MD11G1200600.v1.1

DEK C terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0010234
Physical Location & Seq
Reverse (-)
28968168 .. 28975410
7243 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1200600.v1.1.491

Sequence Viewer

Length: 2013 bp
ATGGGTGAAGAAGACACGGTGGCCAATGACACTGAAATGGTGGCAAATGGGACTAGCCAGTTAGGGAAAACCAGCAAAGATGTGACTTTGAAAAAAGGGGACGAAAAGGTTGAGGTAAAAGAAATGGATGTATATAAGAAAGGTGATAAGAAAGATGAAGCAGAGAAAAGGAATGAAGGCCAAGAGACCCATAGAAGCAAAGATGAAAAAGTGAAAGACGAAGCAGAGGAACCCAAGGTTGAGGAAATAAAAGAGGAAATTGGTCCAAATGAAGTTAAGAAAGATGATGAGAATGCTCTGGTTGAGAATGGAAGCAAAGGTCAAAAGGTGAAAGAAACAGAGGAACCCATAGTTGAGGAAAAGGAAGAAGAAACTGCTCCAAATGAAAAAGTGGAGACCGAAGAAAAGAAGCAAATTGAAGTGGAAGAAGAGAAGGTGGATGGGCTTCAGGTGAAGGAAGAGAAGGAAAAAGTGAAGGTAGAAGAGAAGGTAGAAGACAAGGAAGAAGATAAGGAAGAAGAGATGGAAGAAGAGAAGGAAGAAGATAAGGAAGAAGAGAAGGAAGAAGATAAGGAAGAAGAAGCTAAGATGGAGAAGGGGTCAAGGAAGCGTGGAAAAGGAAAGAGTGCGGAGAAAACCAAAGAGAAGAAAAGGAAAGTTGCAGAAAAGAAGGAGCCAGAGCAAAGGACTCCTGCTATTGATCGCCCTGTTCGTGAGCGGAAATCAGTTGAAAGGCTGGTGGCAACTATTGAAAAGGATAATGCCAGGGAATTCCATATAGAGAAGGGACGTGGTACGCCATTGAAAGACATACCTAATGTGGCTTTCAAGTTGTCAAGAAGGAAAATCGATGATAACTTAAAACTACTTCATACTATTCTTTTTGGAAGGAGAGGAAAGGCACTTGAGGTCAAGAGTAATATATCCAGGTTCTCTGGTTTTGTGTGGCGTGGAAATGAGGACAAGCAAAATACTAAAGTAAAAGAAAAACTTGACAAGTGTAATAAAGAGAAGTTATTGGACTTCTGTGATCTGCTCAATGTATCAGTTTCCAAAGCTACTACTAGGAAGGAGGATATAGTTGCAAAGCTTATTGAGTTTTTGGTGGCTCCTCATGCTACAAGTGATGTCCTCCTTGCAGAAAAAGAGACGCCAACTAAGGGCAAAAAGCGCAAGAGGGCAACTAAAGGAAGTCCTTCAACCTCTGGGGGCACAAGTTCAAAGCGCTCAGCAAAGAATCGTAGAAAGAATGATGATGATTCAAAATTGGGGGACAAGAGTACACCAGATACAGAAGATGAGTCAGAGGAAGATGTACAAGAAGAAGAAGAAAATGATGAAGACGAAAATGAAAATGGCATTCCAGAGAAGTCAGAGGATGTTATGCCTGAGCATTCGGAAAGTGAGGAGAAACATGATTCTTCCGATGATACTGACAAAGAAGTGGAAAAGAAAAAGCCACGGTCAAAATCATCATCATCCAGAAAGAAGGAATCTTCTGGAAAAGCTGGAACAAAAAAATCCGCAGTTTCTGCTAAATCTACTCCACCACCTAGTAAAAGACAAAAGAAGTCATCATTAAAACGCACTCCGGTTGATGATGACAGTGATATGAGTCCAAAGGTATCCTCAAGGAAGAAGAAAAATGTGAAAGTGTCCAAAGCATCAACTCCAACAAAATCTGCCTCAAAGGAAAAAACTGGGAAAAAAGTTGCTAAAGTTAAGGACAAGACCAAGGAGGAAAAATTGAGGCCAACTGATGACAATTTGAGAGATGCAATATGTCAAATTCTCAAAGAAGTTGACTTCAATACGGCTACTTTCACTGACATTTTGAAGCAACTTGCGGGGCAATTCGATGCAGATCTCAGCCTGAGAAAGTCAGCCATAAAGGTCATGATCCAGGAAGAGCTTACTAAATTGGCTGATGAGGCAGATGAAGAAGACGAAGAAGAAGGGGATGCAGAGAAAGACGAAACCCAGAGTGCTAAGGAAGAGAAGGTCGAAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DEK_C

