MD03G1183500.v1.1

DEK C terminal domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
25032532 .. 25039544
7013 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1183500.v1.1.491

Sequence Viewer

Length: 2019 bp
ATGATCATGGGTGAAATAGACATGGTGGCCAATGACACTGAAATAGTGGCAAATGGGACTAGCCAGTTAGAGAAAACTAGCAGAGATACAACTGAGAAAAAAGGAGATGAAAGGGTTGAGGTAAAAGAAATGGACGTAGATAAGAAAGGTAATGAGATCGATGAAGTGGAGAAAATGGATGAAGACCAAGAGACCAATGGAAGCAAAGTTGAACAAGTGAAAGACGAAGCTGAAGGACCCAAAGTTGAGGAATTGAAAGAGGAAACTGGTCCAGATGAAGTTAAAAAAGATGACGAGAATGCACAAGTTGAGAAAATGGGCAAAGACCTAGAGGCTGATGGAAGCAAAGGTGAAAAGGTGAAAGAAGGAAGAGAGGAACTCAAAGTTGAGGAAAAGGAAGAAGAAACTGCTCCAAATGAAAAAGAGGAGACTGAAGAAAAGAAGGAAATTGAAGTGGAAGAAGAGAAGGTTGATGGGCTTTCGGTGGAGGAAGAGAAGGAAAAAGTGAAGGTTGAAGAGAAGGAAGAAGAGAAAGAAGAGATAGTAGAAGATAAGGAAGAAGAGATGGAAGAAGAGAAGGAAGAAGAAGCTAAGGTGGAGAAAGGGCCAAGGAAGCGTGCAAAAGGAAAGAGTGCAGAGAAAACCATAGAGAAGAAAAAGAAAGTTGCAGAAAAGAAGGAGCCTGAGCCAAGAACTCCTGCTACTGATCGGCCTGTTCGTGAGCGGAAATCAGTTGAAAGGCTGGTGGAAGCTATTGAAAAGGATAATGCCAAGGAATTCCATATAGAGAAGGGACGCGGTACACCATTGAAAGACATACCTAATGTGGCTTTCAAGTTGTCAAGAAGGAAAATTGATGATAACATAAAACTACTTCATACTATTCTTTTTGGAAGGAGAGGAAAGGCACTTGAGGTCAAGAGTAATATATCCAGGTTTTCTGGTTTTGTGTGGCGTGGAAATGAGGACAAGCAAAACGCTAAAGTAAAAGAAAAATTTGACAAGTGTAATAAAGAGAAGTTACTGGACTTCTGTGATCTGCTCAACTTATCAGTTTCCAAAGCTACTACTAGGAAGGAGGATATAGTTGCAAAGCTCATTGAATTTTTGATGGCTCCTCATGCTACAACTGATGCGCTCCTCGCAGAAAAAGAGACGCCAACTAAGGGCAACAAGCGCAAGAGGGCAACTAAAGGAAGTCCTTCAACATCTGGGGGCACAAGCTCAAAGCGCCCAGCAAAGAATCATAGAAAGAATGATGATGATTCAAAAATGGAGGACAAGAGTACACCAGATACAGAAGATGAGTCAGAGGAAGATGTGAAAGCCGAAGAAGAAGAAGAAAATGCTGAGGACGAAAATGAAAATGGTGTACCAGAGAAGTCAGAGGACGTGATGCCTGAGCGTTCAGAAAGTGAGGAGAAACATAATTCTTCCGATGATTCTGAGGCAGAAGTGATAAAAAAGAAGCCACGATCAAAATCATCATCCAGAAAGAAGGAATCTTCTGAAAAAGTTAAAACCAAAAAATCCAGAGTTTCTGCTAAATCTACTCCGCCACCTAGTAAAAGACAAAGGAAATCATCAACAAAACGTACTCTGGTTGATGATGACAGTGATACAAGTCCAAAGGCATCCTCAAGGAAGAAGAAAAATGAGAAGGTGTCCAAAGAATCTACTCCAAAAAAATCTGCCTCAACGGAAAAAACTGTGAAAAAAGTTGCTAAAGGGAAGGACAAGACCAAGGAGGGAAAATTGAGGCCAACTGATGACAATTTGAGAGATGCAATATGTCAAATTCTCAAACAAGTTGACTTCAATACGGCTACTTTCACCGACATTCTGAAGCTACTTGCCGGGCAATTCGATGCAGATCTCAGCTTAAGAAAGTCAGCCATAAAGCTCATGATCCAGGAAGAGCTTACTAAATTAGCTGACGAGGCGGATGAAGAAGACGAAGAAGGGGATCCAGAGAAAGACGAAACCCAGACTGCTAAGGAAGAGGAGGTCGAAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

