Rw5G033330

DEK C terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0010234
Physical Location & Seq
Reverse (-)
56521695 .. 56529067
7373 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G033330.1

Sequence Viewer

Length: 2010 bp
ATGGGTGATGAAGACACGGTGGCTAATGGCACCGAAACAGTAGCAAACGGTATTAGCAAGCCGCAGGAAACCAGTGAAGCTGTGAGTGAGAAGAAATGTGAGGAGAAGGTGGGTATCAAAGAAATGGATGAAGATAAGAAAAGTGATGAGAAAGATGGAGTTGAGAAAATGGATGAAGATCTAGAGGTCAATGGAAGCAAAGATGAAAACGTGAAAGAAGAAAAAGAGGAACCCAAAGTTGAGGAGATTGAAGACAAAACTGGGGATCAAGATAAGAAAGGTGTTGAGAAAGCTGAAGTTGGAAAAATGGATGAAGACAGACAGGCAAATGGAAGTAATGGTGAAAAAGTGGAAGAAGAAACTGATCCAAATGAAAAAGAGATGACCAAAGAAAAATCTGAAGAAAAGAAGGAAATTGAAGTGGAAGAAAAGAAAATTGACGAGACTAATGAAGCGGAAGAGAAGGCAGAAGAGAAGGAAGAAGAGAAGGTAGAAGAGAAGGCAGAAGAGATGGAAGAAGAGAAGGACGAGGAGATGGAAGAAGATAAGGAAGAAGAGAAGAAGGATGAGGAGAAGAAAGAAGAGAGAGAAAAAGAGGCTAAGGGGGCTAAAGGATCGAAAAAGCGTGGACAACAGAGTGGAGAGAAAACTAAAAGTAATGAGAAGAAAAAAAAAGTGTTAAAAAAGGAGCCGGAGCCAAGGACTCCTGCTATTGATCGTCCTGTACGTGAGCGGAAATCAGTTGAAAGGCTGGTGGCATCTATAGAAAAAGATACTACCAGGGACTTCCAAATAGAGAAGGGAAGTGGTACAGCACTGAAAGACATACCCAATGTGGCCTTCAAGTTATCAAGGAAGAAAATGGATGATACCCTCAAACTGCTTCATACAATTCTTTTTGGGGGAAGGAGAGGAAAGGCAGTTCAGGTCAAGAGTAACATATCCAGGTTTTCTGGTTTTGTGTGGCATGGAAATGAGGACAAGCAAAAGAGTAAAGTAAAAGAAAAAATGGACAAGTGTAATAAAGAGAAGTTACTGGAATTTTGTGATCTGTTTGACTTACCAACCGCCAAAGCTACTTCTAAGAAGGAGGATATAGTTGCGAAGCTGATAGACTTTTTGGTTGCACCTCATGCGACCACTACTGTGGTACTTGGAGAAAAAGAGCAGTCAAGTAAGGGCCAAAAGCGCAAGAGGGCAGCTAAAGGCAGTTCATCAACATCTGGGGGCTCAAAGCGGTCAGGAAAGAGTCGTAGGAAGAATGATGATGATTCAAAATTGGAGGATAAGAGTACACCAGATACAGAAGACGAGTCGGAGGAAGAGGAGAAAGAAGAAGACGATGAAAAGGTAGAGGAGGAAATGGAAGATGTAGCTCAAGAAAAGTCTGAGGATGAGATGCCTGAGCATTCAGATAGTGAAGAGAAACATGATCCTTCAGATGATTCTGAAGAAGAAGTGGTAAAAAAGAAGCCACGTTCAAAATCATCATCCAGAAAGAAGGAATCTGCTGGAAAAGCTAAAACTAAAAAAGCTACAGTTTCTCCTAAATCTACTCCACCAGCTAATAAACCAAAGAAGTCAACACCAAAACGCACTCCAGTTGATGATGACAGTGACACGAGTCCAAAGCCATCCTCAAGGAAGAAGAGAACTGAGCGATTGTCAAAAGCCTCAACTCCAACAAAATCTGCCTTGAAAGAAAAAACTGGGAAAAAAGTCGCTAAAGGGAAGGACAAGACCAAGGAGGAAAAATTGAGGCCAAGTGATGATGAGTTGAGAGATGCAATATGTGAGATTCTCAAAGAAGTTGACTTCAATACGGCTACTTTCACCGACATTCTGAAGCATCTTGCTCAGCAATTTGCTACTGATCTCAGCGTGAGAAAGTCATCTATAAAGGTAATGATCCAGGAAGAGCTTACCAAATTAGCTGATGAGGCGGACGAGGAAGATGGAGATGATGCAGAGAAAGATGAACCCCAGTCTGCTGGGGAGGTGGAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DEK_C

