Rroxscaffold_1G00026850

DEK C terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0010234
Physical Location & Seq
Forward (+)
33790348 .. 33796827
6480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00026850.1

Sequence Viewer

Length: 2076 bp
ATGAGTGTTATTTGTGATATATTTCTGAGCAAGTTTGCGGAAAAAGGAATCTCTTTGAGATTAATTAAGATCAGTTCCGTCATGGGTGATGAAGACACGGTGGCTAATGGCACCGAAGCAGCAGCAAATGGTATTAGCAAGCCGCAGGAAACCAGTGAAGCTGTGAGTGAGAAGAAATGTGAGGAGAAGGTGGTTATCAAAGAAATGGATGAAGATAAGAAGAGTGATGAGAAAGATGGAGTTGAGAAAATGGATGAAGATCTAGAGGTCAATGGAAGCAAAGACGAAAAAGTGAAAGAAGAAAAAGAGGAACCCAAAGTTGAGGAGATTGAAGACAAAACTGGGGATCTAGATAAGAAAGGTGTTGAGAAAGCTGAAGTTGGAAAAATGGATGAAGACAGACAGGCAAATGGAAGTAATGGTGAAAAAGTGGAAGAAGAAACTGATCCAAATGAAAAAGAGAAGACCAAAGTAAACTCTGAAGAAAAGAAGGAAATTGAAGTGGAAGAAAAGAAAATTGACGAGACTAATGAAGCAGAAGAGAAGGCAGAAGAGAAGGAAGGAGAGAAGGTAGAAGAGAAGGACGAGGAGATTGAAGAAGATAAGGGAGAAGAGAAGGACGAGGAGATGGAAGAAGAGAAGGAAGAGAAGAAGGACGAGGAGAAGAAAGAAGAGAGAGAAAAAGAGGCTAAGGGGGCTAAAGGATCGAAAAAGCGTGGACAACAGAGTGGAGAGAAAACTAAAATTGAAAGGCTGGTGGCATCTATAGAAAAAGATACTACCAGGGACTTCCAAATAGAGAAGGGAAGTGGTACAGCACTGAAAGACATACCCAATGTGGCCTTCAAGTTATCAAGGAAGAAAATGGATGATACCCTCAAACTACTTCATACAATTCTTTTTGGGGGAAGGAGAGGAAAGGCAGTTCAGGTCAAGAGTAACATATCCAGGTTTTCTGGTTTTGTGTGGCATGGAAATGAGGACAAGCAAAAGAGTAAAGTAAAAGAAAAAATGGACAAGTGTAATAAAGAGAAGTTACTGGAATTTTGTGATCTGTTCGACTTACCAACCGCCAAAGCTACTTCTAAGAAGGAGGATATAGTTGCAAAGCTGATAGACTTTTTGGTTGCACCTCATGCGACCACTACTGCGGTACTTGGAGAAAAAGAGCAGTCGAGTAAGGGCCAAAAGCGCAAGAGGGCAGCTAAAGGCAGTTCATCAACATCTGGGGGCTCAAAGCGGTCAGGAAAGGTGAGTCGTAGGAAGAATGATGGTGATTCGAAATTGGAGGATAAGAGTACACCAGATACAGAAGATGAGTCGGAGGAAGAGGAGAAAGAAGAAGACGATGAAAAGGTAGAGGAGGAAATGGAAGATGTAGCTCAAGAAAAGTCTGAGGACGAGATGCCTGAGCATTCAGATAGTGAGGAGAAACATGATCCTTCAGATGATTCTGAAGAAGAAGTGGAAAAAAAGAAGCCACGTTCAAAATCATCATCCAGAAAGAAGGAATCTGCTGGAAAAGCTAAAACCAAAAAAGCTACAGTTTCTCCTAAATCTACTCCACCAGCTAATAAACCAAAGAAGTCAACACCAAAACGCACTCCAGTTGATGATGACAGTGACACGAGTCCAAAGCCATCCTCAAGGAAGAAGAGAACTGAGCGAGTGCCAAAAGCCTCAACTCCAACAAAATCTGCCTTGAAAGAAAAAACTGGGAAAAAAGTTGCTAAAGGGAAGGACAAGACCAAGGAGGAAAAATTGAGGCCAAGTGATGATGAGTTGAGAGATGCAATATGTGAGATTCTCAAAGAAGTTGACTTCAATACGGCTACTTTCACTGACATTCTGAAGCATCTTGTCAATACTCATCCTTTTGAATTTTCTTTTTGGGTGCATCCCAACTTTTGTCCTCTTTCAGCTCGGCAATTCGATACTGATCTCAGCGTGAGAAAGTCATCTATAAAGGTAATGATCCAGGAAGAGCTTACCAAATTAGCTGATGAGGCGGACGAGGAAGATGGAGAAGATGCAGAGAAAGATGAACCCCAGTCTGCTGGGGAGGTGGAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DEK_C

