AT5G55840

pentatricopeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012309
Physical Location & Seq
Forward (+)
22597993 .. 22602760
4768 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G55840.2

Sequence Viewer

Length: 3411 bp
ATGTCAGGTTTATCGAGCTTAGTTTCTCATAGAAATGGAGCAATCTCTCTGTTACAACTCAGTTTTTCGAAATTCGGATGTTTCTCTCGAGTGTGGTTTTCTTCCGGCGCTGTCAAAACTTCGAAACGGGATGATTCTGCTTCTCACCAAGCATTTGGTGTCTCTGGATTTGATATGGAGAAGAGCATATACAACATTCTTACAATTGACCGTTGGGGATCTCTAAATCATATGGATTATAGGCAGGCTCGTCTTAGACTGGTTCATGGGAAGCTGGCTTTGAAGTTTCTTAAATGGGTAGTGAAGCAGCCTGGTTTGGAGACTGACCATATTGTTCAGTTGGTCTGTATTACTACACATATACTAGTTAGAGCTAGAATGTATGACCCAGCAAGACACATCTTAAAAGAGTTATCTTTGATGAGTGGTAAATCAAGCTTTGTTTTTGGTGCTTTGATGACCACGTACCGTCTTTGCAATTCAAACCCTTCTGTTTACGACATCTTGATTAGAGTGTACTTGAGGGAAGGAATGATTCAAGATTCTCTGGAAATATTTCGCTTGATGGGTCTTTATGGATTCAACCCTTCTGTATATACTTGTAATGCAATACTAGGTTCCGTTGTAAAGAGTGGTGAAGATGTGTCAGTCTGGTCTTTCTTGAAGGAAATGCTTAAGAGGAAGATTTGTCCCGATGTGGCTACCTTCAATATACTAATTAATGTGCTCTGTGCTGAAGGAAGCTTTGAAAAGTCGTCTTATCTTATGCAAAAGATGGAGAAGAGTGGTTATGCGCCAACTATAGTTACATACAATACTGTGTTACATTGGTATTGTAAAAAGGGAAGATTTAAAGCTGCTATTGAGCTTCTAGATCACATGAAGTCGAAAGGGGTCGACGCTGATGTCTGTACTTATAATATGCTTATCCATGATTTGTGCAGAAGCAATAGAATTGCCAAAGGTTATTTGTTGCTGAGGGATATGAGGAAGAGGATGATTCACCCCAACGAAGTCACGTACAATACACTTATTAACGGGTTTTCTAATGAAGGAAAGGTGCTCATTGCTAGTCAACTTTTGAACGAGATGTTAAGCTTTGGACTTTCCCCGAATCATGTTACTTTCAATGCTTTGATTGATGGACACATTAGTGAGGGAAACTTTAAAGAGGCTTTGAAGATGTTTTATATGATGGAAGCAAAAGGTCTTACACCTTCTGAAGTTAGTTATGGTGTACTTTTAGATGGGTTGTGCAAGAATGCAGAGTTTGACCTAGCAAGAGGCTTTTACATGAGAATGAAGAGAAATGGGGTATGTGTTGGGCGAATAACATACACTGGAATGATTGATGGGTTATGCAAAAATGGGTTTCTGGATGAGGCAGTTGTTCTGCTTAATGAAATGAGCAAAGATGGTATTGATCCTGATATTGTCACATACTCTGCTCTTATAAATGGATTTTGCAAGGTGGGGAGGTTTAAAACTGCGAAGGAGATAGTATGTAGAATTTACCGAGTTGGTCTTAGTCCAAATGGCATCATCTACTCAACCCTGATATACAATTGTTGTAGGATGGGATGCTTAAAGGAAGCAATAAGAATTTATGAAGCTATGATCCTTGAGGGGCATACTCGAGACCATTTCACGTTCAATGTACTTGTTACTTCACTGTGTAAAGCTGGTAAAGTGGCTGAGGCAGAAGAATTTATGCGTTGCATGACAAGTGATGGTATTCTTCCTAACACTGTTAGCTTTGATTGTCTTATCAATGGGTATGGAAACTCAGGTGAAGGGCTAAAAGCGTTCTCTGTATTTGATGAGATGACCAAAGTTGGTCATCACCCAACATTCTTCACATATGGTAGTCTCCTCAAGGGATTATGCAAAGGTGGGCATTTAAGAGAGGCAGAGAAGTTTTTGAAAAGCCTCCATGCTGTTCCTGCAGCTGTTGATACTGTAATGTACAACACACTACTCACTGCAATGTGTAAATCAGGGAACTTGGCCAAGGCTGTCTCACTTTTTGGTGAGATGGTGCAACGAAGCATTCTGCCTGACAGTTATACATATACTAGTCTTATTTCTGGATTGTGTAGGAAGGGCAAGACTGTTATTGCCATACTCTTTGCTAAGGAAGCTGAAGCTCGAGGTAATGTACTTCCGAACAAAGTGATGTATACCTGTTTTGTGGATGGTATGTTCAAGGCTGGCCAGTGGAAAGCTGGTATTTATTTTCGGGAGCAAATGGATAACCTTGGCCATACCCCTGATATTGTCACAACAAATGCAATGATAGACGGTTACTCAAGGATGGGGAAAATAGAGAAGACAAATGACCTACTTCCCGAAATGGGGAACCAAAATGGGGGTCCTAATCTGACTACCTACAATATTCTCTTGCATGGATATTCAAAGAGGAAAGATGTATCCACAAGCTTTCTGCTGTATAGATCCATCATACTGAACGGCATTTTACCTGACAAGCTCACATGCCATTCTCTTGTTCTCGGAATTTGTGAATCCAACATGTTGGAGATTGGTCTTAAAATCTTGAAAGCATTCATATGCCGAGGTGTTGAAGTTGACAGGTATACGTTCAACATGCTAATCTCCAAGTGTTGTGCAAATGGAGAAATCAACTGGGCATTTGATTTGGTTAAAGTCATGACCTCTCTCGGAATCTCGCTTGACAAAGATACTTGTGACGCCATGGTAAGTGTCCTCAACAGGAACCACAGATTCCAGGAGTCTCGCATGGTTTTGCACGAAATGTCGAAGCAAGGGATATCTCCCGAGAGTAGGAAGTACATTGGTCTGATTAACGGACTTTGTAGAGTGGGAGATATAAAGACTGCGTTTGTGGTGAAGGAAGAGATGATAGCACATAAGATATGTCCGCCTAATGTAGCTGAGAGTGCAATGGTAAGAGCGCTTGCAAAATGCGGTAAGGCTGACGAAGCCACGCTGCTTCTTCGGTTTATGCTGAAAATGAAGTTGGTTCCGACTATTGCTAGTTTCACTACTCTAATGCACTTGTGTTGCAAGAACGGTAATGTTATAGAGGCCCTGGAATTGAGAGTCGTCATGAGCAATTGTGGGCTGAAGCTTGATCTTGTGTCATACAATGTTTTGATTACTGGACTTTGCGCCAAAGGTGATATGGCACTTGCATTTGAACTCTATGAAGAGATGAAAGGAGATGGATTTTTAGCCAATGCGACTACATACAAAGCTCTCATCAGGGGGTTACTTGCCCGGGAAACAGCATTCTCCGGGGCTGATATTATCTTGAAAGATTTACTTGCAAGAGGATTCATAACATCTATGAGCTTGTCACAAGATTCACACAGAAACTTGAAAATGGCCATGGAGAAGCTGAAGGCCTTGCAAAGTAACAAGAAGGATTAA