Protein Analysis

669

Amino Acids

75.43

Weight (kDa)

5.04

Isoelectric Point (pI)

52.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEK_C PF08766 588 - 641 4.7e-14 DEK C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010234)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26630 AT4G26630 AT5G55660
fragaria_vesca FvH4_3g29362
malus_domestica MD03G1183500.v1.1 MD11G1200600.v1.1
prunus_persica Prupe.4G242600_v2.0.a1
pyrus_communis pycom03g13710 pycom11g17300
rosa_chinensis RchiOBHm_Chr5g0053741
rosa_laevigata RLG00000034900
rosa_multiflora Rmu_sc0001759.1_g000043
rosa_roxburghii Rroxscaffold_1G00026850
rosa_rugosa Rorug05G0281900 Rorug05G0282000 Rorug05G0282100
rosa_samantha Rh5AG352800 Rh5BG364500 Rh5CG389400 Rh5DG379300
rosa_wichuraiana Rw5G033330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 29
AccBSI CCGCTC 1 cut(s) 733
AciI CCGC 6 cut(s) 62, 455, 733, 1068, 1237, 1943
AclWI GGATC 5 cut(s) 273, 359, 622, 1427, 1903
AcsI RAATTY 1 cut(s) 1040
AcuI CTGAAG 5 cut(s) 315, 420, 1422, 1470, 1865
AfaI GTAC 4 cut(s) 726, 811, 1152, 1294
AgsI TTSAA 8 cut(s) 251, 419, 746, 844, 1275, 1482, 1699, 1819
AjnI CCWGG 3 cut(s) 779, 944, 1911
AjuI GAANNNNNNNTTGG 2 cut(s) 824, 856
AleI CACNNNNGTG 1 cut(s) 1145
AloI GAACNNNNNNTCC 2 cut(s) 906, 938
Alw26I GTCTC 1 cut(s) 437
AlwI GGATC 5 cut(s) 273, 359, 622, 1427, 1903
AoxI GGCC 3 cut(s) 837, 1180, 1760
ApeKI GCWGC 1 cut(s) 1199
ApoI RAATTY 1 cut(s) 1040
AspLEI GCGC 1 cut(s) 1191
AspS9I GGNCC 1 cut(s) 1180
AsuHPI GGTGA 3 cut(s) 17, 353, 1825
BanI GGYRCC 1 cut(s) 29
BanII GRGCYC 1 cut(s) 1232
BauI CACGAG 1 cut(s) 1621
BbsI GAAGAC 5 cut(s) 18, 258, 321, 1314, 1344
BbvI GCAGC 1 cut(s) 1211
BccI CCATC 5 cut(s) 149, 505, 529, 1642, 1949
BceAI ACGGC 1 cut(s) 1839
BciT130I CCWGG 3 cut(s) 781, 946, 1913
BcoDI GTCTC 1 cut(s) 437
BfaI CTAG 1 cut(s) 182
BfmI CTRYAG 2 cut(s) 762, 1536
BglII AGATCT 1 cut(s) 178
BisI GCNGC 2 cut(s) 62, 1200
BlpI GCTNAGC 1 cut(s) 1857
BlsI GCNGC 2 cut(s) 63, 1201
Bme1390I CCNGG 3 cut(s) 781, 946, 1913
BmgT120I GGNCC 1 cut(s) 1180
BmiI GGNNCC 4 cut(s) 31, 231, 690, 696
BmrFI CCNGG 3 cut(s) 781, 946, 1913
BmrI ACTGGG 3 cut(s) 270, 1719, 1978
BmsI GCATC 5 cut(s) 767, 1389, 1774, 1858, 1954
BmuI ACTGGG 3 cut(s) 270, 1719, 1978
BoxI GACNNNNGTC 1 cut(s) 1623
BpiI GAAGAC 5 cut(s) 18, 258, 321, 1314, 1344
BpmI CTGGAG 1 cut(s) 1584
Bpu10I CCTNAGC 2 cut(s) 600, 1404
Bpu1102I GCTNAGC 1 cut(s) 1857
BpuEI CTTGAG 2 cut(s) 1362, 1624
BsaAI YACGTR 1 cut(s) 728
