RLG00000034900

DEK C terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0010234
Physical Location & Seq
Reverse (-)
56748353 .. 56755306
6954 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034900

Sequence Viewer

Length: 2040 bp
ATGGGTGATGAAGACACGGTGGCTAATGGCACCGAAACAGTAGCAAACGGTATTAGCAAGCCGCAGGAAACCAGTGAAGCTGTGAGTGAGAAGAAGTGTGAGGAGAAGGTGGGTATCAAAGAAATGGATGAAGATAAGAAAACTGGTGAGAAAGATGGAGTTGAGAAAATGGATGAAGATCTAGAGGTCAATGGAAGCAAAGATGAAAAAGTGAAAGAAGAAAAAGAGGAACCCAAAGTTGAGGAGATTGAAGACAAAACTGGGGATCAAGATAAGAAAGGTGTTGAGAAAGCTGAAGTTGGAAAAATGAATGAAGACAGACAGGCAAATGGAAGTAATGGTGAAAAAGTGGAAGAAGAAACTGATCCAAATGAAAAAGAGAAGACCAAAGTAAACTCTGAAGAAAAGAAGGAAATTGAAGTGGAAGAAAAGAAAATTGACGAGACTAATGAAGCGGAAGAGAAGGCAGAAGAGAAGGAAGAAGAGACGGAAGGAGAGAAGGTAGAAGAGAAGGCAGAAGAGAAGGACGAGGAGATGGAAGAAGATAAGGAAGAAGAGAAGGACGAGGAGATGGAAGGAGAGAAGGAAGAGAAGAAGGACGAGGAGAAGAAAGAAGAGAGAGAAAAAGAGGCTAAGGGGGCTAAAGGATCGAAAAAGCGTGGACAACAGAGTGGAGAGAAAACTAAAAGTAATGAGAAGAAAAAAAAAGTGTTAAAAAAGGAGCCAGAGCCAAGGACTCCTGCTATTGATCGTCCTGTACGTGAGCGGAAATCAGTTGAAAGGCTGGTGGCATCTATAGAAAAAGATACTACCAGGGACTTCCAAATAGAGAAGGGAAGTGGTACAGCACTGAAAGACATACCCAATGTGGCCTTCAAGTTATCAAGGAAGAAAATGGATGATACCCTCAAACTACTTCATACAATTCTTTTTGGGGGAAGGAGAGGAAAGGCAGTTCAGGTCAAGAGTAACATATCCAGGTTTTCTGGTTTTGTGTGGCATGGAAATGAGGACAAGCAAAAGAGTAAAGTAAAAGAAAAAATGGACAAGTGTAATAAAGAGAAGTTACTGGAATTTTGTGATCTGTTCGACTTACCAACCGCCAAAGCTACTTCTAAGAAGGAGGATATAGTTGCAAAGCTGATAGACTTTTTGGTTGCACCTCATGCGACCACTACTGTGGTACTTGGAGAAAAAGAGCAGTCGAGTAAGGGCCAAAAGCGCAAGAGGGCAGCTAAAGGCAGTTCATCAACATCTGGGGGCTCAAAGCGGTCAGGAAAGAGTCGTAGGAAGAATGATGATGATTCTAAATTGGAGGATAAGAGTACACCTGATACAGAAGATGAGTCGGAGGAAGAGGAGAAAGAAGAAGACGATGAAAAGGTAGAGGAGGATATGGAAGATGTAGCTCAAGAAAAGTCTGAGGATGAGATGCCTGAGCATTCAGATAGTGAGGAGAAACATGATCCTTCAGATGATTCTGAAGAAGAAGTGGAAAAAAAGAAGCCACGTTCAAAATCATCATCCAGAAAGAAGGAATCTGCTGGAAAAGCTAAAACCAAAAAAGCTACAGTTTCTCCTAAATCTACTCCAGCTAATAAACCAAAGAAGTCAACACCAAAACGCACTCCAGTTGATGATGACAGTGACTCGAGTCCAAAGCCATCCTCAAGGAAGAAGAGAACTGAGCGAGTGTCAAAAGCCTCAACTCCAACAAAAACTGTCTTGAAAGAAAAAACTGGGAAAAAAGTTGCTAAAGGGAAGGACAAGACCAAGGAGGAAAAATTGAGGCCAAGTGATGATGAGTTGAGAGATGCAATATGTGAGATTCTCAAAGAAGTTGACTTCAATACGGCTACTTTCACCGACATTCTGAAGCATCTTGCTCGGCAATTTGATACTGATCTCAGCGTGAGAAAGTCATCTATAAAGGTAATGATCCAGGAAGAGCTTACCAAATTAGCTGATGAGGCGGACGAGGAAGATGGAGAAGATGCAGAGAAAGATGAACCCCAGTCTGCTGGGGAGGTGGAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DEK_C

