 638
RsaNI GTAC 1 cut(s) 637
SacI GAGCTC 2 cut(s) 138, 223
SapI GCTCTTC 1 cut(s) 211
SaqAI TTAA 3 cut(s) 26, 159, 519
SatI GCNGC 5 cut(s) 121, 201, 204, 839, 951
Sau3AI GATC 2 cut(s) 468, 1016
SchI GAGTC 3 cut(s) 938, 1000, 1103
ScrFI CCNGG 1 cut(s) 208
SduI GDGCHC 4 cut(s) 138, 167, 223, 1033
SfaNI GCATC 2 cut(s) 868, 876
SfuI TTCGAA 1 cut(s) 214
SmlI CTYRAG 1 cut(s) 222
SmoI CTYRAG 1 cut(s) 222
SpeI ACTAGT 2 cut(s) 368, 770
Sse9I AATT 6 cut(s) 147, 429, 446, 644, 730, 848
SsiI CCGC 4 cut(s) 118, 123, 200, 839
SspMI CTAG 3 cut(s) 369, 702, 771
SstI GAGCTC 2 cut(s) 138, 223
StyD4I CCNGG 1 cut(s) 206
StyI CCWWGG 1 cut(s) 701
TaaI ACNGT 3 cut(s) 559, 806, 905
TaiI ACGT 1 cut(s) 312
TaqI TCGA 3 cut(s) 214, 1013, 1027
TasI AATT 6 cut(s) 147, 429, 446, 644, 730, 848
TatI WGTACW 1 cut(s) 636
TauI GCSGC 2 cut(s) 203, 841
TfiI GAWTC 4 cut(s) 152, 676, 871, 910
Tru1I TTAA 3 cut(s) 26, 159, 519
Tru9I TTAA 3 cut(s) 26, 159, 519
TscAI CASTG 1 cut(s) 811
TseFI GTSAC 2 cut(s) 86, 696
TseI GCWGC 3 cut(s) 120, 203, 950
Tsp45I GTSAC 2 cut(s) 86, 696
TspDTI ATGAA 6 cut(s) 24, 203, 299, 303, 668, 974
TspGWI ACGGA 1 cut(s) 995
TspRI CASTG 1 cut(s) 811
XagI CCTNNNNNAGG 1 cut(s) 266
XapI RAATTY 3 cut(s) 446, 644, 848
XmaJI CCTAGG 1 cut(s) 701
XmnI GAANNNNTTC 2 cut(s) 151, 294
XspI CTAG 3 cut(s) 369, 702, 771
Zsp2I ATGCAT 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.