BsaBI GATNNNNATC 1 cut(s) 177
BsaJI CCNNGG 3 cut(s) 698, 780, 1743
BsaXI ACNNNNNCTCC 2 cut(s) 1528, 1558
Bse1I ACTGG 6 cut(s) 72, 265, 1041, 1601, 1714, 1984
Bse8I GATNNNNATC 1 cut(s) 177
BseBI CCWGG 3 cut(s) 781, 946, 1913
BseDI CCNNGG 3 cut(s) 698, 780, 1743
BseGI GGATG 8 cut(s) 133, 178, 316, 571, 871, 1399, 1490, 1634
BseJI GATNNNNATC 1 cut(s) 177
BseMII CTCAG 5 cut(s) 1380, 1395, 1647, 1871, 1891
BseNI ACTGG 6 cut(s) 72, 265, 1041, 1601, 1714, 1984
BseRI GAGGAG 6 cut(s) 116, 257, 545, 584, 1340, 1370
BseXI GCAGC 1 cut(s) 1211
BseYI CCCAGC 1 cut(s) 1991
BshFI GGCC 3 cut(s) 839, 1182, 1762
BshNI GGYRCC 1 cut(s) 29
BsiSI CCGG 1 cut(s) 692
BslFI GGGAC 1 cut(s) 797
BsmAI GTCTC 1 cut(s) 437
BsmFI GGGAC 1 cut(s) 797
BsmI GAATGC 1 cut(s) 1408
BsnI GGCC 3 cut(s) 839, 1182, 1762
Bsp1286I GDGCHC 1 cut(s) 1232
Bsp143I GATC 9 cut(s) 178, 265, 364, 614, 715, 1048, 1432, 1873, 1908
Bsp1720I GCTNAGC 1 cut(s) 1857
BspACI CCGC 6 cut(s) 62, 455, 733, 1068, 1237, 1943
BspANI GGCC 3 cut(s) 839, 1182, 1762
BspCNI CTCAG 5 cut(s) 1381, 1396, 1648, 1870, 1890
BspLI GGNNCC 4 cut(s) 31, 231, 690, 696
BspPI GGATC 5 cut(s) 273, 359, 622, 1427, 1903
BspQI GCTCTTC 1 cut(s) 1911
BspT107I GGYRCC 1 cut(s) 29
BsrBI CCGCTC 1 cut(s) 733
BsrI ACTGG 6 cut(s) 72, 265, 1041, 1601, 1714, 1984
BssECI CCNNGG 3 cut(s) 698, 780, 1743
BssMI GATC 9 cut(s) 178, 265, 364, 614, 715, 1048, 1432, 1873, 1908
BssSI CACGAG 1 cut(s) 1621
BssT1I CCWWGG 2 cut(s) 698, 1743
Bst2BI CACGAG 1 cut(s) 1621
Bst2UI CCWGG 3 cut(s) 781, 946, 1913
Bst4CI ACNGT 6 cut(s) 19, 40, 50, 1147, 1540, 1616
BstAPI GCANNNNNTGC 1 cut(s) 1133
BstBAI YACGTR 1 cut(s) 728
BstC8I GCNNGC 1 cut(s) 59
BstDEI CTNAG 7 cut(s) 600, 1083, 1389, 1404, 1656, 1857, 1877
BstF5I GGATG 8 cut(s) 133, 178, 316, 571, 871, 1399, 1490, 1634
BstHHI GCGC 1 cut(s) 1191
BstKTI GATC 9 cut(s) 181, 268, 367, 617, 718, 1051, 1435, 1876, 1911
BstMAI GTCTC 1 cut(s) 437
BstMBI GATC 9 cut(s) 178, 265, 364, 614, 715, 1048, 1432, 1873, 1908
BstMWI GCNNNNNNNGC 5 cut(s) 605, 1133, 1188, 1517, 1940
BstNI CCWGG 3 cut(s) 781, 946, 1913
BstPAI GACNNNNGTC 1 cut(s) 1623
BstSCI CCNGG 3 cut(s) 779, 944, 1911
BstSFI CTRYAG 2 cut(s) 762, 1536
BstV1I GCAGC 1 cut(s) 1211
BstV2I GAAGAC 5 cut(s) 18, 258, 321, 1314, 1344
BstX2I RGATCY 1 cut(s) 178
BstXI CCANNNNNNTGG 2 cut(s) 1147, 1991
BstYI RGATCY 1 cut(s) 178
BsuRI GGCC 3 cut(s) 839, 1182, 1762
BtsCI GGATG 8 cut(s) 133, 178, 316, 571, 871, 1399, 1490, 1634
BtsIMutI CAGTG 3 cut(s) 79, 815, 1621