Protein Analysis

680

Amino Acids

76.6

Weight (kDa)

5.04

Isoelectric Point (pI)

52.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEK_C PF08766 598 - 651 7.4e-14 DEK C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010234)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26630 AT4G26630 AT5G55660
fragaria_vesca FvH4_3g29362
malus_domestica MD03G1183500.v1.1 MD11G1200600.v1.1
prunus_persica Prupe.4G242600_v2.0.a1
pyrus_communis pycom03g13710 pycom11g17300
rosa_chinensis RchiOBHm_Chr5g0053741
rosa_laevigata RLG00000034900
rosa_multiflora Rmu_sc0001759.1_g000043
rosa_roxburghii Rroxscaffold_1G00026850
rosa_rugosa Rorug05G0281900 Rorug05G0282000 Rorug05G0282100
rosa_samantha Rh5AG352800 Rh5BG364500 Rh5CG389400 Rh5DG379300
rosa_wichuraiana Rw5G033330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 29
AccBSI CCGCTC 1 cut(s) 766
AciI CCGC 6 cut(s) 62, 455, 766, 1101, 1270, 1973
AclWI GGATC 5 cut(s) 273, 359, 655, 1460, 1933
AcsI RAATTY 1 cut(s) 1073
AcuI CTGAAG 5 cut(s) 315, 420, 1455, 1503, 1895
AfaI GTAC 4 cut(s) 759, 844, 1185, 1327
AgsI TTSAA 7 cut(s) 251, 419, 779, 877, 1515, 1729, 1849
AjnI CCWGG 3 cut(s) 812, 977, 1941
AjuI GAANNNNNNNTTGG 2 cut(s) 857, 889
AleI CACNNNNGTG 1 cut(s) 1178
AloI GAACNNNNNNTCC 2 cut(s) 939, 971
Alw26I GTCTC 2 cut(s) 437, 479
AlwI GGATC 5 cut(s) 273, 359, 655, 1460, 1933
Ama87I CYCGRG 1 cut(s) 1651
AoxI GGCC 3 cut(s) 870, 1213, 1790
ApeKI GCWGC 1 cut(s) 1232
ApoI RAATTY 1 cut(s) 1073
AspLEI GCGC 1 cut(s) 1224
AspS9I GGNCC 1 cut(s) 1213
AsuHPI GGTGA 4 cut(s) 17, 158, 353, 1855
AvaI CYCGRG 1 cut(s) 1651
BanI GGYRCC 1 cut(s) 29
BanII GRGCYC 1 cut(s) 1265
BbsI GAAGAC 5 cut(s) 18, 258, 321, 389, 1377
BbvI GCAGC 1 cut(s) 1244
BccI CCATC 5 cut(s) 149, 529, 565, 1672, 1979
BceAI ACGGC 1 cut(s) 1869
BcgI CGANNNNNNTGC 2 cut(s) 1868, 1902
BciT130I CCWGG 3 cut(s) 814, 979, 1943
BcoDI GTCTC 2 cut(s) 437, 479
BfaI CTAG 1 cut(s) 182
BfmI CTRYAG 2 cut(s) 795, 1569
BglII AGATCT 1 cut(s) 178
BisI GCNGC 2 cut(s) 62, 1233
BlsI GCNGC 2 cut(s) 63, 1234
