Prupe.4G242600_v2.0.a1

DEK C terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0010234
Physical Location & Seq
Forward (+)
16007624 .. 16013488
5865 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G242600.1

Sequence Viewer

Length: 1734 bp
ATGGATGAAGACCTAGAGGCTGATGGAAGCAGAGATGAAAAATTAAAAGAAGAAAAAGAGGAACTTAAAGTTGAGGAAATGGAAGAAGAAACTGGTCCGAATGAAAAAAAGGAGACCGAAGAAAAGACTGAAGAAAAGAGGGAATTTGAAGTGGAGGAGGACAAGGTAAAGAAGGCAGAAGAGAAGGCAGAAGAGTTGGAAGAAGAAAAAGAAGAAGAGAAAGAAGAAGAAAAGGAAGAAGAGAAGGAAGAAGAGATGGAAGAAGAGAAGGAAGAAGAAAAGGAAGAAGATAAGGAAGAAGCGAGGGCAAAAGAAGCTAAGGTGGAGAAAGGGCCGAGGAAGCGTGGAAAAGGAAAGAGTGTGGAGAAAACTAAAGAGAAGAAAAAGGAAGTGGCAGAAAAGAAGGAGCCAGAGCAAAGGACTCCTACTACTGATCGCCCTGTACGTGAGCGGAAATCAGTTGAAAGGCTGGTGGCATCTATTGAAAAAGATGCTGTCAGGGAATTCCAAATAGAAAAGGGGCGCGGTACACCATTGAAAGACATACCTAATGTGGCTTTCAAGTTGTCAAGAAGGAAATTGGATGATAGCTTAAAACTACTTCACACAATTCTTTTTGGAAGGAGAGGGAAGGCAGTTGAGGTCAAGAGTAATATATCCCGATTTTCTGGTTTTGTCTGGCGTGGAAATGAGGACAAGCAAAAGACTAAGGTGAAAGAGAAATTTGACAAGTGTAATAAAGAGAAGTTGTTGGAATTCTGTGATCTGCTCAACTTACCAATTTCCAAAGCTACTACTAGGAAGGAGGATATAGTTGCAAAGCTGATAGACTTTTTGGTGTCCCCTCATGCCACAACCACTTCTCTCCTTGCAGAAAAAGAGTCAAGTAAGGGCAAAAAGCGCAAGAGGGCAACTAAAGGAAGTTCATCAACATCTGGGGGCACAAATTCAAAGCGCTCAGCAAAGAATCGTAGAAAGAATGATGATGATTCAAAATTGGACGACAAGAGTGCAGCAGATACAGAAGATGAGTCAGAGGAAGATGAGAAAGAAGATGAAGAAAATGTTGAGGAGGAAAACGAAAATGGTGTTCGCGAAAACTCTGAGGATGAGACGCCTGAGCATTCAGAAAGTGAGGAGAAACTTGATTCTTCAGATGATAGTGAAGAAGAAGTGGAAAAGCAAAAGCCAAGGCGAAAATCATCATCCAGAAAGAAGGGTTCTTCTGCTAAAGCTCAAACTAAAAAAGCCACAGGTTCTGCTAAATCTACTCCACCACCTACTAAATCACGAAAGAAGTCATCATCAAAACGCACTCCGGTGGATGATGACAGCGATACGAGTCCAAAGGCATCCTCAAGGAAGAAGAAAAATGAGAAAGTCTCAAAAGTGCCAACTCCAACAAAATCTGCCTCAAAGGAAAAGCCTGGGAAAAAGGTTGCTAAAGGGAAGGACAAGACCAAGGAGGAAAAATTGAGGCCAAGTGATGACAAATTGAGAGATGCAATATGTCAAATTCTCAAAGAGGTTGACTTTAATACGGCTACTTTCACCGACATTCTGAAGCAACTTGCTCGGCAATTTGATACAGATCTCAGCCCGAGAAAGTCATCCATAAAGCTCATGATCCAGGAAGAGCTTACGAAATTAGCTGATGAGGCAGATGAAGAAGACGAAGAAGGGGGCCCAGAGAAAGATGAAACCGAGTCTGCCGGGCAAGAGGTGGAAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DEK_C

Protein Analysis

578

Amino Acids

65.79

Weight (kDa)

5.24

Isoelectric Point (pI)