Protein Analysis

691

Amino Acids

77.71

Weight (kDa)

5.01

Isoelectric Point (pI)

51.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEK_C PF08766 590 - 620 1.9e-06 DEK C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010234)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26630 AT4G26630 AT5G55660
fragaria_vesca FvH4_3g29362
malus_domestica MD03G1183500.v1.1 MD11G1200600.v1.1
prunus_persica Prupe.4G242600_v2.0.a1
pyrus_communis pycom03g13710 pycom11g17300
rosa_chinensis RchiOBHm_Chr5g0053741
rosa_laevigata RLG00000034900
rosa_multiflora Rmu_sc0001759.1_g000043
rosa_roxburghii Rroxscaffold_1G00026850
rosa_rugosa Rorug05G0281900 Rorug05G0282000 Rorug05G0282100
rosa_samantha Rh5AG352800 Rh5BG364500 Rh5CG389400 Rh5DG379300
rosa_wichuraiana Rw5G033330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 110
AciI CCGC 6 cut(s) 38, 143, 1071, 1151, 1240, 2009
AclWI GGATC 5 cut(s) 354, 440, 712, 1433, 1969
AcsI RAATTY 2 cut(s) 1043, 1880
AcuI CTGAAG 5 cut(s) 396, 501, 1428, 1476, 1871
AfaI GTAC 3 cut(s) 814, 1155, 1300
AgsI TTSAA 9 cut(s) 332, 500, 596, 749, 847, 1488, 1705, 1825, 1880
AjnI CCWGG 3 cut(s) 782, 947, 1977
AjuI GAANNNNNNNTTGG 2 cut(s) 827, 859
AloI GAACNNNNNNTCC 2 cut(s) 909, 941
Alw26I GTCTC 1 cut(s) 518
AlwI GGATC 5 cut(s) 354, 440, 712, 1433, 1969
AoxI GGCC 3 cut(s) 840, 1183, 1766
ApeKI GCWGC 3 cut(s) 119, 122, 1202
ApoI RAATTY 2 cut(s) 1043, 1880
AseI ATTAAT 1 cut(s) 62
AspLEI GCGC 1 cut(s) 1194
AspS9I GGNCC 1 cut(s) 1183
AsuHPI GGTGA 4 cut(s) 98, 434, 1264, 1286
AsuII TTCGAA 1 cut(s) 1280
BanI GGYRCC 1 cut(s) 110
BanII GRGCYC 1 cut(s) 1235
BauI CACGAG 1 cut(s) 1627
BbsI GAAGAC 5 cut(s) 99, 339, 402, 470, 1350
BbvI GCAGC 3 cut(s) 131, 134, 1214
BccI CCATC 5 cut(s) 230, 622, 1265, 1648, 2015
BceAI ACGGC 1 cut(s) 1845
BciT130I CCWGG 3 cut(s) 784, 949, 1979
BcoDI GTCTC 1 cut(s) 518
BfaI CTAG 2 cut(s) 263, 350
BfmI CTRYAG 2 cut(s) 765, 1542
BglII AGATCT 1 cut(s) 259
BisI GCNGC 4 cut(s) 120, 123, 143, 1203
BlsI GCNGC 4 cut(s) 121, 124, 144, 1204
Bme1390I CCNGG 3 cut(s) 784, 949, 1979
BmgT120I GGNCC 1 cut(s) 1183
BmiI GGNNCC 2 cut(s) 112, 312
BmrFI CCNGG 3 cut(s) 784, 949, 1979
BmrI ACTGGG 3 cut(s) 351, 1725, 2044
BmsI GCATC 6 cut(s) 770, 1395, 1780, 1864, 1906, 2020
BmuI ACTGGG 3 cut(s) 351, 1725, 2044
BoxI GACNNNNGTC 1 cut(s) 1629
BpiI GAAGAC 5 cut(s) 99, 339, 402, 470, 1350
BpmI CTGGAG 1 cut(s) 1590
Bpu10I CCTNAGC 2 cut(s) 690, 1410
Bpu14I TTCGAA 1 cut(s) 1280