Protein Analysis

1136

Amino Acids

126.66

Weight (kDa)

8.96

Isoelectric Point (pI)

27.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 185 - 243 5.4e-07 Pentatricopeptide repeat domain
PPR_long PF17177 192 - 349 1.4e-12 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 196 - 244 8.2e-11 PPR repeat family
PPR_1 PF12854 229 - 260 2.5e-06 PPR repeat
PPR_2 PF13041 231 - 273 1.5e-09 PPR repeat family
PPR_3 PF13812 255 - 310 1e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 263 - 295 1.2e-09 PPR repeat
PPR_2 PF13041 266 - 315 8.6e-19 PPR repeat family
PPR PF01535 269 - 299 4.5e-08 PPR repeat
PPR_long PF17177 286 - 416 4.1e-09 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 297 - 330 3e-07 PPR repeat
PPR_2 PF13041 302 - 349 3.4e-14 PPR repeat family
PPR_3 PF13812 325 - 380 6e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 333 - 364 1e-09 PPR repeat
PPR_2 PF13041 336 - 382 1.4e-14 PPR repeat family
PPR PF01535 339 - 369 4.4e-06 PPR repeat
PPR_1 PF12854 368 - 400 5.4e-07 PPR repeat
PPR_2 PF13041 371 - 420 2.4e-14 PPR repeat family
PPR PF01535 374 - 404 1.1e-06 PPR repeat
PPR_2 PF13041 409 - 455 4.3e-10 PPR repeat family
PPR_3 PF13812 434 - 486 1.6e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 438 - 470 3.5e-10 PPR repeat
PPR_2 PF13041 444 - 490 1.7e-16 PPR repeat family
PPR PF01535 444 - 474 1.3e-08 PPR repeat
PPR_3 PF13812 465 - 523 4.9e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 472 - 501 2.1e-09 PPR repeat
PPR_2 PF13041 511 - 560 1.8e-08 PPR repeat family
PPR_long PF17177 519 - 673 4.3e-10 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 543 - 574 8.5e-09 PPR repeat
PPR_2 PF13041 547 - 594 1.3e-09 PPR repeat family
TPR_24 PF23276 552 - 678 2.7e-10 Fungal tetratrico peptide repeats
PPR_3 PF13812 574 - 626 5.7e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 577 - 610 4.8e-06 PPR repeat
PPR_2 PF13041 581 - 630 6e-14 PPR repeat family
PPR_1 PF12854 613 - 642 2.6e-07 PPR repeat
PPR_1 PF12854 652 - 680 1e-07 PPR repeat
PPR_2 PF13041 652 - 700 9.2e-19 PPR repeat family
PPR PF01535 654 - 683 5.6e-07 PPR repeat
PPR_1 PF12854 683 - 705 7.3e-07 PPR repeat
PPR_2 PF13041 722 - 768 5e-07 PPR repeat family
PPR_2 PF13041 757 - 806 8.4e-12 PPR repeat family
PPR_2 PF13041 792 - 840 4.3e-06 PPR repeat family
PPR_long PF17177 848 - 987 7.3e-12 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 858 - 890 4.1e-07 PPR repeat
PPR_2 PF13041 1002 - 1050 1.7e-10 PPR repeat family
PPR_3 PF13812 1030 - 1081 7.4e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 1034 - 1066 7.9e-09 PPR repeat
PPR_2 PF13041 1038 - 1084 6.4e-14 PPR repeat family