Protein Analysis

671

Amino Acids

75.88

Weight (kDa)

5.29

Isoelectric Point (pI)

51.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEK_C PF08766 585 - 638 6.5e-13 DEK C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010234)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26630 AT4G26630 AT5G55660
fragaria_vesca FvH4_3g29362
malus_domestica MD03G1183500.v1.1 MD11G1200600.v1.1
prunus_persica Prupe.4G242600_v2.0.a1
pyrus_communis pycom03g13710 pycom11g17300
rosa_chinensis RchiOBHm_Chr5g0053741
rosa_laevigata RLG00000034900
rosa_multiflora Rmu_sc0001759.1_g000043
rosa_roxburghii Rroxscaffold_1G00026850
rosa_rugosa Rorug05G0281900 Rorug05G0282000 Rorug05G0282100
rosa_samantha Rh5AG352800 Rh5BG364500 Rh5CG389400 Rh5DG379300
rosa_wichuraiana Rw5G033330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 718
AciI CCGC 4 cut(s) 629, 718, 1524, 1847
AclWI GGATC 1 cut(s) 1894
AcoI YGGCCR 1 cut(s) 21
AcsI RAATTY 2 cut(s) 770, 1788
AcuI CTGAAG 1 cut(s) 431
AcyI GRCGYC 1 cut(s) 1151
AfaI GTAC 3 cut(s) 796, 1282, 1317
AfeI AGCGCT 1 cut(s) 1226
AfiI CCNNNNNNNGG 1 cut(s) 1160
AjiI CACGTC 1 cut(s) 791
AjnI CCWGG 3 cut(s) 764, 926, 1902
AluBI AGCT 5 cut(s) 584, 1058, 1090, 1508, 1912
AluI AGCT 5 cut(s) 584, 1058, 1090, 1508, 1912
Alw26I GTCTC 3 cut(s) 179, 389, 1142
AlwI GGATC 1 cut(s) 1894
AlwNI CAGNNNCTG 1 cut(s) 1532
Aor51HI AGCGCT 1 cut(s) 1226
AoxI GGCC 3 cut(s) 21, 178, 1751
ApoI RAATTY 2 cut(s) 770, 1788
Asp700I GAANNNNTTC 1 cut(s) 1195
AspLEI GCGC 2 cut(s) 1173, 1227
AspS9I GGNCC 1 cut(s) 263
AsuHPI GGTGA 4 cut(s) 17, 155, 340, 463
AvaII GGWCC 1 cut(s) 263
BaeGI GKGCMC 1 cut(s) 1214
BalI TGGCCA 1 cut(s) 23
BbsI GAAGAC 4 cut(s) 18, 501, 1347, 1950
BccI CCATC 3 cut(s) 434, 517, 583
BceAI ACGGC 1 cut(s) 1830
BciT130I CCWGG 3 cut(s) 766, 928, 1904
BciVI GTATCC 1 cut(s) 1636
BcoDI GTCTC 3 cut(s) 179, 389, 1142
BfaI CTAG 3 cut(s) 54, 1065, 1554
BfoI RGCGCY 1 cut(s) 1228
BfuI GTATCC 1 cut(s) 1636
BglII AGATCT 1 cut(s) 1864
BlpI GCTNAGC 1 cut(s) 1228
Bme1390I CCNGG 3 cut(s) 766, 928, 1904
Bme18I GGWCC 1 cut(s) 263
BmgBI CACGTC 1 cut(s) 791