BpuEI CTTGAG 2 cut(s) 1368, 1630
BsaBI GATNNNNATC 2 cut(s) 258, 1938
BsaJI CCNNGG 2 cut(s) 783, 1749
BsaXI ACNNNNNCTCC 4 cut(s) 555, 585, 1534, 1564
Bse1I ACTGG 6 cut(s) 153, 346, 1044, 1607, 1720, 2050
Bse8I GATNNNNATC 2 cut(s) 258, 1938
BseBI CCWGG 3 cut(s) 784, 949, 1979
BseDI CCNNGG 2 cut(s) 783, 1749
BseGI GGATG 8 cut(s) 214, 259, 397, 874, 1496, 1640, 1870, 1897
BseJI GATNNNNATC 2 cut(s) 258, 1938
BseMII CTCAG 5 cut(s) 17, 1386, 1401, 1653, 1957
BseNI ACTGG 6 cut(s) 153, 346, 1044, 1607, 1720, 2050
BseRI GAGGAG 8 cut(s) 197, 338, 602, 638, 674, 1346, 1376, 1442
BseXI GCAGC 3 cut(s) 131, 134, 1214
BseYI CCCAGC 1 cut(s) 2057
BshFI GGCC 3 cut(s) 842, 1185, 1768
BshNI GGYRCC 1 cut(s) 110
BslFI GGGAC 1 cut(s) 800
BsmAI GTCTC 1 cut(s) 518
BsmFI GGGAC 1 cut(s) 800
BsmI GAATGC 1 cut(s) 1414
BsnI GGCC 3 cut(s) 842, 1185, 1768
Bsp119I TTCGAA 1 cut(s) 1280
Bsp1286I GDGCHC 1 cut(s) 1235
Bsp143I GATC 9 cut(s) 69, 259, 346, 445, 704, 1051, 1438, 1939, 1974
BspACI CCGC 6 cut(s) 38, 143, 1071, 1151, 1240, 2009
BspANI GGCC 3 cut(s) 842, 1185, 1768
BspCNI CTCAG 5 cut(s) 18, 1387, 1402, 1654, 1956
BspLI GGNNCC 2 cut(s) 112, 312
BspPI GGATC 5 cut(s) 354, 440, 712, 1433, 1969
BspQI GCTCTTC 1 cut(s) 1977
BspT104I TTCGAA 1 cut(s) 1280
BspT107I GGYRCC 1 cut(s) 110
BsrI ACTGG 6 cut(s) 153, 346, 1044, 1607, 1720, 2050
BssECI CCNNGG 2 cut(s) 783, 1749
BssMI GATC 9 cut(s) 69, 259, 346, 445, 704, 1051, 1438, 1939, 1974
BssSI CACGAG 1 cut(s) 1627
BssT1I CCWWGG 1 cut(s) 1749
Bst2BI CACGAG 1 cut(s) 1627
Bst2UI CCWGG 3 cut(s) 784, 949, 1979
Bst4CI ACNGT 3 cut(s) 100, 1546, 1622
BstAPI GCANNNNNTGC 1 cut(s) 1136
BstBI TTCGAA 1 cut(s) 1280
BstC8I GCNNGC 1 cut(s) 140
BstDEI CTNAG 7 cut(s) 26, 690, 1086, 1395, 1410, 1662, 1943
BstF5I GGATG 8 cut(s) 214, 259, 397, 874, 1496, 1640, 1870, 1897
BstHHI GCGC 1 cut(s) 1194
BstKTI GATC 9 cut(s) 72, 262, 349, 448, 707, 1054, 1441, 1942, 1977
BstMAI GTCTC 1 cut(s) 518
BstMBI GATC 9 cut(s) 69, 259, 346, 445, 704, 1051, 1438, 1939, 1974
BstMWI GCNNNNNNNGC 5 cut(s) 695, 1136, 1191, 1523, 2006
BstNI CCWGG 3 cut(s) 784, 949, 1979
BstPAI GACNNNNGTC 1 cut(s) 1629
BstSCI CCNGG 3 cut(s) 782, 947, 1977
BstSFI CTRYAG 2 cut(s) 765, 1542
BstV1I GCAGC 3 cut(s) 131, 134, 1214
BstV2I GAAGAC 5 cut(s) 99, 339, 402, 470, 1350
BstX2I RGATCY 2 cut(s) 259, 346
BstXI CCANNNNNNTGG 1 cut(s) 2057
BstYI RGATCY 2 cut(s) 259, 346
BsuRI GGCC 3 cut(s) 842, 1185, 1768
BtsCI GGATG 8 cut(s) 214, 259, 397, 874, 1496, 1640, 1870, 1897