Bme1390I CCNGG 3 cut(s) 814, 979, 1943
BmeT110I CYCGRG 1 cut(s) 1651
BmgT120I GGNCC 1 cut(s) 1213
BmiI GGNNCC 3 cut(s) 31, 231, 723
BmrFI CCNGG 3 cut(s) 814, 979, 1943
BmrI ACTGGG 3 cut(s) 270, 1749, 2008
BmsI GCATC 5 cut(s) 800, 1422, 1804, 1888, 1984
BmuI ACTGGG 3 cut(s) 270, 1749, 2008
BoxI GACNNNNGTC 1 cut(s) 1653
BpiI GAAGAC 5 cut(s) 18, 258, 321, 389, 1377
BpmI CTGGAG 2 cut(s) 1575, 1614
Bpu10I CCTNAGC 2 cut(s) 633, 1437
BpuEI CTTGAG 2 cut(s) 1395, 1654
BsaAI YACGTR 1 cut(s) 761
BsaBI GATNNNNATC 2 cut(s) 177, 1902
BsaJI CCNNGG 3 cut(s) 731, 813, 1773
BsaXI ACNNNNNCTCC 4 cut(s) 486, 516, 1561, 1591
Bse1I ACTGG 7 cut(s) 72, 148, 265, 1074, 1631, 1744, 2014
Bse8I GATNNNNATC 2 cut(s) 177, 1902
BseBI CCWGG 3 cut(s) 814, 979, 1943
BseDI CCNNGG 3 cut(s) 731, 813, 1773
BseGI GGATG 6 cut(s) 133, 178, 904, 1432, 1523, 1664
BseJI GATNNNNATC 2 cut(s) 177, 1902
BseMII CTCAG 4 cut(s) 1413, 1428, 1677, 1921
BseNI ACTGG 7 cut(s) 72, 148, 265, 1074, 1631, 1744, 2014
BseRI GAGGAG 8 cut(s) 116, 257, 545, 581, 617, 1373, 1403, 1469
BseXI GCAGC 1 cut(s) 1244
BseYI CCCAGC 1 cut(s) 2021
BshFI GGCC 3 cut(s) 872, 1215, 1792
BshNI GGYRCC 1 cut(s) 29
BsiHKCI CYCGRG 1 cut(s) 1651
BslFI GGGAC 1 cut(s) 830
BsmAI GTCTC 2 cut(s) 437, 479
BsmBI CGTCTC 1 cut(s) 479
BsmFI GGGAC 1 cut(s) 830
BsmI GAATGC 1 cut(s) 1441
BsnI GGCC 3 cut(s) 872, 1215, 1792
BsoBI CYCGRG 1 cut(s) 1651
Bsp1286I GDGCHC 1 cut(s) 1265
Bsp143I GATC 9 cut(s) 178, 265, 364, 647, 748, 1081, 1465, 1903, 1938
BspACI CCGC 6 cut(s) 62, 455, 766, 1101, 1270, 1973
BspANI GGCC 3 cut(s) 872, 1215, 1792
BspCNI CTCAG 4 cut(s) 1414, 1429, 1678, 1920
BspLI GGNNCC 3 cut(s) 31, 231, 723
BspPI GGATC 5 cut(s) 273, 359, 655, 1460, 1933
BspQI GCTCTTC 1 cut(s) 1941
BspT107I GGYRCC 1 cut(s) 29
BsrBI CCGCTC 1 cut(s) 766
BsrI ACTGG 7 cut(s) 72, 148, 265, 1074, 1631, 1744, 2014
BssECI CCNNGG 3 cut(s) 731, 813, 1773
BssMI GATC 9 cut(s) 178, 265, 364, 647, 748, 1081, 1465, 1903, 1938
BssT1I CCWWGG 2 cut(s) 731, 1773
Bst2UI CCWGG 3 cut(s) 814, 979, 1943