56.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010234)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26630 AT4G26630 AT5G55660
fragaria_vesca FvH4_3g29362
malus_domestica MD03G1183500.v1.1 MD11G1200600.v1.1
prunus_persica Prupe.4G242600_v2.0.a1
pyrus_communis pycom03g13710 pycom11g17300
rosa_chinensis RchiOBHm_Chr5g0053741
rosa_laevigata RLG00000034900
rosa_multiflora Rmu_sc0001759.1_g000043
rosa_roxburghii Rroxscaffold_1G00026850
rosa_rugosa Rorug05G0281900 Rorug05G0282000 Rorug05G0282100
rosa_samantha Rh5AG352800 Rh5BG364500 Rh5CG389400 Rh5DG379300
rosa_wichuraiana Rw5G033330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 451
AccII CGCG 2 cut(s) 525, 1095
AciI CCGC 2 cut(s) 451, 525
AclWI GGATC 1 cut(s) 1621
AcsI RAATTY 6 cut(s) 143, 503, 722, 755, 946, 1515
AcuI CTGAAG 3 cut(s) 150, 1137, 1583
AcyI GRCGYC 1 cut(s) 1115
AfaI GTAC 2 cut(s) 444, 529
AfeI AGCGCT 1 cut(s) 956
AgsI TTSAA 7 cut(s) 149, 464, 485, 538, 562, 951, 993
AjnI CCWGG 2 cut(s) 1426, 1629
AleI CACNNNNGTG 1 cut(s) 1319
AluBI AGCT 8 cut(s) 317, 591, 791, 823, 1235, 1621, 1639, 1652
AluI AGCT 8 cut(s) 317, 591, 791, 823, 1235, 1621, 1639, 1652
Alw26I GTCTC 3 cut(s) 107, 1106, 1387
AlwI GGATC 1 cut(s) 1621
AlwNI CAGNNNCTG 1 cut(s) 1259
Ama87I CYCGRG 1 cut(s) 1600
Aor51HI AGCGCT 1 cut(s) 956
AoxI GGCC 3 cut(s) 332, 1478, 1684
ApaI GGGCCC 1 cut(s) 1688
ApeKI GCWGC 1 cut(s) 1013
ApoI RAATTY 6 cut(s) 143, 503, 722, 755, 946, 1515
AspLEI GCGC 3 cut(s) 525, 903, 957
AspS9I GGNCC 4 cut(s) 95, 332, 1684, 1685
AsuC2I CCSGG 1 cut(s) 1714
AsuHPI GGTGA 2 cut(s) 724, 1543
AvaI CYCGRG 1 cut(s) 1600
AvaII GGWCC 1 cut(s) 95
BaeGI GKGCMC 2 cut(s) 944, 1688
BanII GRGCYC 1 cut(s) 1688
BbsI GAAGAC 2 cut(s) 15, 1677
BbvI GCAGC 1 cut(s) 1025
BccI CCATC 2 cut(s) 17, 250
BceAI ACGGC 1 cut(s) 1557
BcgI CGANNNNNNTGC 4 cut(s) 992, 1026, 1556, 1590
BciT130I CCWGG 2 cut(s) 1428, 1631
BcnI CCSGG 1 cut(s) 1714
BcoDI GTCTC 3 cut(s) 107, 1106, 1387
BfaI CTAG 2 cut(s) 14, 798
BfoI RGCGCY 1 cut(s) 958
BglII AGATCT 1 cut(s) 1591
BisI GCNGC 1 cut(s) 1014
BlpI GCTNAGC 1 cut(s) 958
BlsI GCNGC 1 cut(s) 1015
Bme1390I CCNGG 3 cut(s) 1428, 1631, 1714
Bme18I GGWCC 1 cut(s) 95
BmeT110I CYCGRG 1 cut(s) 1600
BmgT120I GGNCC 4 cut(s) 95, 332, 1684, 1685
BmiI GGNNCC 3 cut(s) 408, 1685, 1686
BmrFI CCNGG 3 cut(s) 1428, 1631, 1714
BmsI GCATC 4 cut(s) 481, 485, 1361, 1492
BpiI GAAGAC 2 cut(s) 15, 1677
BplI GAGNNNNNCTC 2 cut(s) 1367, 1399
Bpu10I CCTNAGC 2 cut(s) 318, 1119
Bpu1102I GCTNAGC 1 cut(s) 958
