RchiOBHm_Chr5g0053741

DEK C terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0010234
Physical Location & Seq
Reverse (-)
56088020 .. 56093774
5755 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33100

Sequence Viewer

Length: 1182 bp
ATGAAAGTGGCCTTCAAGTTATCAAGGAAGAAAATGGATGATACCCTCAAACTACTTCATACAATTCTTTTTGGGGGAAGGAGAGGAAAGGCAGTTCAGGTCAAGAGTAACATATCCAGGTTTTCTGGTTTTGTGTGGCATGGAAATGAGGACAAGCAAAAGAGTAAAGTAAAAGAAAAAATGGACAAGTGTAATAAAGAGAAGTTACTGGAATTTTGTGATCTGTTTGACTTACCAACCGCCAAAGCTACTTCTAAGAAGGAGGATATAGTTGCGAAGCTGATAGACTTTTTGGTTGCACCTCATGCGACCACTACTGTGGTACTTGGAGAAAAAGAGCAGTCGAGTAAGGGCCAAAAGCGCAAGAGGGCAGCTAAAGGCAGTTCATCAACATCTGGGGGCTCAAAGCGGTCAGGAAAGAGTCGTAGGAAGAATGATGATGATTCAAAATTGGAGGATAAGAGTACACCAGATACAGAAGACGAGTCGGAGGAAGAGGAGAAAGAAGAAGACGATGAAAAGGTAGAGGAGGAAATGGAAGATGTAGCTCAAGAAAAGTCTGAGGATGAGATGCCTGAGCATTCAGATAGTGAAGAGAAACATGATCCTTCAGATGATTCTGAAGAAGAAGTGGAAAAAAAGAAGCCACGTTCAAAATCATCATCCAGAAAGAAGGAATCTGCTGGAAAAGCTAAAACTAAAAAAGCTACAGTTTCTCCTAAATCTACTCCACCAGCTAATAAACCAAAGAAGTCAACACCAAAACGCACTCCAGTTGATGATGACAGTGACACGAGTCCAAAGCCATCCTCAAGGAAGAAGAGAACTGAGCGAGTGTCAAAAGCCTCAACTCCAACAAAATCTGCCTTGAAAGAAAAAACTGGGAAAAAAGTTGCTAAAGGGAAGGACAAGACCAAGGAGGAAAAATTGAGGCCAAGTGATGATGAGTTGAGAGATGCAATATGTGAGATTCTCAAAGAAGTTGACTTCAATACGGCTACTTTCACCGACATTCTGAAGCATCTTGCTCGGCAATTTGATACTGATCTCAGCGTGAGAAAGTCATCTATAAAGGTAATGATCCAGGAAGAGCTTACCAAATTAGCTGATGAGGCGGACGAGGAAGATGGAGATGATGCCGAGAAAGATGAACCCCAGTCTGCTGGGGAGGTGGAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DEK_C

Protein Analysis

393

Amino Acids

44.02

Weight (kDa)

6.68

Isoelectric Point (pI)