PPR PF01535 1040 - 1070 2.5e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012309)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55840 AT5G55840 AT5G55840
fragaria_vesca FvH4_3g42930
malus_domestica MD03G1028500.v1.1
prunus_persica Prupe.6G024500_v2.0.a1 Prupe.6G024500_v2.0.a1
pyrus_communis pycom03g02310
rosa_chinensis RchiOBHm_Chr5g0076971
rosa_laevigata RLG00000036637
rosa_multiflora Rmu_sc0004655.1_g000020
rosa_roxburghii Rroxscaffold_1G00005180
rosa_rugosa Rorug05G0449800 Rorug05G0449900
rosa_samantha Rh5AG504500 Rh5BG526200 Rh5CG550100 Rh5DG538400
rosa_wichuraiana Rw5G047180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 918, 1454
AasI GACNNNNNNGTC 1 cut(s) 905
AccI GTMKAC 3 cut(s) 897, 2180, 2594
AciI CCGC 2 cut(s) 2900, 2946
AclWI GGATC 4 cut(s) 226, 1418, 1612, 2448
AcoI YGGCCR 4 cut(s) 2007, 2212, 2260, 3366
AcsI RAATTY 5 cut(s) 71, 1509, 1602, 1706, 2514
AcuI CTGAAG 5 cut(s) 756, 1242, 2163, 3125, 3401
AcyI GRCGYC 1 cut(s) 2709
AfaI GTAC 9 cut(s) 467, 518, 913, 1022, 1239, 1659, 1967, 2160, 2810
AfeI AGCGCT 1 cut(s) 2934
AfiI CCNNNNNNNGG 4 cut(s) 2354, 2355, 2368, 2802
AflII CTTAAG 1 cut(s) 674
AflIII ACRYGT 1 cut(s) 2529
AhlI ACTAGT 2 cut(s) 364, 2075
AjnI CCWGG 3 cut(s) 310, 2745, 3069
AjuI GAANNNNNNNTTGG 2 cut(s) 2981, 3013
AleI CACNNNNGTG 1 cut(s) 1152
AloI GAACNNNNNNTCC 2 cut(s) 2186, 2218
Alw21I GWGCWC 2 cut(s) 729, 1065
Alw26I GTCTC 6 cut(s) 166, 314, 1632, 1874, 2023, 2757
AlwI GGATC 4 cut(s) 226, 1418, 1612, 2448
Ama87I CYCGRG 5 cut(s) 87, 1635, 2148, 2795, 3258
Aor51HI AGCGCT 1 cut(s) 2934
AoxI GGCC 6 cut(s) 2007, 2212, 2260, 3066, 3366, 3384
ApeKI GCWGC 4 cut(s) 307, 857, 1946, 2968
ApoI RAATTY 5 cut(s) 71, 1509, 1602, 1706, 2514
ArsI GACNNNNNNTTYG 2 cut(s) 2356, 2388
AseI ATTAAT 1 cut(s) 720
Asp700I GAANNNNTTC 2 cut(s) 555, 2561
AspLEI GCGC 4 cut(s) 110, 796, 2935, 3152
AspS9I GGNCC 2 cut(s) 2372, 3067
AsuC2I CCSGG 3 cut(s) 3259, 3260, 3277
AsuHPI GGTGA 8 cut(s) 137, 647, 995, 1802, 1835, 2042, 2878, 3170
AsuII TTCGAA 2 cut(s) 68, 122
AvaI CYCGRG 5 cut(s) 87, 1635, 2148, 2795, 3258
AvaII GGWCC 1 cut(s) 2372
BalI TGGCCA 4 cut(s) 2009, 2214, 2262, 3368
BarI GAAGNNNNNNTAC 2 cut(s) 173, 205
BbsI GAAGAC 1 cut(s) 2336
Bbv12I GWGCWC 2 cut(s) 729, 1065
BbvCI CCTCAGC 2 cut(s) 977, 1695
BbvI GCAGC 4 cut(s) 319, 844, 1958, 2955
BceAI ACGGC 1 cut(s) 2485
BciT130I CCWGG 3 cut(s) 312, 2747, 3071
BciVI GTATCC 1 cut(s) 2440
BcnI CCSGG 3 cut(s) 3259, 3260, 3277
BcoDI GTCTC 6 cut(s) 166, 314, 1632, 1874, 2023, 2757
BcuI ACTAGT 2 cut(s) 364, 2075
BfaI CTAG 8 cut(s) 365, 375, 614, 872, 1071, 1277, 2076, 3015
BfmI CTRYAG 2 cut(s) 801, 1944