673

Amino Acids

76.13

Weight (kDa)

5.07

Isoelectric Point (pI)

51.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEK_C PF08766 588 - 641 9.5e-12 DEK C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010234)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 724
AccII CGCG 1 cut(s) 798
AciI CCGC 4 cut(s) 724, 798, 1556, 1943
AclWI GGATC 3 cut(s) 1903, 1961, 1974
AcoI YGGCCR 1 cut(s) 27
AcsI RAATTY 4 cut(s) 776, 995, 1103, 1797
AcuI CTGAAG 3 cut(s) 252, 453, 1865
AcyI GRCGYC 1 cut(s) 1157
AfaI GTAC 4 cut(s) 802, 1288, 1374, 1597
AfiI CCNNNNNNNGG 1 cut(s) 1166
AflII CTTAAG 1 cut(s) 1882
AjiI CACGTC 1 cut(s) 1393
AjnI CCWGG 2 cut(s) 932, 1911
Alw26I GTCTC 3 cut(s) 185, 422, 1148
AlwI GGATC 3 cut(s) 1903, 1961, 1974
AoxI GGCC 4 cut(s) 27, 605, 710, 1760
ApoI RAATTY 4 cut(s) 776, 995, 1103, 1797
Asp700I GAANNNNTTC 1 cut(s) 1201
AspLEI GCGC 3 cut(s) 1138, 1179, 1233
AspS9I GGNCC 3 cut(s) 236, 269, 605
AsuC2I CCSGG 1 cut(s) 1858
AsuHPI GGTGA 4 cut(s) 23, 362, 370, 1825
AvaII GGWCC 2 cut(s) 236, 269
BaeGI GKGCMC 1 cut(s) 1220
BalI TGGCCA 1 cut(s) 29
BamHI GGATCC 1 cut(s) 1966
BbsI GAAGAC 2 cut(s) 189, 1959
BbvCI CCTCAGC 1 cut(s) 1350
BccI CCATC 4 cut(s) 332, 467, 559, 1105
BceAI ACGGC 1 cut(s) 1839
BciT130I CCWGG 2 cut(s) 934, 1913
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 1 cut(s) 1858
BcoDI GTCTC 3 cut(s) 185, 422, 1148
BfaI CTAG 5 cut(s) 60, 78, 329, 1071, 1563
BfoI RGCGCY 1 cut(s) 1234
BfrI CTTAAG 1 cut(s) 1882
BglII AGATCT 1 cut(s) 1873
Bme1390I CCNGG 3 cut(s) 934, 1858, 1913
Bme18I GGWCC 2 cut(s) 236, 269
BmgBI CACGTC 1 cut(s) 1393
BmgT120I GGNCC 3 cut(s) 236, 269, 605
BmiI GGNNCC 4 cut(s) 238, 681, 1116, 1968
BmrFI CCNGG 3 cut(s) 934, 1858, 1913
BmsI GCATC 5 cut(s) 1123, 1386, 1643, 1774, 1858
BpiI GAAGAC 2 cut(s) 189, 1959