BpuEI CTTGAG 1 cut(s) 1342
BpuMI CCSGG 1 cut(s) 1714
BsaAI YACGTR 1 cut(s) 446
BsaBI GATNNNNATC 1 cut(s) 1590
BsaHI GRCGYC 1 cut(s) 1115
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 4 cut(s) 335, 1190, 1427, 1461
BsaWI WCCGGW 1 cut(s) 1318
Bse1I ACTGG 1 cut(s) 97
Bse8I GATNNNNATC 1 cut(s) 1590
BseBI CCWGG 2 cut(s) 1428, 1631
BseDI CCNNGG 4 cut(s) 335, 1190, 1427, 1461
BseGI GGATG 7 cut(s) 10, 589, 1114, 1205, 1330, 1352, 1610
BseJI GATNNNNATC 1 cut(s) 1590
BseMII CTCAG 4 cut(s) 972, 1095, 1110, 1609
BseNI ACTGG 1 cut(s) 97
BseRI GAGGAG 3 cut(s) 170, 1085, 1151
BseSI GKGCMC 2 cut(s) 944, 1688
BseXI GCAGC 1 cut(s) 1025
BsgI GTGCAG 1 cut(s) 1032
Bsh1236I CGCG 2 cut(s) 525, 1095
BshFI GGCC 3 cut(s) 334, 1480, 1686
BsiHKCI CYCGRG 1 cut(s) 1600
BsiSI CCGG 2 cut(s) 1319, 1713
BslFI GGGAC 1 cut(s) 826
BsmAI GTCTC 3 cut(s) 107, 1106, 1387
BsmBI CGTCTC 1 cut(s) 1106
BsmFI GGGAC 1 cut(s) 826
BsmI GAATGC 1 cut(s) 1123
BsnI GGCC 3 cut(s) 334, 1480, 1686
Bso31I GGTCTC 1 cut(s) 107
BsoBI CYCGRG 1 cut(s) 1600
Bsp120I GGGCCC 1 cut(s) 1684
Bsp1286I GDGCHC 2 cut(s) 944, 1688
Bsp143I GATC 4 cut(s) 433, 763, 1591, 1626
Bsp1720I GCTNAGC 1 cut(s) 958
Bsp68I TCGCGA 1 cut(s) 1095
BspACI CCGC 2 cut(s) 451, 525
BspANI GGCC 3 cut(s) 334, 1480, 1686
BspCNI CTCAG 4 cut(s) 971, 1096, 1111, 1608
BspFNI CGCG 2 cut(s) 525, 1095
BspHI TCATGA 1 cut(s) 1623
BspLI GGNNCC 3 cut(s) 408, 1685, 1686
BspPI GGATC 1 cut(s) 1621
BspQI GCTCTTC 1 cut(s) 1629
BspTNI GGTCTC 1 cut(s) 107
BsrBI CCGCTC 1 cut(s) 451
BsrI ACTGG 1 cut(s) 97
BssECI CCNNGG 4 cut(s) 335, 1190, 1427, 1461
BssMI GATC 4 cut(s) 433, 763, 1591, 1626
BssNI GRCGYC 1 cut(s) 1115
BssT1I CCWWGG 2 cut(s) 1190, 1461
Bst2UI CCWGG 2 cut(s) 1428, 1631
Bst6I CTCTTC 7 cut(s) 174, 186, 210, 234, 246, 258, 1629
BstACI GRCGYC 1 cut(s) 1115
BstBAI YACGTR 1 cut(s) 446
BstDEI CTNAG 6 cut(s) 318, 708, 958, 1104, 1119, 1595
BstF5I GGATG 7 cut(s) 10, 589, 1114, 1205, 1330, 1352, 1610
BstFNI CGCG 2 cut(s) 525, 1095
BstH2I RGCGCY 1 cut(s) 958
BstHHI GCGC 3 cut(s) 525, 903, 957
BstKTI GATC 4 cut(s) 436, 766, 1594, 1629
BstMAI GTCTC 3 cut(s) 107, 1106, 1387
BstMBI GATC 4 cut(s) 433, 763, 1591, 1626
BstMWI GCNNNNNNNGC 4 cut(s) 314, 340, 900, 1658
BstNI CCWGG 2 cut(s) 1428, 1631
BstSCI CCNGG 3 cut(s) 1426, 1629, 1712
BstSLI GKGCMC 2 cut(s) 944, 1688
BstUI CGCG 2 cut(s) 525, 1095
BstV1I GCAGC 1 cut(s) 1025
BstV2I GAAGAC 2 cut(s) 15, 1677
BstX2I RGATCY 1 cut(s) 1591
BstYI RGATCY 1 cut(s) 1591
BsuRI GGCC 3 cut(s) 334, 1480, 1686