BfoI RGCGCY 2 cut(s) 111, 2936
BfrI CTTAAG 1 cut(s) 674
BfuI GTATCC 1 cut(s) 2440
BisI GCNGC 4 cut(s) 308, 858, 1947, 2969
BlsI GCNGC 4 cut(s) 309, 859, 1948, 2970
Bme1390I CCNGG 6 cut(s) 312, 2747, 3071, 3259, 3260, 3277
Bme18I GGWCC 1 cut(s) 2372
BmeT110I CYCGRG 5 cut(s) 87, 1635, 2148, 2795, 3258
BmgT120I GGNCC 2 cut(s) 2372, 3067
BmiI GGNNCC 5 cut(s) 619, 2360, 2373, 2735, 3003
BmrFI CCNGG 6 cut(s) 312, 2747, 3071, 3259, 3260, 3277
BmrI ACTGGG 1 cut(s) 2653
BmsI GCATC 2 cut(s) 1548, 1571
BmuI ACTGGG 1 cut(s) 2653
BpiI GAAGAC 1 cut(s) 2336
Bpu10I CCTNAGC 3 cut(s) 977, 1695, 2133
Bpu14I TTCGAA 2 cut(s) 68, 122
BpuEI CTTGAG 4 cut(s) 541, 1643, 1859, 2293
BpuMI CCSGG 3 cut(s) 3259, 3260, 3277
BsaAI YACGTR 2 cut(s) 465, 1020
BsaHI GRCGYC 1 cut(s) 2709
BsaI GGTCTC 1 cut(s) 1632
BsaJI CCNNGG 8 cut(s) 2010, 2257, 2572, 2712, 3069, 3258, 3276, 3369
Bsc4I CCNNNNNNNGG 4 cut(s) 2354, 2355, 2368, 2802
Bse1I ACTGG 5 cut(s) 264, 1345, 2215, 2648, 3145
Bse3DI GCAATG 4 cut(s) 1065, 1992, 2298, 2928
BseBI CCWGG 3 cut(s) 312, 2747, 3071
BseDI CCNNGG 8 cut(s) 2010, 2257, 2572, 2712, 3069, 3258, 3276, 3369
BseGI GGATG 8 cut(s) 83, 136, 1002, 1384, 1581, 1586, 2200, 2319
BseLI CCNNNNNNNGG 4 cut(s) 2354, 2355, 2368, 2802
BseMI GCAATG 4 cut(s) 1065, 1992, 2298, 2928
BseMII CTCAG 5 cut(s) 73, 968, 1686, 1800, 2904
BseNI ACTGG 5 cut(s) 264, 1345, 2215, 2648, 3145
BseRI GAGGAG 1 cut(s) 1862
BseXI GCAGC 4 cut(s) 319, 844, 1958, 2955
BseYI CCCAGC 1 cut(s) 388
BsgI GTGCAG 1 cut(s) 961
BshFI GGCC 6 cut(s) 2009, 2214, 2262, 3068, 3368, 3386
BsiHKAI GWGCWC 2 cut(s) 729, 1065
BsiHKCI CYCGRG 5 cut(s) 87, 1635, 2148, 2795, 3258
BsiSI CCGG 3 cut(s) 105, 3259, 3276
BslFI GGGAC 1 cut(s) 675
BslI CCNNNNNNNGG 4 cut(s) 2354, 2355, 2368, 2802
BsmAI GTCTC 6 cut(s) 166, 314, 1632, 1874, 2023, 2757
BsmFI GGGAC 1 cut(s) 675
BsmI GAATGC 4 cut(s) 1267, 2049, 2561, 3269
BsnI GGCC 6 cut(s) 2009, 2214, 2262, 3068, 3368, 3386
Bso31I GGTCTC 1 cut(s) 1632
BsoBI CYCGRG 5 cut(s) 87, 1635, 2148, 2795, 3258
Bsp119I TTCGAA 2 cut(s) 68, 122
Bsp1286I GDGCHC 2 cut(s) 729, 1065
Bsp1407I TGTACA 1 cut(s) 1965
Bsp143I GATC 6 cut(s) 218, 874, 1423, 1617, 2453, 3112
Bsp19I CCATGG 2 cut(s) 2712, 3369
BspACI CCGC 2 cut(s) 2900, 2946
BspANI GGCC 6 cut(s) 2009, 2214, 2262, 3068, 3368, 3386
BspCNI CTCAG 5 cut(s) 72, 969, 1687, 1799, 2905
BspHI TCATGA 2 cut(s) 2667, 3087
BspLI GGNNCC 5 cut(s) 619, 2360, 2373, 2735, 3003
BspMAI CTGCAG 1 cut(s) 1948
BspPI GGATC 4 cut(s) 226, 1418, 1612, 2448
BspQI GCTCTTC 1 cut(s) 176
BspT104I TTCGAA 2 cut(s) 68, 122
BspTI CTTAAG 1 cut(s) 674
BspTNI GGTCTC 1 cut(s) 1632
BsrDI GCAATG 4 cut(s) 1065, 1992, 2298, 2928