BplI GAGNNNNNCTC 2 cut(s) 363, 395
Bpu10I CCTNAGC 5 cut(s) 591, 684, 1350, 1401, 1995
BpuEI CTTGAG 2 cut(s) 932, 1624
BpuMI CCSGG 1 cut(s) 1858
Bsa29I ATCGAT 1 cut(s) 159
BsaBI GATNNNNATC 2 cut(s) 1480, 1872
BsaHI GRCGYC 1 cut(s) 1157
BsaI GGTCTC 1 cut(s) 185
BsaJI CCNNGG 3 cut(s) 608, 771, 1743
Bsc4I CCNNNNNNNGG 1 cut(s) 1166
Bse1I ACTGG 3 cut(s) 64, 271, 1029
Bse8I GATNNNNATC 2 cut(s) 1480, 1872
BseBI CCWGG 2 cut(s) 934, 1913
BseCI ATCGAT 1 cut(s) 159
BseDI CCNNGG 3 cut(s) 608, 771, 1743
BseGI GGATG 4 cut(s) 184, 1487, 1634, 1951
BseJI GATNNNNATC 2 cut(s) 1480, 1872
BseLI CCNNNNNNNGG 1 cut(s) 1166
BseMII CTCAG 6 cut(s) 84, 675, 1341, 1392, 1437, 1891
BseNI ACTGG 3 cut(s) 64, 271, 1029
BseRI GAGGAG 5 cut(s) 440, 1107, 1130, 1433, 2018
BseSI GKGCMC 1 cut(s) 1220
BseYI CCCAGC 1 cut(s) 1234
BsgI GTGCAG 1 cut(s) 654
Bsh1236I CGCG 1 cut(s) 798
BshFI GGCC 4 cut(s) 29, 607, 712, 1762
BshVI ATCGAT 1 cut(s) 159
BsiSI CCGG 1 cut(s) 1857
BslFI GGGAC 2 cut(s) 70, 807
BslI CCNNNNNNNGG 1 cut(s) 1166
BsmAI GTCTC 3 cut(s) 185, 422, 1148
BsmBI CGTCTC 1 cut(s) 1148
BsmFI GGGAC 2 cut(s) 70, 807
BsmI GAATGC 1 cut(s) 304
BsnI GGCC 4 cut(s) 29, 607, 712, 1762
Bso31I GGTCTC 1 cut(s) 185
Bsp1286I GDGCHC 1 cut(s) 1220
Bsp143I GATC 8 cut(s) 3, 156, 706, 1036, 1475, 1873, 1908, 1966
BspACI CCGC 4 cut(s) 724, 798, 1556, 1943
BspANI GGCC 4 cut(s) 29, 607, 712, 1762
BspCNI CTCAG 6 cut(s) 85, 676, 1342, 1393, 1438, 1890
BspDI ATCGAT 1 cut(s) 159
BspFNI CGCG 1 cut(s) 798
BspHI TCATGA 1 cut(s) 1905
BspLI GGNNCC 4 cut(s) 238, 681, 1116, 1968
BspPI GGATC 3 cut(s) 1903, 1961, 1974
BspQI GCTCTTC 1 cut(s) 1911
BspTI CTTAAG 1 cut(s) 1882
BspTNI GGTCTC 1 cut(s) 185
BsrBI CCGCTC 1 cut(s) 724
BsrI ACTGG 3 cut(s) 64, 271, 1029
BssECI CCNNGG 3 cut(s) 608, 771, 1743
BssMI GATC 8 cut(s) 3, 156, 706, 1036, 1475, 1873, 1908, 1966
BssNI GRCGYC 1 cut(s) 1157
BssT1I CCWWGG 3 cut(s) 608, 771, 1743
Bst2UI CCWGG 2 cut(s) 934, 1913
Bst4CI ACNGT 2 cut(s) 1616, 1711
BstACI GRCGYC 1 cut(s) 1157
BstAFI CTTAAG 1 cut(s) 1882
BstC8I GCNNGC 1 cut(s) 618