BtsIMutI CAGTG 4 cut(s) 160, 818, 1627, 1839
Cac8I GCNNGC 1 cut(s) 140
CfoI GCGC 1 cut(s) 1194
Cfr13I GGNCC 1 cut(s) 1183
Csp6I GTAC 3 cut(s) 813, 1154, 1299
CviAII CATG 4 cut(s) 82, 971, 1136, 1436
CviQI GTAC 3 cut(s) 813, 1154, 1299
DdeI CTNAG 7 cut(s) 26, 690, 1086, 1395, 1410, 1662, 1943
DpnI GATC 9 cut(s) 71, 261, 348, 447, 706, 1053, 1440, 1941, 1976
DpnII GATC 9 cut(s) 69, 259, 346, 445, 704, 1051, 1438, 1939, 1974
EciI GGCGGA 1 cut(s) 2024
Eco130I CCWWGG 1 cut(s) 1749
Eco24I GRGCYC 1 cut(s) 1235
Eco57I CTGAAG 5 cut(s) 396, 501, 1428, 1476, 1871
EcoRII CCWGG 3 cut(s) 782, 947, 1977
EcoT14I CCWWGG 1 cut(s) 1749
EcoT38I GRGCYC 1 cut(s) 1235
ErhI CCWWGG 1 cut(s) 1749
FaeI CATG 4 cut(s) 85, 974, 1139, 1439
FaqI GGGAC 1 cut(s) 800
FatI CATG 4 cut(s) 81, 970, 1135, 1435
Fnu4HI GCNGC 4 cut(s) 120, 123, 143, 1203
FokI GGATG 8 cut(s) 221, 266, 404, 881, 1483, 1627, 1857, 1884
FriOI GRGCYC 1 cut(s) 1235
Fsp4HI GCNGC 4 cut(s) 120, 123, 143, 1203
FspBI CTAG 2 cut(s) 263, 350
GlaI GCGC 1 cut(s) 1193
GluI GCNGC 4 cut(s) 120, 123, 143, 1203
GsaI CCCAGC 1 cut(s) 2061
GsuI CTGGAG 1 cut(s) 1590
HaeIII GGCC 3 cut(s) 842, 1185, 1768
HhaI GCGC 1 cut(s) 1194
Hin1II CATG 4 cut(s) 85, 974, 1139, 1439
Hin6I GCGC 1 cut(s) 1192
HinP1I GCGC 1 cut(s) 1192
HincII GTYRAC 2 cut(s) 1590, 1819
HindII GTYRAC 2 cut(s) 1590, 1819
HinfI GANTC 8 cut(s) 48, 1255, 1277, 1319, 1451, 1511, 1630, 1804
HphI GGTGA 4 cut(s) 98, 434, 1264, 1286
Hpy166II GTNNAC 5 cut(s) 475, 719, 1301, 1590, 1819
Hpy188I TCNGA 8 cut(s) 27, 481, 1324, 1396, 1420, 1447, 1456, 1851
Hpy188III TCNNGA 6 cut(s) 263, 350, 934, 1245, 1385, 1500
Hpy8I GTNNAC 5 cut(s) 475, 719, 1301, 1590, 1819
HpyCH4III ACNGT 3 cut(s) 100, 1546, 1622
HpyCH4IV ACGT 1 cut(s) 1483
HpyCH4V TGCA 5 cut(s) 1106, 1130, 1793, 1897, 2033
HpyF10VI GCNNNNNNNGC 5 cut(s) 695, 1136, 1191, 1523, 2006
HpyF3I CTNAG 7 cut(s) 26, 690, 1086, 1395, 1410, 1662, 1943
HpySE526I ACGT 1 cut(s) 1483
Hsp92II CATG 4 cut(s) 85, 974, 1139, 1439
HspAI GCGC 1 cut(s) 1192
Kzo9I GATC 9 cut(s) 69, 259, 346, 445, 704, 1051, 1438, 1939, 1974
LguI GCTCTTC 1 cut(s) 1977
Lsp1109I GCAGC 3 cut(s) 131, 134, 1214
LweI GCATC 6 cut(s) 770, 1395, 1780, 1864, 1906, 2020
MaeI CTAG 2 cut(s) 263, 350
MaeII ACGT 1 cut(s) 1483
MaeIII GTNAC 3 cut(s) 938, 1035, 1622
MalI GATC 9 cut(s) 71, 261, 348, 447, 706, 1053, 1440, 1941, 1976
MboI GATC 9 cut(s) 69, 259, 346, 445, 704, 1051, 1438, 1939, 1974