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 4 cut(s) 231, 345, 675, 1110
BmrFI CCNGG 3 cut(s) 766, 928, 1904
BmrI ACTGGG 1 cut(s) 1710
BmsI GCATC 4 cut(s) 1673, 1765, 1849, 1951
BmuI ACTGGG 1 cut(s) 1710
BpiI GAAGAC 4 cut(s) 18, 501, 1347, 1950
Bpu10I CCTNAGC 2 cut(s) 1389, 1989
Bpu1102I GCTNAGC 1 cut(s) 1228
BpuEI CTTGAG 2 cut(s) 926, 1615
Bsa29I ATCGAT 1 cut(s) 849
BsaBI GATNNNNATC 1 cut(s) 1863
BsaHI GRCGYC 1 cut(s) 1151
BsaI GGTCTC 2 cut(s) 179, 389
BsaJI CCNNGG 4 cut(s) 234, 765, 1460, 1734
BsaWI WCCGGW 1 cut(s) 1591
BsaXI ACNNNNNCTCC 2 cut(s) 584, 614
Bsc4I CCNNNNNNNGG 1 cut(s) 1160
Bse1I ACTGG 2 cut(s) 58, 1705
Bse8I GATNNNNATC 1 cut(s) 1863
BseBI CCWGG 3 cut(s) 766, 928, 1904
BseCI ATCGAT 1 cut(s) 849
BseDI CCNNGG 4 cut(s) 234, 765, 1460, 1734
BseGI GGATG 5 cut(s) 133, 445, 1384, 1478, 1966
BseJI GATNNNNATC 1 cut(s) 1863
BseLI CCNNNNNNNGG 1 cut(s) 1160
BseMII CTCAG 4 cut(s) 1242, 1380, 1865, 1882
BseNI ACTGG 2 cut(s) 58, 1705
BseRI GAGGAG 2 cut(s) 1101, 1421
BseSI GKGCMC 1 cut(s) 1214
BshFI GGCC 3 cut(s) 23, 180, 1753
BshVI ATCGAT 1 cut(s) 849
BsiSI CCGG 1 cut(s) 1592
BslFI GGGAC 4 cut(s) 64, 113, 801, 1286
BslI CCNNNNNNNGG 1 cut(s) 1160
BsmAI GTCTC 3 cut(s) 179, 389, 1142
BsmBI CGTCTC 1 cut(s) 1142
BsmFI GGGAC 4 cut(s) 64, 113, 801, 1286
BsmI GAATGC 3 cut(s) 298, 1359, 1393
BsnI GGCC 3 cut(s) 23, 180, 1753
Bso31I GGTCTC 2 cut(s) 179, 389
Bsp1286I GDGCHC 1 cut(s) 1214
Bsp1407I TGTACA 1 cut(s) 1315
Bsp143I GATC 4 cut(s) 700, 1030, 1864, 1899
Bsp1720I GCTNAGC 1 cut(s) 1228
BspACI CCGC 4 cut(s) 629, 718, 1524, 1847
BspANI GGCC 3 cut(s) 23, 180, 1753
BspCNI CTCAG 4 cut(s) 1241, 1381, 1866, 1881
BspDI ATCGAT 1 cut(s) 849
BspHI TCATGA 1 cut(s) 1896
BspLI GGNNCC 4 cut(s) 231, 345, 675, 1110
BspPI GGATC 1 cut(s) 1894
BspQI GCTCTTC 1 cut(s) 1902
BspTNI GGTCTC 2 cut(s) 179, 389
BsrBI CCGCTC 1 cut(s) 718
BsrGI TGTACA 1 cut(s) 1315
BsrI ACTGG 2 cut(s) 58, 1705
BssECI CCNNGG 4 cut(s) 234, 765, 1460, 1734
BssMI GATC 4 cut(s) 700, 1030, 1864, 1899
BssNI GRCGYC 1 cut(s) 1151
BssT1I CCWWGG 2 cut(s) 234, 1734