BstDEI CTNAG 9 cut(s) 93, 591, 684, 1164, 1350, 1401, 1446, 1877, 1995
BstF5I GGATG 4 cut(s) 184, 1487, 1634, 1951
BstFNI CGCG 1 cut(s) 798
BstH2I RGCGCY 1 cut(s) 1234
BstHHI GCGC 3 cut(s) 1138, 1179, 1233
BstKTI GATC 8 cut(s) 6, 159, 709, 1039, 1478, 1876, 1911, 1969
BstMAI GTCTC 3 cut(s) 185, 422, 1148
BstMBI GATC 8 cut(s) 3, 156, 706, 1036, 1475, 1873, 1908, 1966
BstMWI GCNNNNNNNGC 6 cut(s) 613, 1121, 1142, 1176, 1230, 1940
BstNI CCWGG 2 cut(s) 934, 1913
BstSCI CCNGG 3 cut(s) 932, 1856, 1911
BstSLI GKGCMC 1 cut(s) 1220
BstUI CGCG 1 cut(s) 798
BstV2I GAAGAC 2 cut(s) 189, 1959
BstX2I RGATCY 2 cut(s) 1873, 1966
BstYI RGATCY 2 cut(s) 1873, 1966
Bsu15I ATCGAT 1 cut(s) 159
BsuRI GGCC 4 cut(s) 29, 607, 712, 1762
BsuTUI ATCGAT 1 cut(s) 159
BtrI CACGTC 1 cut(s) 1393
BtsCI GGATG 4 cut(s) 184, 1487, 1634, 1951
BtsIMutI CAGTG 2 cut(s) 36, 1621
Cac8I GCNNGC 1 cut(s) 618
CciI TCATGA 1 cut(s) 1905
CfoI GCGC 3 cut(s) 1138, 1179, 1233
Cfr13I GGNCC 3 cut(s) 236, 269, 605
ClaI ATCGAT 1 cut(s) 159
CseI GACGC 2 cut(s) 804, 1165
Csp6I GTAC 4 cut(s) 801, 1287, 1373, 1596
CviAII CATG 4 cut(s) 7, 22, 1121, 1906
CviQI GTAC 4 cut(s) 801, 1287, 1373, 1596
DdeI CTNAG 9 cut(s) 93, 591, 684, 1164, 1350, 1401, 1446, 1877, 1995
DpnI GATC 8 cut(s) 5, 158, 708, 1038, 1477, 1875, 1910, 1968
DpnII GATC 8 cut(s) 3, 156, 706, 1036, 1475, 1873, 1908, 1966
EaeI YGGCCR 1 cut(s) 27
EciI GGCGGA 2 cut(s) 1545, 1958
Eco130I CCWWGG 3 cut(s) 608, 771, 1743
Eco31I GGTCTC 1 cut(s) 185
Eco47I GGWCC 2 cut(s) 236, 269
Eco57I CTGAAG 3 cut(s) 252, 453, 1865
EcoO109I RGGNCCY 1 cut(s) 236
EcoRI GAATTC 1 cut(s) 776
EcoRII CCWGG 2 cut(s) 932, 1911
EcoT14I CCWWGG 3 cut(s) 608, 771, 1743
ErhI CCWWGG 3 cut(s) 608, 771, 1743
Esp3I CGTCTC 1 cut(s) 1148
FaeI CATG 4 cut(s) 10, 25, 1124, 1909
FaqI GGGAC 2 cut(s) 70, 807
FatI CATG 4 cut(s) 6, 21, 1120, 1905
FbaI TGATCA 1 cut(s) 3
FokI GGATG 4 cut(s) 191, 1474, 1621, 1958
FspBI CTAG 5 cut(s) 60, 78, 329, 1071, 1563
GlaI GCGC 3 cut(s) 1137, 1178, 1232
GsaI CCCAGC 1 cut(s) 1238
HaeII RGCGCY 1 cut(s) 1234
HaeIII GGCC 4 cut(s) 29, 607, 712, 1762