55.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEK_C PF08766 312 - 365 3.5e-14 DEK C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010234)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26630 AT4G26630 AT5G55660
fragaria_vesca FvH4_3g29362
malus_domestica MD03G1183500.v1.1 MD11G1200600.v1.1
prunus_persica Prupe.4G242600_v2.0.a1
pyrus_communis pycom03g13710 pycom11g17300
rosa_chinensis RchiOBHm_Chr5g0053741
rosa_laevigata RLG00000034900
rosa_multiflora Rmu_sc0001759.1_g000043
rosa_roxburghii Rroxscaffold_1G00026850
rosa_rugosa Rorug05G0281900 Rorug05G0282000 Rorug05G0282100
rosa_samantha Rh5AG352800 Rh5BG364500 Rh5CG389400 Rh5DG379300
rosa_wichuraiana Rw5G033330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 240, 409, 1115
AclWI GGATC 2 cut(s) 599, 1075
AcsI RAATTY 1 cut(s) 212
AcuI CTGAAG 3 cut(s) 594, 642, 1037
AfaI GTAC 2 cut(s) 324, 466
AgsI TTSAA 5 cut(s) 16, 447, 654, 871, 991
AjnI CCWGG 2 cut(s) 116, 1083
AleI CACNNNNGTG 1 cut(s) 317
AloI GAACNNNNNNTCC 2 cut(s) 78, 110
AluBI AGCT 9 cut(s) 248, 280, 374, 548, 692, 707, 737, 1093, 1106
AluI AGCT 9 cut(s) 248, 280, 374, 548, 692, 707, 737, 1093, 1106
AlwI GGATC 2 cut(s) 599, 1075
AoxI GGCC 3 cut(s) 9, 352, 932
ApeKI GCWGC 1 cut(s) 371
ApoI RAATTY 1 cut(s) 212
AspLEI GCGC 1 cut(s) 363
AspS9I GGNCC 1 cut(s) 352
AsuHPI GGTGA 1 cut(s) 997
BanII GRGCYC 1 cut(s) 404
BauI CACGAG 1 cut(s) 793
BbsI GAAGAC 2 cut(s) 486, 516
BbvI GCAGC 1 cut(s) 383
BccI CCATC 2 cut(s) 814, 1121
BceAI ACGGC 1 cut(s) 1011
BcgI CGANNNNNNTGC 2 cut(s) 1010, 1044
BciT130I CCWGG 2 cut(s) 118, 1085
BfmI CTRYAG 1 cut(s) 708
BisI GCNGC 1 cut(s) 372
BlsI GCNGC 1 cut(s) 373
Bme1390I CCNGG 2 cut(s) 118, 1085
BmgT120I GGNCC 1 cut(s) 352
BmrFI CCNGG 2 cut(s) 118, 1085
BmrI ACTGGG 2 cut(s) 891, 1150
BmsI GCATC 4 cut(s) 561, 946, 1030, 1126
BmuI ACTGGG 2 cut(s) 891, 1150
BoxI GACNNNNGTC 1 cut(s) 795
BpiI GAAGAC 2 cut(s) 486, 516
BpmI CTGGAG 1 cut(s) 756
Bpu10I CCTNAGC 1 cut(s) 576
BpuEI CTTGAG 2 cut(s) 534, 796
BsaBI GATNNNNATC 1 cut(s) 1044
BsaJI CCNNGG 1 cut(s) 915
BsaXI ACNNNNNCTCC 2 cut(s) 700, 730
Bse1I ACTGG 4 cut(s) 213, 773, 886, 1156
Bse8I GATNNNNATC 1 cut(s) 1044
BseBI CCWGG 2 cut(s) 118, 1085
BseDI CCNNGG 1 cut(s) 915
BseGI GGATG 4 cut(s) 43, 571, 662, 806
BseJI GATNNNNATC 1 cut(s) 1044
BseMII CTCAG 4 cut(s) 552, 567, 819, 1063
BseNI ACTGG 4 cut(s) 213, 773, 886, 1156
BseRI GAGGAG 2 cut(s) 512, 542
BseXI GCAGC 1 cut(s) 383
BseYI CCCAGC 1 cut(s) 1163
BshFI GGCC 3 cut(s) 11, 354, 934
BsmI GAATGC 1 cut(s) 580