Bst2UI CCWGG 3 cut(s) 766, 928, 1904
Bst4CI ACNGT 3 cut(s) 19, 1464, 1607
Bst6I CTCTTC 8 cut(s) 423, 453, 477, 513, 525, 549, 1902, 1989
BstACI GRCGYC 1 cut(s) 1151
BstAPI GCANNNNNTGC 1 cut(s) 1532
BstAUI TGTACA 1 cut(s) 1315
BstDEI CTNAG 7 cut(s) 585, 1158, 1228, 1389, 1868, 1874, 1989
BstDSI CCRYGG 1 cut(s) 1460
BstF5I GGATG 5 cut(s) 133, 445, 1384, 1478, 1966
BstH2I RGCGCY 1 cut(s) 1228
BstHHI GCGC 2 cut(s) 1173, 1227
BstKTI GATC 4 cut(s) 703, 1033, 1867, 1902
BstMAI GTCTC 3 cut(s) 179, 389, 1142
BstMBI GATC 4 cut(s) 700, 1030, 1864, 1899
BstMWI GCNNNNNNNGC 4 cut(s) 1115, 1170, 1532, 1931
BstNI CCWGG 3 cut(s) 766, 928, 1904
BstSCI CCNGG 3 cut(s) 764, 926, 1902
BstSLI GKGCMC 1 cut(s) 1214
BstV2I GAAGAC 4 cut(s) 18, 501, 1347, 1950
BstX2I RGATCY 1 cut(s) 1864
BstYI RGATCY 1 cut(s) 1864
Bsu15I ATCGAT 1 cut(s) 849
BsuI GTATCC 1 cut(s) 1636
BsuRI GGCC 3 cut(s) 23, 180, 1753
BsuTUI ATCGAT 1 cut(s) 849
BtgI CCRYGG 1 cut(s) 1460
BtrI CACGTC 1 cut(s) 791
BtsCI GGATG 5 cut(s) 133, 445, 1384, 1478, 1966
BtsIMutI CAGTG 3 cut(s) 30, 1612, 1824
CaiI CAGNNNCTG 1 cut(s) 1532
CciI TCATGA 1 cut(s) 1896
CfoI GCGC 2 cut(s) 1173, 1227
Cfr13I GGNCC 1 cut(s) 263
ClaI ATCGAT 1 cut(s) 849
CseI GACGC 1 cut(s) 1159
Csp6I GTAC 3 cut(s) 795, 1281, 1316
CviAII CATG 3 cut(s) 1115, 1415, 1897
CviQI GTAC 3 cut(s) 795, 1281, 1316
DdeI CTNAG 7 cut(s) 585, 1158, 1228, 1389, 1868, 1874, 1989
DpnI GATC 4 cut(s) 702, 1032, 1866, 1901
DpnII GATC 4 cut(s) 700, 1030, 1864, 1899
EaeI YGGCCR 1 cut(s) 21
Eam1104I CTCTTC 8 cut(s) 423, 453, 477, 513, 525, 549, 1902, 1989
EarI CTCTTC 8 cut(s) 423, 453, 477, 513, 525, 549, 1902, 1989
Eco130I CCWWGG 2 cut(s) 234, 1734
Eco31I GGTCTC 2 cut(s) 179, 389
Eco47I GGWCC 1 cut(s) 263
Eco47III AGCGCT 1 cut(s) 1226
Eco57I CTGAAG 1 cut(s) 431
EcoRI GAATTC 1 cut(s) 770
EcoRII CCWGG 3 cut(s) 764, 926, 1902
EcoT14I CCWWGG 2 cut(s) 234, 1734
ErhI CCWWGG 2 cut(s) 234, 1734
Esp3I CGTCTC 1 cut(s) 1142
FaeI CATG 3 cut(s) 1118, 1418, 1900
FalI AAGNNNNNCTT 2 cut(s) 975, 1007
FaqI GGGAC 4 cut(s) 64, 113, 801, 1286
FatI CATG 3 cut(s) 1114, 1414, 1896
FauI CCCGC 1 cut(s) 1840