HapII CCGG 1 cut(s) 1857
HgaI GACGC 2 cut(s) 804, 1165
HhaI GCGC 3 cut(s) 1138, 1179, 1233
Hin1I GRCGYC 1 cut(s) 1157
Hin1II CATG 4 cut(s) 10, 25, 1124, 1909
Hin6I GCGC 3 cut(s) 1136, 1177, 1231
HinP1I GCGC 3 cut(s) 1136, 1177, 1231
HincII GTYRAC 1 cut(s) 1813
HindII GTYRAC 1 cut(s) 1813
HinfI GANTC 6 cut(s) 1243, 1265, 1307, 1442, 1502, 1673
HpaII CCGG 1 cut(s) 1857
HphI GGTGA 4 cut(s) 23, 362, 370, 1825
Hpy166II GTNNAC 4 cut(s) 803, 1289, 1373, 1813
Hpy188I TCNGA 8 cut(s) 1312, 1387, 1411, 1438, 1447, 1510, 1845, 2018
Hpy188III TCNNGA 8 cut(s) 272, 719, 843, 919, 1491, 1533, 1906, 1970
Hpy8I GTNNAC 4 cut(s) 803, 1289, 1373, 1813
HpyCH4III ACNGT 2 cut(s) 1616, 1711
HpyCH4IV ACGT 3 cut(s) 135, 1392, 1594
HpyCH4V TGCA 7 cut(s) 302, 620, 635, 668, 1091, 1787, 1871
HpyF10VI GCNNNNNNNGC 6 cut(s) 613, 1121, 1142, 1176, 1230, 1940
HpyF3I CTNAG 9 cut(s) 93, 591, 684, 1164, 1350, 1401, 1446, 1877, 1995
HpySE526I ACGT 3 cut(s) 135, 1392, 1594
Hsp92I GRCGYC 1 cut(s) 1157
Hsp92II CATG 4 cut(s) 10, 25, 1124, 1909
HspAI GCGC 3 cut(s) 1136, 1177, 1231
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 8 cut(s) 3, 156, 706, 1036, 1475, 1873, 1908, 1966
LguI GCTCTTC 1 cut(s) 1911
LmnI GCTCC 4 cut(s) 415, 679, 1120, 1143
LweI GCATC 5 cut(s) 1123, 1386, 1643, 1774, 1858
MaeI CTAG 5 cut(s) 60, 78, 329, 1071, 1563
MaeII ACGT 3 cut(s) 135, 1392, 1594
MaeIII GTNAC 1 cut(s) 1020
MalI GATC 8 cut(s) 5, 158, 708, 1038, 1477, 1875, 1910, 1968
MbiI CCGCTC 1 cut(s) 724
MboI GATC 8 cut(s) 3, 156, 706, 1036, 1475, 1873, 1908, 1966
MflI RGATCY 2 cut(s) 1873, 1966
MhlI GDGCHC 1 cut(s) 1220
MlsI TGGCCA 1 cut(s) 29
MluNI TGGCCA 1 cut(s) 29
MlyI GAGTC 1 cut(s) 1316
Mox20I TGGCCA 1 cut(s) 29
MroXI GAANNNNTTC 1 cut(s) 1201
MscI TGGCCA 1 cut(s) 29
MseI TTAA 3 cut(s) 282, 1518, 1883
Msp20I TGGCCA 1 cut(s) 29
MspCI CTTAAG 1 cut(s) 1882
MspI CCGG 1 cut(s) 1857
MspR9I CCNGG 3 cut(s) 934, 1858, 1913
Mva1269I GAATGC 1 cut(s) 304
MvaI CCWGG 2 cut(s) 934, 1913
MvnI CGCG 1 cut(s) 798
MwoI GCNNNNNNNGC 6 cut(s) 613, 1121, 1142, 1176, 1230, 1940
NciI CCSGG 1 cut(s) 1858