BtsCI GGATG 7 cut(s) 10, 589, 1114, 1205, 1330, 1352, 1610
BtuMI TCGCGA 1 cut(s) 1095
CaiI CAGNNNCTG 1 cut(s) 1259
CciI TCATGA 1 cut(s) 1623
CfoI GCGC 3 cut(s) 525, 903, 957
Cfr13I GGNCC 4 cut(s) 95, 332, 1684, 1685
CseI GACGC 1 cut(s) 1123
Csp6I GTAC 2 cut(s) 443, 528
CviAII CATG 2 cut(s) 848, 1624
CviQI GTAC 2 cut(s) 443, 528
DdeI CTNAG 6 cut(s) 318, 708, 958, 1104, 1119, 1595
DpnI GATC 4 cut(s) 435, 765, 1593, 1628
DpnII GATC 4 cut(s) 433, 763, 1591, 1626
Eam1104I CTCTTC 7 cut(s) 174, 186, 210, 234, 246, 258, 1629
EarI CTCTTC 7 cut(s) 174, 186, 210, 234, 246, 258, 1629
Eco130I CCWWGG 2 cut(s) 1190, 1461
Eco24I GRGCYC 1 cut(s) 1688
Eco31I GGTCTC 1 cut(s) 107
Eco47I GGWCC 1 cut(s) 95
Eco47III AGCGCT 1 cut(s) 956
Eco57I CTGAAG 3 cut(s) 150, 1137, 1583
Eco88I CYCGRG 1 cut(s) 1600
EcoO109I RGGNCCY 1 cut(s) 1684
EcoRI GAATTC 2 cut(s) 503, 755
EcoRII CCWGG 2 cut(s) 1426, 1629
EcoT14I CCWWGG 2 cut(s) 1190, 1461
EcoT38I GRGCYC 1 cut(s) 1688
ErhI CCWWGG 2 cut(s) 1190, 1461
Esp3I CGTCTC 1 cut(s) 1106
FaeI CATG 2 cut(s) 851, 1627
FaiI YATR 7 cut(s) 545, 656, 812, 849, 1510, 1616, 1625
FalI AAGNNNNNCTT 2 cut(s) 48, 80
FaqI GGGAC 1 cut(s) 826
FatI CATG 2 cut(s) 847, 1623
Fnu4HI GCNGC 1 cut(s) 1014
FokI GGATG 7 cut(s) 17, 596, 1121, 1192, 1337, 1339, 1597
FriOI GRGCYC 1 cut(s) 1688
Fsp4HI GCNGC 1 cut(s) 1014
FspBI CTAG 2 cut(s) 14, 798
GlaI GCGC 3 cut(s) 524, 902, 956
GluI GCNGC 1 cut(s) 1014
HaeII RGCGCY 1 cut(s) 958
HaeIII GGCC 3 cut(s) 334, 1480, 1686
HapII CCGG 2 cut(s) 1319, 1713
HgaI GACGC 1 cut(s) 1123
HhaI GCGC 3 cut(s) 525, 903, 957
Hin1I GRCGYC 1 cut(s) 1115
Hin1II CATG 2 cut(s) 851, 1627
Hin6I GCGC 3 cut(s) 523, 901, 955
HinP1I GCGC 3 cut(s) 523, 901, 955
HincII GTYRAC 1 cut(s) 1531
HindII GTYRAC 1 cut(s) 1531
HinfI GANTC 8 cut(s) 421, 881, 967, 989, 1031, 1148, 1342, 1706
HpaII CCGG 2 cut(s) 1319, 1713
HphI GGTGA 2 cut(s) 724, 1543
Hpy166II GTNNAC 2 cut(s) 530, 1531
Hpy188I TCNGA 6 cut(s) 99, 1036, 1105, 1129, 1156, 1563
Hpy188III TCNNGA 7 cut(s) 570, 646, 660, 1094, 1209, 1290, 1624
Hpy8I GTNNAC 2 cut(s) 530, 1531
HpyCH4IV ACGT 1 cut(s) 445
HpyCH4V TGCA 4 cut(s) 818, 872, 1013, 1505
HpyF10VI GCNNNNNNNGC 4 cut(s) 314, 340, 900, 1658
HpyF3I CTNAG 6 cut(s) 318, 708, 958, 1104, 1119, 1595
HpySE526I ACGT 1 cut(s) 445
Hsp92I GRCGYC 1 cut(s) 1115
Hsp92II CATG 2 cut(s) 851, 1627
HspAI GCGC 3 cut(s) 523, 901, 955
Kzo9I GATC 4 cut(s) 433, 763, 1591, 1626
LguI GCTCTTC 1 cut(s) 1629
LmnI GCTCC 1 cut(s) 406
Lsp1109I GCAGC 1 cut(s) 1025