Bst4CI ACNGT 7 cut(s) 19, 40, 50, 1180, 1573, 1646, 1723
BstAPI GCANNNNNTGC 1 cut(s) 1166
BstBAI YACGTR 1 cut(s) 761
BstC8I GCNNGC 1 cut(s) 59
BstDEI CTNAG 6 cut(s) 633, 1116, 1422, 1437, 1686, 1907
BstF5I GGATG 6 cut(s) 133, 178, 904, 1432, 1523, 1664
BstHHI GCGC 1 cut(s) 1224
BstKTI GATC 9 cut(s) 181, 268, 367, 650, 751, 1084, 1468, 1906, 1941
BstMAI GTCTC 2 cut(s) 437, 479
BstMBI GATC 9 cut(s) 178, 265, 364, 647, 748, 1081, 1465, 1903, 1938
BstMWI GCNNNNNNNGC 5 cut(s) 638, 1166, 1221, 1550, 1970
BstNI CCWGG 3 cut(s) 814, 979, 1943
BstPAI GACNNNNGTC 1 cut(s) 1653
BstSCI CCNGG 3 cut(s) 812, 977, 1941
BstSFI CTRYAG 2 cut(s) 795, 1569
BstV1I GCAGC 1 cut(s) 1244
BstV2I GAAGAC 5 cut(s) 18, 258, 321, 389, 1377
BstX2I RGATCY 1 cut(s) 178
BstXI CCANNNNNNTGG 2 cut(s) 1180, 2021
BstYI RGATCY 1 cut(s) 178
BsuRI GGCC 3 cut(s) 872, 1215, 1792
BtsCI GGATG 6 cut(s) 133, 178, 904, 1432, 1523, 1664
BtsIMutI CAGTG 3 cut(s) 79, 848, 1651
Cac8I GCNNGC 1 cut(s) 59
CfoI GCGC 1 cut(s) 1224
Cfr13I GGNCC 1 cut(s) 1213
Csp6I GTAC 4 cut(s) 758, 843, 1184, 1326
CviAII CATG 3 cut(s) 1001, 1166, 1463
CviQI GTAC 4 cut(s) 758, 843, 1184, 1326
DdeI CTNAG 6 cut(s) 633, 1116, 1422, 1437, 1686, 1907
DpnI GATC 9 cut(s) 180, 267, 366, 649, 750, 1083, 1467, 1905, 1940
DpnII GATC 9 cut(s) 178, 265, 364, 647, 748, 1081, 1465, 1903, 1938
EciI GGCGGA 1 cut(s) 1988
Eco130I CCWWGG 2 cut(s) 731, 1773
Eco24I GRGCYC 1 cut(s) 1265
Eco57I CTGAAG 5 cut(s) 315, 420, 1455, 1503, 1895
Eco88I CYCGRG 1 cut(s) 1651
EcoRII CCWGG 3 cut(s) 812, 977, 1941
EcoT14I CCWWGG 2 cut(s) 731, 1773
EcoT38I GRGCYC 1 cut(s) 1265
ErhI CCWWGG 2 cut(s) 731, 1773
Esp3I CGTCTC 1 cut(s) 479
FaeI CATG 3 cut(s) 1004, 1169, 1466
FaqI GGGAC 1 cut(s) 830
FatI CATG 3 cut(s) 1000, 1165, 1462
Fnu4HI GCNGC 2 cut(s) 62, 1233
FokI GGATG 6 cut(s) 140, 185, 911, 1439, 1510, 1651
FriOI GRGCYC 1 cut(s) 1265
Fsp4HI GCNGC 2 cut(s) 62, 1233
FspBI CTAG 1 cut(s) 182
GlaI GCGC 1 cut(s) 1223
GluI GCNGC 2 cut(s) 62, 1233
GsaI CCCAGC 1 cut(s) 2025
GsuI CTGGAG 2 cut(s) 1575, 1614
HaeIII GGCC 3 cut(s) 872, 1215, 1792