FokI GGATG 5 cut(s) 140, 452, 1391, 1465, 1973
FspBI CTAG 3 cut(s) 54, 1065, 1554
GlaI GCGC 2 cut(s) 1172, 1226
HaeII RGCGCY 1 cut(s) 1228
HaeIII GGCC 3 cut(s) 23, 180, 1753
HapII CCGG 1 cut(s) 1592
HgaI GACGC 1 cut(s) 1159
HhaI GCGC 2 cut(s) 1173, 1227
Hin1I GRCGYC 1 cut(s) 1151
Hin1II CATG 3 cut(s) 1118, 1418, 1900
Hin6I GCGC 2 cut(s) 1171, 1225
HinP1I GCGC 2 cut(s) 1171, 1225
HincII GTYRAC 1 cut(s) 1804
HindII GTYRAC 1 cut(s) 1804
HindIII AAGCTT 1 cut(s) 1088
HinfI GANTC 7 cut(s) 688, 1237, 1259, 1301, 1418, 1493, 1615
HpaII CCGG 1 cut(s) 1592
HphI GGTGA 4 cut(s) 17, 155, 340, 463
Hpy166II GTNNAC 2 cut(s) 1283, 1804
Hpy188I TCNGA 4 cut(s) 1306, 1375, 1399, 1426
Hpy188III TCNNGA 7 cut(s) 713, 837, 913, 1364, 1482, 1500, 1897
Hpy8I GTNNAC 2 cut(s) 1283, 1804
HpyCH4III ACNGT 3 cut(s) 19, 1464, 1607
HpyCH4IV ACGT 1 cut(s) 790
HpyCH4V TGCA 6 cut(s) 662, 1085, 1139, 1778, 1862, 1964
HpyF10VI GCNNNNNNNGC 4 cut(s) 1115, 1170, 1532, 1931
HpyF3I CTNAG 7 cut(s) 585, 1158, 1228, 1389, 1868, 1874, 1989
HpySE526I ACGT 1 cut(s) 790
Hsp92I GRCGYC 1 cut(s) 1151
Hsp92II CATG 3 cut(s) 1118, 1418, 1900
HspAI GCGC 2 cut(s) 1171, 1225
Kzo9I GATC 4 cut(s) 700, 1030, 1864, 1899
LguI GCTCTTC 1 cut(s) 1902
LmnI GCTCC 3 cut(s) 382, 673, 1114
LweI GCATC 4 cut(s) 1673, 1765, 1849, 1951
MaeI CTAG 3 cut(s) 54, 1065, 1554
MaeII ACGT 1 cut(s) 790
MaeIII GTNAC 1 cut(s) 82
MalI GATC 4 cut(s) 702, 1032, 1866, 1901
MbiI CCGCTC 1 cut(s) 718
MboI GATC 4 cut(s) 700, 1030, 1864, 1899
MflI RGATCY 1 cut(s) 1864
MhlI GDGCHC 1 cut(s) 1214
MlsI TGGCCA 1 cut(s) 23
MluCI AATT 9 cut(s) 258, 414, 770, 1265, 1745, 1765, 1788, 1853, 1919
MluNI TGGCCA 1 cut(s) 23
MlyI GAGTC 3 cut(s) 682, 1310, 1624
MmeI TCCRAC 1 cut(s) 1697
Mox20I TGGCCA 1 cut(s) 23
MroXI GAANNNNTTC 1 cut(s) 1195
MscI TGGCCA 1 cut(s) 23
MseI TTAA 4 cut(s) 276, 860, 1580, 1722
MslI CAYNNNNRTG 1 cut(s) 35
Msp20I TGGCCA 1 cut(s) 23
MspI CCGG 1 cut(s) 1592
MspR9I CCNGG 3 cut(s) 766, 928, 1904
Mva1269I GAATGC 3 cut(s) 298, 1359, 1393
MvaI CCWGG 3 cut(s) 766, 928, 1904
MwoI GCNNNNNNNGC 4 cut(s) 1115, 1170, 1532, 1931