Cac8I GCNNGC 1 cut(s) 59
CfoI GCGC 1 cut(s) 1191
Cfr13I GGNCC 1 cut(s) 1180
Csp6I GTAC 4 cut(s) 725, 810, 1151, 1293
CviAII CATG 3 cut(s) 968, 1133, 1430
CviQI GTAC 4 cut(s) 725, 810, 1151, 1293
DdeI CTNAG 7 cut(s) 600, 1083, 1389, 1404, 1656, 1857, 1877
DpnI GATC 9 cut(s) 180, 267, 366, 616, 717, 1050, 1434, 1875, 1910
DpnII GATC 9 cut(s) 178, 265, 364, 614, 715, 1048, 1432, 1873, 1908
EciI GGCGGA 1 cut(s) 1958
Eco130I CCWWGG 2 cut(s) 698, 1743
Eco24I GRGCYC 1 cut(s) 1232
Eco57I CTGAAG 5 cut(s) 315, 420, 1422, 1470, 1865
EcoRII CCWGG 3 cut(s) 779, 944, 1911
EcoT14I CCWWGG 2 cut(s) 698, 1743
EcoT38I GRGCYC 1 cut(s) 1232
ErhI CCWWGG 2 cut(s) 698, 1743
FaeI CATG 3 cut(s) 971, 1136, 1433
FaqI GGGAC 1 cut(s) 797
FatI CATG 3 cut(s) 967, 1132, 1429
Fnu4HI GCNGC 2 cut(s) 62, 1200
FokI GGATG 8 cut(s) 140, 185, 323, 578, 878, 1406, 1477, 1621
FriOI GRGCYC 1 cut(s) 1232
Fsp4HI GCNGC 2 cut(s) 62, 1200
FspBI CTAG 1 cut(s) 182
GlaI GCGC 1 cut(s) 1190
GluI GCNGC 2 cut(s) 62, 1200
GsaI CCCAGC 1 cut(s) 1995
GsuI CTGGAG 1 cut(s) 1584
HaeIII GGCC 3 cut(s) 839, 1182, 1762
HapII CCGG 1 cut(s) 692
HhaI GCGC 1 cut(s) 1191
Hin1II CATG 3 cut(s) 971, 1136, 1433
Hin6I GCGC 1 cut(s) 1189
HinP1I GCGC 1 cut(s) 1189
HincII GTYRAC 2 cut(s) 1584, 1813
HindII GTYRAC 2 cut(s) 1584, 1813
HinfI GANTC 8 cut(s) 703, 1249, 1271, 1313, 1445, 1505, 1624, 1798
HpaII CCGG 1 cut(s) 692
HphI GGTGA 3 cut(s) 17, 353, 1825
Hpy166II GTNNAC 4 cut(s) 629, 1295, 1584, 1813
Hpy188I TCNGA 7 cut(s) 400, 1318, 1390, 1414, 1441, 1450, 1845
Hpy188III TCNNGA 6 cut(s) 182, 269, 931, 1242, 1379, 1494
Hpy8I GTNNAC 4 cut(s) 629, 1295, 1584, 1813
HpyCH4III ACNGT 6 cut(s) 19, 40, 50, 1147, 1540, 1616
HpyCH4IV ACGT 3 cut(s) 210, 727, 1477
HpyCH4V TGCA 3 cut(s) 1127, 1787, 1967
HpyF10VI GCNNNNNNNGC 5 cut(s) 605, 1133, 1188, 1517, 1940
HpyF3I CTNAG 7 cut(s) 600, 1083, 1389, 1404, 1656, 1857, 1877
HpySE526I ACGT 3 cut(s) 210, 727, 1477
Hsp92II CATG 3 cut(s) 971, 1136, 1433
HspAI GCGC 1 cut(s) 1189
Kzo9I GATC 9 cut(s) 178, 265, 364, 614, 715, 1048, 1432, 1873, 1908
LguI GCTCTTC 1 cut(s) 1911
LmnI GCTCC 2 cut(s) 688, 694
Lsp1109I GCAGC 1 cut(s) 1211
LweI GCATC 5 cut(s) 767, 1389, 1774, 1858, 1954
MaeI CTAG 1 cut(s) 182
MaeII ACGT 3 cut(s) 210, 727, 1477
MaeIII GTNAC 3 cut(s) 935, 1032, 1616
MalI GATC 9 cut(s) 180, 267, 366, 616, 717, 1050, 1434, 1875, 1910
MbiI CCGCTC 1 cut(s) 733
MboI GATC 9 cut(s) 178, 265, 364, 614, 715, 1048, 1432, 1873, 1908
MflI RGATCY 1 cut(s) 178
MhlI GDGCHC 1 cut(s) 1232