HhaI GCGC 1 cut(s) 1224
Hin1II CATG 3 cut(s) 1004, 1169, 1466
Hin6I GCGC 1 cut(s) 1222
HinP1I GCGC 1 cut(s) 1222
HincII GTYRAC 2 cut(s) 1614, 1843
HindII GTYRAC 2 cut(s) 1614, 1843
HinfI GANTC 9 cut(s) 736, 1282, 1304, 1346, 1478, 1538, 1649, 1654, 1828
HphI GGTGA 4 cut(s) 17, 158, 353, 1855
Hpy166II GTNNAC 5 cut(s) 394, 662, 1328, 1614, 1843
Hpy188I TCNGA 7 cut(s) 400, 1351, 1423, 1447, 1474, 1483, 1875
Hpy188III TCNNGA 7 cut(s) 182, 269, 964, 1275, 1412, 1527, 1726
Hpy8I GTNNAC 5 cut(s) 394, 662, 1328, 1614, 1843
HpyCH4III ACNGT 7 cut(s) 19, 40, 50, 1180, 1573, 1646, 1723
HpyCH4IV ACGT 2 cut(s) 760, 1510
HpyCH4V TGCA 4 cut(s) 1136, 1160, 1817, 1997
HpyF10VI GCNNNNNNNGC 5 cut(s) 638, 1166, 1221, 1550, 1970
HpyF3I CTNAG 6 cut(s) 633, 1116, 1422, 1437, 1686, 1907
HpySE526I ACGT 2 cut(s) 760, 1510
Hsp92II CATG 3 cut(s) 1004, 1169, 1466
HspAI GCGC 1 cut(s) 1222
Kzo9I GATC 9 cut(s) 178, 265, 364, 647, 748, 1081, 1465, 1903, 1938
LguI GCTCTTC 1 cut(s) 1941
LmnI GCTCC 1 cut(s) 721
Lsp1109I GCAGC 1 cut(s) 1244
LweI GCATC 5 cut(s) 800, 1422, 1804, 1888, 1984
MaeI CTAG 1 cut(s) 182
MaeII ACGT 2 cut(s) 760, 1510
MaeIII GTNAC 3 cut(s) 968, 1065, 1646
MalI GATC 9 cut(s) 180, 267, 366, 649, 750, 1083, 1467, 1905, 1940
MbiI CCGCTC 1 cut(s) 766
MboI GATC 9 cut(s) 178, 265, 364, 647, 748, 1081, 1465, 1903, 1938
MflI RGATCY 1 cut(s) 178
MhlI GDGCHC 1 cut(s) 1265
MluCI AATT 8 cut(s) 414, 435, 924, 1073, 1310, 1784, 1892, 1958
MlyI GAGTC 5 cut(s) 730, 1291, 1355, 1643, 1663
MmeI TCCRAC 3 cut(s) 280, 1329, 1736
MseI TTAA 1 cut(s) 713
MslI CAYNNNNRTG 2 cut(s) 1005, 1178
MspR9I CCNGG 3 cut(s) 814, 979, 1943
Mva1269I GAATGC 1 cut(s) 1441
MvaI CCWGG 3 cut(s) 814, 979, 1943
MwoI GCNNNNNNNGC 5 cut(s) 638, 1166, 1221, 1550, 1970
NdeII GATC 9 cut(s) 178, 265, 364, 647, 748, 1081, 1465, 1903, 1938
NlaIII CATG 3 cut(s) 1004, 1169, 1466
NlaIV GGNNCC 3 cut(s) 31, 231, 723
NmeAIII GCCGAG 1 cut(s) 1867
NmuCI GTSAC 1 cut(s) 1646
OliI CACNNNNGTG 1 cut(s) 1178
PaeR7I CTCGAG 1 cut(s) 1651
PciSI GCTCTTC 1 cut(s) 1941