MflI RGATCY 2 cut(s) 259, 346
MhlI GDGCHC 1 cut(s) 1235
MlyI GAGTC 3 cut(s) 1264, 1328, 1639
MmeI TCCRAC 3 cut(s) 361, 1302, 1712
MseI TTAA 2 cut(s) 62, 66
MslI CAYNNNNRTG 1 cut(s) 975
MspR9I CCNGG 3 cut(s) 784, 949, 1979
Mva1269I GAATGC 1 cut(s) 1414
MvaI CCWGG 3 cut(s) 784, 949, 1979
MwoI GCNNNNNNNGC 5 cut(s) 695, 1136, 1191, 1523, 2006
NdeII GATC 9 cut(s) 69, 259, 346, 445, 704, 1051, 1438, 1939, 1974
NlaIII CATG 4 cut(s) 85, 974, 1139, 1439
NlaIV GGNNCC 2 cut(s) 112, 312
NmeAIII GCCGAG 1 cut(s) 1903
NmuCI GTSAC 1 cut(s) 1622
NspV TTCGAA 1 cut(s) 1280
PacI TTAATTAA 1 cut(s) 66
PciSI GCTCTTC 1 cut(s) 1977
PctI GAATGC 1 cut(s) 1414
PfeI GAWTC 5 cut(s) 48, 1277, 1451, 1511, 1804
PfoI TCCNGGA 1 cut(s) 1977
PkrI GCNGC 4 cut(s) 121, 124, 144, 1204
PleI GAGTC 3 cut(s) 1263, 1327, 1638
PpsI GAGTC 3 cut(s) 1263, 1327, 1638
PshAI GACNNNNGTC 1 cut(s) 1629
PshBI ATTAAT 1 cut(s) 62
Psp6I CCWGG 3 cut(s) 782, 947, 1977
PspFI CCCAGC 1 cut(s) 2057
PspGI CCWGG 3 cut(s) 782, 947, 1977
PspN4I GGNNCC 2 cut(s) 112, 312
PspPI GGNCC 1 cut(s) 1183
PsuI RGATCY 2 cut(s) 259, 346
RsaI GTAC 3 cut(s) 814, 1155, 1300
RsaNI GTAC 3 cut(s) 813, 1154, 1299
RseI CAYNNNNRTG 1 cut(s) 975
SapI GCTCTTC 1 cut(s) 1977
SaqAI TTAA 2 cut(s) 62, 66
SatI GCNGC 4 cut(s) 120, 123, 143, 1203
Sau3AI GATC 9 cut(s) 69, 259, 346, 445, 704, 1051, 1438, 1939, 1974
Sau96I GGNCC 1 cut(s) 1183
SchI GAGTC 3 cut(s) 1264, 1328, 1639
ScrFI CCNGG 3 cut(s) 784, 949, 1979
SduI GDGCHC 1 cut(s) 1235
SfaNI GCATC 6 cut(s) 770, 1395, 1780, 1864, 1906, 2020
SfcI CTRYAG 2 cut(s) 765, 1542
SfuI TTCGAA 1 cut(s) 1280
SmiMI CAYNNNNRTG 1 cut(s) 975
SmlI CTYRAG 2 cut(s) 1383, 1645
SmoI CTYRAG 2 cut(s) 1383, 1645
SsiI CCGC 6 cut(s) 38, 143, 1071, 1151, 1240, 2009
SspMI CTAG 2 cut(s) 263, 350
StyD4I CCNGG 3 cut(s) 782, 947, 1977
StyI CCWWGG 1 cut(s) 1749
TaaI ACNGT 3 cut(s) 100, 1546, 1622
TaiI ACGT 1 cut(s) 1486
TaqI TCGA 5 cut(s) 707, 1059, 1175, 1280, 1932
TatI WGTACW 1 cut(s) 1298
TauI GCSGC 1 cut(s) 145
TfiI GAWTC 5 cut(s) 48, 1277, 1451, 1511, 1804
Tru1I TTAA 2 cut(s) 62, 66
Tru9I TTAA 2 cut(s) 62, 66
TscAI CASTG 4 cut(s) 160, 825, 1627, 1846
TseFI GTSAC 1 cut(s) 1622
TseI GCWGC 3 cut(s) 119, 122, 1202
Tsp45I GTSAC 1 cut(s) 1622
TspGWI ACGGA 1 cut(s) 67
TspRI CASTG 4 cut(s) 160, 825, 1627, 1846
VspI ATTAAT 1 cut(s) 62
XapI RAATTY 2 cut(s) 1043, 1880
XbaI TCTAGA 2 cut(s) 262, 349
XspI CTAG 2 cut(s) 263, 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.