LweI GCATC 4 cut(s) 481, 485, 1361, 1492
MaeI CTAG 2 cut(s) 14, 798
MaeII ACGT 1 cut(s) 445
MalI GATC 4 cut(s) 435, 765, 1593, 1628
MbiI CCGCTC 1 cut(s) 451
MboI GATC 4 cut(s) 433, 763, 1591, 1626
MflI RGATCY 1 cut(s) 1591
MhlI GDGCHC 2 cut(s) 944, 1688
MlyI GAGTC 5 cut(s) 415, 890, 1040, 1351, 1715
MmeI TCCRAC 3 cut(s) 177, 732, 1424
MseI TTAA 4 cut(s) 44, 66, 593, 1536
MslI CAYNNNNRTG 1 cut(s) 1319
MspI CCGG 2 cut(s) 1319, 1713
MspR9I CCNGG 3 cut(s) 1428, 1631, 1714
Mva1269I GAATGC 1 cut(s) 1123
MvaI CCWGG 2 cut(s) 1428, 1631
MvnI CGCG 2 cut(s) 525, 1095
MwoI GCNNNNNNNGC 4 cut(s) 314, 340, 900, 1658
NciI CCSGG 1 cut(s) 1714
NdeII GATC 4 cut(s) 433, 763, 1591, 1626
NlaIII CATG 2 cut(s) 851, 1627
NlaIV GGNNCC 3 cut(s) 408, 1685, 1686
NmeAIII GCCGAG 2 cut(s) 360, 1555
NruI TCGCGA 1 cut(s) 1095
OliI CACNNNNGTG 1 cut(s) 1319
PagI TCATGA 1 cut(s) 1623
PciSI GCTCTTC 1 cut(s) 1629
PcsI WCGNNNNNNNCGW 1 cut(s) 442
PctI GAATGC 1 cut(s) 1123
PfeI GAWTC 3 cut(s) 967, 989, 1148
PfoI TCCNGGA 1 cut(s) 1629
PkrI GCNGC 1 cut(s) 1015
PleI GAGTC 5 cut(s) 415, 889, 1039, 1350, 1714
PpsI GAGTC 5 cut(s) 415, 889, 1039, 1350, 1714
Ppu21I YACGTR 1 cut(s) 446
Psp6I CCWGG 2 cut(s) 1426, 1629
PspGI CCWGG 2 cut(s) 1426, 1629
PspN4I GGNNCC 3 cut(s) 408, 1685, 1686
PspOMI GGGCCC 1 cut(s) 1684
PspPI GGNCC 4 cut(s) 95, 332, 1684, 1685
PstNI CAGNNNCTG 1 cut(s) 1259
PsuI RGATCY 1 cut(s) 1591
RruI TCGCGA 1 cut(s) 1095
RsaI GTAC 2 cut(s) 444, 529
RsaNI GTAC 2 cut(s) 443, 528
RseI CAYNNNNRTG 1 cut(s) 1319
SapI GCTCTTC 1 cut(s) 1629
SaqAI TTAA 4 cut(s) 44, 66, 593, 1536
SatI GCNGC 1 cut(s) 1014
Sau3AI GATC 4 cut(s) 433, 763, 1591, 1626
Sau96I GGNCC 4 cut(s) 95, 332, 1684, 1685
SchI GAGTC 5 cut(s) 415, 890, 1040, 1351, 1715
ScrFI CCNGG 3 cut(s) 1428, 1631, 1714
SduI GDGCHC 2 cut(s) 944, 1688
SfaNI GCATC 4 cut(s) 481, 485, 1361, 1492
SinI GGWCC 1 cut(s) 95
SmiMI CAYNNNNRTG 1 cut(s) 1319
SmlI CTYRAG 1 cut(s) 1357
SmoI CTYRAG 1 cut(s) 1357
SsiI CCGC 2 cut(s) 451, 525
SspMI CTAG 2 cut(s) 14, 798
StyD4I CCNGG 3 cut(s) 1426, 1629, 1712
StyI CCWWGG 2 cut(s) 1190, 1461
TaiI ACGT 1 cut(s) 448
TaqII GACCGA 1 cut(s) 131
TfiI GAWTC 3 cut(s) 967, 989, 1148
Tru1I TTAA 4 cut(s) 44, 66, 593, 1536
Tru9I TTAA 4 cut(s) 44, 66, 593, 1536
TseI GCWGC 1 cut(s) 1013
TspDTI ATGAA 7 cut(s) 21, 51, 117, 915, 1071, 1680, 1713
VpaK11BI GGWCC 1 cut(s) 95
XapI RAATTY 6 cut(s) 143, 503, 722, 755, 946, 1515
XspI CTAG 2 cut(s) 14, 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.