PcsI WCGNNNNNNNCGW 1 cut(s) 757
PctI GAATGC 1 cut(s) 1441
PfeI GAWTC 4 cut(s) 1304, 1478, 1538, 1828
PfoI TCCNGGA 1 cut(s) 1941
PkrI GCNGC 2 cut(s) 63, 1234
PleI GAGTC 5 cut(s) 730, 1290, 1354, 1643, 1662
PpsI GAGTC 5 cut(s) 730, 1290, 1354, 1643, 1662
Ppu21I YACGTR 1 cut(s) 761
PshAI GACNNNNGTC 1 cut(s) 1653
Psp6I CCWGG 3 cut(s) 812, 977, 1941
PspFI CCCAGC 1 cut(s) 2021
PspGI CCWGG 3 cut(s) 812, 977, 1941
PspN4I GGNNCC 3 cut(s) 31, 231, 723
PspPI GGNCC 1 cut(s) 1213
PspXI VCTCGAGB 1 cut(s) 1651
PsuI RGATCY 1 cut(s) 178
RsaI GTAC 4 cut(s) 759, 844, 1185, 1327
RsaNI GTAC 4 cut(s) 758, 843, 1184, 1326
RseI CAYNNNNRTG 2 cut(s) 1005, 1178
SapI GCTCTTC 1 cut(s) 1941
SaqAI TTAA 1 cut(s) 713
SatI GCNGC 2 cut(s) 62, 1233
Sau3AI GATC 9 cut(s) 178, 265, 364, 647, 748, 1081, 1465, 1903, 1938
Sau96I GGNCC 1 cut(s) 1213
SchI GAGTC 5 cut(s) 730, 1291, 1355, 1643, 1663
ScrFI CCNGG 3 cut(s) 814, 979, 1943
SduI GDGCHC 1 cut(s) 1265
SfaNI GCATC 5 cut(s) 800, 1422, 1804, 1888, 1984
SfcI CTRYAG 2 cut(s) 795, 1569
Sfr274I CTCGAG 1 cut(s) 1651
SlaI CTCGAG 1 cut(s) 1651
SmiMI CAYNNNNRTG 2 cut(s) 1005, 1178
SmlI CTYRAG 3 cut(s) 1410, 1651, 1669
SmoI CTYRAG 3 cut(s) 1410, 1651, 1669
Sse9I AATT 8 cut(s) 414, 435, 924, 1073, 1310, 1784, 1892, 1958
SsiI CCGC 6 cut(s) 62, 455, 766, 1101, 1270, 1973
SspMI CTAG 1 cut(s) 182
StyD4I CCNGG 3 cut(s) 812, 977, 1941
StyI CCWWGG 2 cut(s) 731, 1773
TaaI ACNGT 7 cut(s) 19, 40, 50, 1180, 1573, 1646, 1723
TaiI ACGT 2 cut(s) 763, 1513
TaqI TCGA 4 cut(s) 650, 1089, 1205, 1652
TasI AATT 8 cut(s) 414, 435, 924, 1073, 1310, 1784, 1892, 1958
TatI WGTACW 1 cut(s) 1325
TauI GCSGC 1 cut(s) 64
TfiI GAWTC 4 cut(s) 1304, 1478, 1538, 1828
Tru1I TTAA 1 cut(s) 713
Tru9I TTAA 1 cut(s) 713
TscAI CASTG 3 cut(s) 79, 855, 1651
TseFI GTSAC 1 cut(s) 1646
TseI GCWGC 1 cut(s) 1232
Tsp45I GTSAC 1 cut(s) 1646
TspGWI ACGGA 1 cut(s) 503
TspRI CASTG 3 cut(s) 79, 855, 1651
XapI RAATTY 1 cut(s) 1073
XbaI TCTAGA 1 cut(s) 181
XhoI CTCGAG 1 cut(s) 1651
XspI CTAG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.