NdeII GATC 8 cut(s) 3, 156, 706, 1036, 1475, 1873, 1908, 1966
NlaIII CATG 4 cut(s) 10, 25, 1124, 1909
NlaIV GGNNCC 4 cut(s) 238, 681, 1116, 1968
PagI TCATGA 1 cut(s) 1905
PciSI GCTCTTC 1 cut(s) 1911
PcsI WCGNNNNNNNCGW 1 cut(s) 715
PctI GAATGC 1 cut(s) 304
PdmI GAANNNNTTC 1 cut(s) 1201
PfeI GAWTC 5 cut(s) 1243, 1265, 1442, 1502, 1673
PfoI TCCNGGA 1 cut(s) 1911
PleI GAGTC 1 cut(s) 1315
PpsI GAGTC 1 cut(s) 1315
PpuMI RGGWCCY 1 cut(s) 236
Psp5II RGGWCCY 1 cut(s) 236
Psp6I CCWGG 2 cut(s) 932, 1911
PspFI CCCAGC 1 cut(s) 1234
PspGI CCWGG 2 cut(s) 932, 1911
PspN4I GGNNCC 4 cut(s) 238, 681, 1116, 1968
PspPI GGNCC 3 cut(s) 236, 269, 605
PspPPI RGGWCCY 1 cut(s) 236
PsrI GAACNNNNNNTAC 2 cut(s) 685, 717
PsuI RGATCY 2 cut(s) 1873, 1966
RsaI GTAC 4 cut(s) 802, 1288, 1374, 1597
RsaNI GTAC 4 cut(s) 801, 1287, 1373, 1596
SapI GCTCTTC 1 cut(s) 1911
SaqAI TTAA 3 cut(s) 282, 1518, 1883
Sau3AI GATC 8 cut(s) 3, 156, 706, 1036, 1475, 1873, 1908, 1966
Sau96I GGNCC 3 cut(s) 236, 269, 605
SchI GAGTC 1 cut(s) 1316
ScrFI CCNGG 3 cut(s) 934, 1858, 1913
SduI GDGCHC 1 cut(s) 1220
SfaNI GCATC 5 cut(s) 1123, 1386, 1643, 1774, 1858
SinI GGWCC 2 cut(s) 236, 269
SmlI CTYRAG 3 cut(s) 911, 1639, 1882
SmoI CTYRAG 3 cut(s) 911, 1639, 1882
SsiI CCGC 4 cut(s) 724, 798, 1556, 1943
SspMI CTAG 5 cut(s) 60, 78, 329, 1071, 1563
StyD4I CCNGG 3 cut(s) 932, 1856, 1911
StyI CCWWGG 3 cut(s) 608, 771, 1743
TaaI ACNGT 2 cut(s) 1616, 1711
TaiI ACGT 3 cut(s) 138, 1395, 1597
TaqI TCGA 3 cut(s) 159, 1866, 2010
TatI WGTACW 1 cut(s) 1286
TfiI GAWTC 5 cut(s) 1243, 1265, 1442, 1502, 1673
Tru1I TTAA 3 cut(s) 282, 1518, 1883
Tru9I TTAA 3 cut(s) 282, 1518, 1883
TscAI CASTG 2 cut(s) 43, 1621
TspDTI ATGAA 8 cut(s) 123, 177, 195, 291, 432, 866, 1377, 1962
TspGWI ACGGA 1 cut(s) 1715
TspRI CASTG 2 cut(s) 43, 1621
Vha464I CTTAAG 1 cut(s) 1882
VpaK11BI GGWCC 2 cut(s) 236, 269
XapI RAATTY 4 cut(s) 776, 995, 1103, 1797
XcmI CCANNNNNNNNNTGG 1 cut(s) 194
XmnI GAANNNNTTC 1 cut(s) 1201
XspI CTAG 5 cut(s) 60, 78, 329, 1071, 1563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.