BsnI GGCC 3 cut(s) 11, 354, 934
Bsp1286I GDGCHC 1 cut(s) 404
Bsp143I GATC 4 cut(s) 220, 604, 1045, 1080
BspACI CCGC 3 cut(s) 240, 409, 1115
BspANI GGCC 3 cut(s) 11, 354, 934
BspCNI CTCAG 4 cut(s) 553, 568, 820, 1062
BspPI GGATC 2 cut(s) 599, 1075
BspQI GCTCTTC 1 cut(s) 1083
BsrI ACTGG 4 cut(s) 213, 773, 886, 1156
BssECI CCNNGG 1 cut(s) 915
BssMI GATC 4 cut(s) 220, 604, 1045, 1080
BssSI CACGAG 1 cut(s) 793
BssT1I CCWWGG 1 cut(s) 915
Bst2BI CACGAG 1 cut(s) 793
Bst2UI CCWGG 2 cut(s) 118, 1085
Bst4CI ACNGT 3 cut(s) 319, 712, 788
Bst6I CTCTTC 4 cut(s) 489, 588, 815, 1083
BstAPI GCANNNNNTGC 1 cut(s) 305
BstDEI CTNAG 5 cut(s) 255, 561, 576, 828, 1049
BstF5I GGATG 4 cut(s) 43, 571, 662, 806
BstHHI GCGC 1 cut(s) 363
BstKTI GATC 4 cut(s) 223, 607, 1048, 1083
BstMBI GATC 4 cut(s) 220, 604, 1045, 1080
BstMWI GCNNNNNNNGC 4 cut(s) 305, 360, 689, 1112
BstNI CCWGG 2 cut(s) 118, 1085
BstPAI GACNNNNGTC 1 cut(s) 795
BstSCI CCNGG 2 cut(s) 116, 1083
BstSFI CTRYAG 1 cut(s) 708
BstV1I GCAGC 1 cut(s) 383
BstV2I GAAGAC 2 cut(s) 486, 516
BstXI CCANNNNNNTGG 2 cut(s) 319, 1163
BsuRI GGCC 3 cut(s) 11, 354, 934
BtsCI GGATG 4 cut(s) 43, 571, 662, 806
BtsIMutI CAGTG 1 cut(s) 793
CfoI GCGC 1 cut(s) 363
Cfr13I GGNCC 1 cut(s) 352
Csp6I GTAC 2 cut(s) 323, 465
CviAII CATG 3 cut(s) 140, 305, 602
CviQI GTAC 2 cut(s) 323, 465
DdeI CTNAG 5 cut(s) 255, 561, 576, 828, 1049
DpnI GATC 4 cut(s) 222, 606, 1047, 1082
DpnII GATC 4 cut(s) 220, 604, 1045, 1080
Eam1104I CTCTTC 4 cut(s) 489, 588, 815, 1083
EarI CTCTTC 4 cut(s) 489, 588, 815, 1083
EciI GGCGGA 1 cut(s) 1130
Eco130I CCWWGG 1 cut(s) 915
Eco24I GRGCYC 1 cut(s) 404
Eco57I CTGAAG 3 cut(s) 594, 642, 1037
EcoRII CCWGG 2 cut(s) 116, 1083
EcoT14I CCWWGG 1 cut(s) 915
EcoT38I GRGCYC 1 cut(s) 404
ErhI CCWWGG 1 cut(s) 915
FaeI CATG 3 cut(s) 143, 308, 605
FaiI YATR 8 cut(s) 60, 113, 141, 269, 306, 603, 964, 1070
FatI CATG 3 cut(s) 139, 304, 601
Fnu4HI GCNGC 1 cut(s) 372
FokI GGATG 4 cut(s) 50, 578, 649, 793
FriOI GRGCYC 1 cut(s) 404
Fsp4HI GCNGC 1 cut(s) 372
GlaI GCGC 1 cut(s) 362
GluI GCNGC 1 cut(s) 372
GsaI CCCAGC 1 cut(s) 1167
GsuI CTGGAG 1 cut(s) 756
HaeIII GGCC 3 cut(s) 11, 354, 934
HhaI GCGC 1 cut(s) 363
Hin1II CATG 3 cut(s) 143, 308, 605
Hin6I GCGC 1 cut(s) 361
HinP1I GCGC 1 cut(s) 361
HincII GTYRAC 2 cut(s) 756, 985
HindII GTYRAC 2 cut(s) 756, 985
HinfI GANTC 7 cut(s) 421, 443, 485, 617, 677, 796, 970
HphI GGTGA 1 cut(s) 997
Hpy166II GTNNAC 3 cut(s) 467, 756, 985
Hpy188I TCNGA 6 cut(s) 490, 562, 586, 613, 622, 1017
Hpy188III TCNNGA 4 cut(s) 103, 414, 551, 666