NdeII GATC 4 cut(s) 700, 1030, 1864, 1899
NlaIII CATG 3 cut(s) 1118, 1418, 1900
NlaIV GGNNCC 4 cut(s) 231, 345, 675, 1110
NmuCI GTSAC 1 cut(s) 82
PagI TCATGA 1 cut(s) 1896
PciSI GCTCTTC 1 cut(s) 1902
PcsI WCGNNNNNNNCGW 1 cut(s) 709
PctI GAATGC 3 cut(s) 298, 1359, 1393
PdmI GAANNNNTTC 1 cut(s) 1195
PfeI GAWTC 4 cut(s) 1237, 1259, 1418, 1493
PfoI TCCNGGA 1 cut(s) 1902
PleI GAGTC 3 cut(s) 682, 1309, 1623
PpsI GAGTC 3 cut(s) 682, 1309, 1623
Psp6I CCWGG 3 cut(s) 764, 926, 1902
PspGI CCWGG 3 cut(s) 764, 926, 1902
PspN4I GGNNCC 4 cut(s) 231, 345, 675, 1110
PspPI GGNCC 1 cut(s) 263
PstNI CAGNNNCTG 1 cut(s) 1532
PsuI RGATCY 1 cut(s) 1864
RsaI GTAC 3 cut(s) 796, 1282, 1317
RsaNI GTAC 3 cut(s) 795, 1281, 1316
RseI CAYNNNNRTG 1 cut(s) 35
SapI GCTCTTC 1 cut(s) 1902
SaqAI TTAA 4 cut(s) 276, 860, 1580, 1722
Sau3AI GATC 4 cut(s) 700, 1030, 1864, 1899
Sau96I GGNCC 1 cut(s) 263
SchI GAGTC 3 cut(s) 682, 1310, 1624
ScrFI CCNGG 3 cut(s) 766, 928, 1904
SduI GDGCHC 1 cut(s) 1214
SfaNI GCATC 4 cut(s) 1673, 1765, 1849, 1951
SinI GGWCC 1 cut(s) 263
SmiMI CAYNNNNRTG 1 cut(s) 35
SmlI CTYRAG 2 cut(s) 905, 1630
SmoI CTYRAG 2 cut(s) 905, 1630
Sse9I AATT 9 cut(s) 258, 414, 770, 1265, 1745, 1765, 1788, 1853, 1919
SsiI CCGC 4 cut(s) 629, 718, 1524, 1847
SspMI CTAG 3 cut(s) 54, 1065, 1554
StyD4I CCNGG 3 cut(s) 764, 926, 1902
StyI CCWWGG 2 cut(s) 234, 1734
TaaI ACNGT 3 cut(s) 19, 1464, 1607
TaiI ACGT 1 cut(s) 793
TaqI TCGA 3 cut(s) 849, 1857, 2004
TaqII GACCGA 1 cut(s) 413
TasI AATT 9 cut(s) 258, 414, 770, 1265, 1745, 1765, 1788, 1853, 1919
TatI WGTACW 2 cut(s) 1280, 1315
TfiI GAWTC 4 cut(s) 1237, 1259, 1418, 1493
Tru1I TTAA 4 cut(s) 276, 860, 1580, 1722
Tru9I TTAA 4 cut(s) 276, 860, 1580, 1722
TscAI CASTG 3 cut(s) 37, 1612, 1831
TseFI GTSAC 1 cut(s) 82
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 9 cut(s) 171, 189, 219, 285, 399, 860, 1353, 1365, 1953
TspRI CASTG 3 cut(s) 37, 1612, 1831
VpaK11BI GGWCC 1 cut(s) 263
XapI RAATTY 2 cut(s) 770, 1788
XmnI GAANNNNTTC 1 cut(s) 1195
XspI CTAG 3 cut(s) 54, 1065, 1554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.