MluCI AATT 8 cut(s) 414, 435, 891, 1040, 1277, 1754, 1862, 1928
MlyI GAGTC 4 cut(s) 697, 1258, 1322, 1633
MmeI TCCRAC 3 cut(s) 280, 1296, 1706
MseI TTAA 1 cut(s) 680
MslI CAYNNNNRTG 2 cut(s) 972, 1145
MspI CCGG 1 cut(s) 692
MspR9I CCNGG 3 cut(s) 781, 946, 1913
Mva1269I GAATGC 1 cut(s) 1408
MvaI CCWGG 3 cut(s) 781, 946, 1913
MwoI GCNNNNNNNGC 5 cut(s) 605, 1133, 1188, 1517, 1940
NdeII GATC 9 cut(s) 178, 265, 364, 614, 715, 1048, 1432, 1873, 1908
NlaIII CATG 3 cut(s) 971, 1136, 1433
NlaIV GGNNCC 4 cut(s) 31, 231, 690, 696
NmuCI GTSAC 1 cut(s) 1616
OliI CACNNNNGTG 1 cut(s) 1145
PciSI GCTCTTC 1 cut(s) 1911
PcsI WCGNNNNNNNCGW 1 cut(s) 724
PctI GAATGC 1 cut(s) 1408
PfeI GAWTC 4 cut(s) 1271, 1445, 1505, 1798
PfoI TCCNGGA 1 cut(s) 1911
PkrI GCNGC 2 cut(s) 63, 1201
PleI GAGTC 4 cut(s) 697, 1257, 1321, 1632
PpsI GAGTC 4 cut(s) 697, 1257, 1321, 1632
Ppu21I YACGTR 1 cut(s) 728
PshAI GACNNNNGTC 1 cut(s) 1623
Psp6I CCWGG 3 cut(s) 779, 944, 1911
PspFI CCCAGC 1 cut(s) 1991
PspGI CCWGG 3 cut(s) 779, 944, 1911
PspN4I GGNNCC 4 cut(s) 31, 231, 690, 696
PspPI GGNCC 1 cut(s) 1180
PsuI RGATCY 1 cut(s) 178
RsaI GTAC 4 cut(s) 726, 811, 1152, 1294
RsaNI GTAC 4 cut(s) 725, 810, 1151, 1293
RseI CAYNNNNRTG 2 cut(s) 972, 1145
SapI GCTCTTC 1 cut(s) 1911
SaqAI TTAA 1 cut(s) 680
SatI GCNGC 2 cut(s) 62, 1200
Sau3AI GATC 9 cut(s) 178, 265, 364, 614, 715, 1048, 1432, 1873, 1908
Sau96I GGNCC 1 cut(s) 1180
SchI GAGTC 4 cut(s) 697, 1258, 1322, 1633
ScrFI CCNGG 3 cut(s) 781, 946, 1913
SduI GDGCHC 1 cut(s) 1232
SfaNI GCATC 5 cut(s) 767, 1389, 1774, 1858, 1954
SfcI CTRYAG 2 cut(s) 762, 1536
SmiMI CAYNNNNRTG 2 cut(s) 972, 1145
SmlI CTYRAG 2 cut(s) 1377, 1639
SmoI CTYRAG 2 cut(s) 1377, 1639
Sse9I AATT 8 cut(s) 414, 435, 891, 1040, 1277, 1754, 1862, 1928
SsiI CCGC 6 cut(s) 62, 455, 733, 1068, 1237, 1943
SspMI CTAG 1 cut(s) 182
StyD4I CCNGG 3 cut(s) 779, 944, 1911
StyI CCWWGG 2 cut(s) 698, 1743
TaaI ACNGT 6 cut(s) 19, 40, 50, 1147, 1540, 1616
TaiI ACGT 3 cut(s) 213, 730, 1480
TaqI TCGA 1 cut(s) 617
TasI AATT 8 cut(s) 414, 435, 891, 1040, 1277, 1754, 1862, 1928
TatI WGTACW 1 cut(s) 1292
TauI GCSGC 1 cut(s) 64
TfiI GAWTC 4 cut(s) 1271, 1445, 1505, 1798
Tru1I TTAA 1 cut(s) 680
Tru9I TTAA 1 cut(s) 680
TscAI CASTG 3 cut(s) 79, 822, 1621
TseFI GTSAC 1 cut(s) 1616
TseI GCWGC 1 cut(s) 1199
Tsp45I GTSAC 1 cut(s) 1616
TspRI CASTG 3 cut(s) 79, 822, 1621
XapI RAATTY 1 cut(s) 1040
XbaI TCTAGA 1 cut(s) 181
XspI CTAG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.