Hpy8I GTNNAC 3 cut(s) 467, 756, 985
HpyAV CCTTC 6 cut(s) 22, 72, 253, 618, 667, 898
HpyCH4III ACNGT 3 cut(s) 319, 712, 788
HpyCH4IV ACGT 1 cut(s) 649
HpyCH4V TGCA 2 cut(s) 299, 959
HpyF10VI GCNNNNNNNGC 4 cut(s) 305, 360, 689, 1112
HpyF3I CTNAG 5 cut(s) 255, 561, 576, 828, 1049
HpySE526I ACGT 1 cut(s) 649
Hsp92II CATG 3 cut(s) 143, 308, 605
HspAI GCGC 1 cut(s) 361
Kzo9I GATC 4 cut(s) 220, 604, 1045, 1080
LguI GCTCTTC 1 cut(s) 1083
Lsp1109I GCAGC 1 cut(s) 383
LweI GCATC 4 cut(s) 561, 946, 1030, 1126
MaeII ACGT 1 cut(s) 649
MaeIII GTNAC 3 cut(s) 107, 204, 788
MalI GATC 4 cut(s) 222, 606, 1047, 1082
MboI GATC 4 cut(s) 220, 604, 1045, 1080
MhlI GDGCHC 1 cut(s) 404
MluCI AATT 6 cut(s) 63, 212, 449, 926, 1034, 1100
MlyI GAGTC 3 cut(s) 430, 494, 805
MmeI TCCRAC 2 cut(s) 468, 878
MslI CAYNNNNRTG 2 cut(s) 144, 317
MspR9I CCNGG 2 cut(s) 118, 1085
Mva1269I GAATGC 1 cut(s) 580
MvaI CCWGG 2 cut(s) 118, 1085
MwoI GCNNNNNNNGC 4 cut(s) 305, 360, 689, 1112
NdeII GATC 4 cut(s) 220, 604, 1045, 1080
NlaIII CATG 3 cut(s) 143, 308, 605
NmeAIII GCCGAG 2 cut(s) 1009, 1165
NmuCI GTSAC 1 cut(s) 788
OliI CACNNNNGTG 1 cut(s) 317
PciSI GCTCTTC 1 cut(s) 1083
PctI GAATGC 1 cut(s) 580
PfeI GAWTC 4 cut(s) 443, 617, 677, 970
PfoI TCCNGGA 1 cut(s) 1083
PkrI GCNGC 1 cut(s) 373
PleI GAGTC 3 cut(s) 429, 493, 804
PpsI GAGTC 3 cut(s) 429, 493, 804
PshAI GACNNNNGTC 1 cut(s) 795
Psp6I CCWGG 2 cut(s) 116, 1083
PspFI CCCAGC 1 cut(s) 1163
PspGI CCWGG 2 cut(s) 116, 1083
PspPI GGNCC 1 cut(s) 352
RsaI GTAC 2 cut(s) 324, 466
RsaNI GTAC 2 cut(s) 323, 465
RseI CAYNNNNRTG 2 cut(s) 144, 317
SapI GCTCTTC 1 cut(s) 1083
SatI GCNGC 1 cut(s) 372
Sau3AI GATC 4 cut(s) 220, 604, 1045, 1080
Sau96I GGNCC 1 cut(s) 352
SchI GAGTC 3 cut(s) 430, 494, 805
ScrFI CCNGG 2 cut(s) 118, 1085
SduI GDGCHC 1 cut(s) 404
SfaNI GCATC 4 cut(s) 561, 946, 1030, 1126
SfcI CTRYAG 1 cut(s) 708
SmiMI CAYNNNNRTG 2 cut(s) 144, 317
SmlI CTYRAG 2 cut(s) 549, 811
SmoI CTYRAG 2 cut(s) 549, 811
Sse9I AATT 6 cut(s) 63, 212, 449, 926, 1034, 1100
SsiI CCGC 3 cut(s) 240, 409, 1115
StyD4I CCNGG 2 cut(s) 116, 1083
StyI CCWWGG 1 cut(s) 915
TaaI ACNGT 3 cut(s) 319, 712, 788
TaiI ACGT 1 cut(s) 652
TaqI TCGA 1 cut(s) 344
TasI AATT 6 cut(s) 63, 212, 449, 926, 1034, 1100
TatI WGTACW 1 cut(s) 464
TfiI GAWTC 4 cut(s) 443, 617, 677, 970
TscAI CASTG 1 cut(s) 793
TseFI GTSAC 1 cut(s) 788
TseI GCWGC 1 cut(s) 371
Tsp45I GTSAC 1 cut(s) 788
TspDTI ATGAA 5 cut(s) 17, 47, 375, 531, 1164
TspRI CASTG 1 cut(s) 793
XapI RAATTY 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.