BsrGI TGTACA 1 cut(s) 1965
BsrI ACTGG 5 cut(s) 264, 1345, 2215, 2648, 3145
BssECI CCNNGG 8 cut(s) 2010, 2257, 2572, 2712, 3069, 3258, 3276, 3369
BssMI GATC 6 cut(s) 218, 874, 1423, 1617, 2453, 3112
BssNAI GTATAC 2 cut(s) 2181, 2595
BssNI GRCGYC 1 cut(s) 2709
BssT1I CCWWGG 4 cut(s) 2010, 2257, 2712, 3369
Bst1107I GTATAC 2 cut(s) 2181, 2595
Bst2UI CCWGG 3 cut(s) 312, 2747, 3071
Bst6I CTCTTC 6 cut(s) 176, 776, 986, 1298, 2868, 3183
BstACI GRCGYC 1 cut(s) 2709
BstAFI CTTAAG 1 cut(s) 674
BstAUI TGTACA 1 cut(s) 1965
BstBAI YACGTR 2 cut(s) 465, 1020
BstBI TTCGAA 2 cut(s) 68, 122
BstC8I GCNNGC 4 cut(s) 246, 276, 2212, 2937
BstDEI CTNAG 9 cut(s) 19, 59, 254, 977, 1526, 1695, 1786, 2133, 2913
BstDSI CCRYGG 2 cut(s) 2712, 3369
BstF5I GGATG 8 cut(s) 83, 136, 1002, 1384, 1581, 1586, 2200, 2319
BstH2I RGCGCY 2 cut(s) 111, 2936
BstHHI GCGC 4 cut(s) 110, 796, 2935, 3152
BstKTI GATC 6 cut(s) 221, 877, 1426, 1620, 2456, 3115
BstMAI GTCTC 6 cut(s) 166, 314, 1632, 1874, 2023, 2757
BstMBI GATC 6 cut(s) 218, 874, 1423, 1617, 2453, 3112
BstMWI GCNNNNNNNGC 4 cut(s) 1943, 2138, 2918, 2960
BstNI CCWGG 3 cut(s) 312, 2747, 3071
BstNSI RCATGY 3 cut(s) 2496, 2533, 2608
BstSCI CCNGG 6 cut(s) 310, 2745, 3069, 3257, 3258, 3275
BstSFI CTRYAG 2 cut(s) 801, 1944
BstV1I GCAGC 4 cut(s) 319, 844, 1958, 2955
BstV2I GAAGAC 1 cut(s) 2336
BstX2I RGATCY 2 cut(s) 218, 2453
BstXI CCANNNNNNTGG 2 cut(s) 155, 2533
BstYI RGATCY 2 cut(s) 218, 2453
BstZ17I GTATAC 2 cut(s) 2181, 2595
BsuI GTATCC 1 cut(s) 2440
BsuRI GGCC 6 cut(s) 2009, 2214, 2262, 3068, 3368, 3386
BtgI CCRYGG 2 cut(s) 2712, 3369
BtsCI GGATG 8 cut(s) 83, 136, 1002, 1384, 1581, 1586, 2200, 2319
BtsI GCAGTG 1 cut(s) 1980
BtsIMutI CAGTG 5 cut(s) 1338, 1670, 1746, 1980, 2222
Cac8I GCNNGC 4 cut(s) 246, 276, 2212, 2937
CciI TCATGA 2 cut(s) 2667, 3087
CfoI GCGC 4 cut(s) 110, 796, 2935, 3152
Cfr13I GGNCC 2 cut(s) 2372, 3067
Cfr9I CCCGGG 1 cut(s) 3258
CseI GACGC 2 cut(s) 908, 2717
Csp6I GTAC 9 cut(s) 466, 517, 912, 1021, 1238, 1658, 1966, 2159, 2809
CviQI GTAC 9 cut(s) 466, 517, 912, 1021, 1238, 1658, 1966, 2159, 2809
DdeI CTNAG 9 cut(s) 19, 59, 254, 977, 1526, 1695, 1786, 2133, 2913
DpnI GATC 6 cut(s) 220, 876, 1425, 1619, 2455, 3114
DpnII GATC 6 cut(s) 218, 874, 1423, 1617, 2453, 3112
DraI TTTAAA 3 cut(s) 853, 1168, 1483
DrdI GACNNNNNNGTC 1 cut(s) 905
DseDI GACNNNNNNGTC 1 cut(s) 905
EaeI YGGCCR 4 cut(s) 2007, 2212, 2260, 3366
Eam1104I CTCTTC 6 cut(s) 176, 776, 986, 1298, 2868, 3183
EarI CTCTTC 6 cut(s) 176, 776, 986, 1298, 2868, 3183
EciI GGCGGA 1 cut(s) 2889
Eco130I CCWWGG 4 cut(s) 2010, 2257, 2712, 3369
Eco147I AGGCCT 1 cut(s) 3386
Eco31I GGTCTC 1 cut(s) 1632
Eco32I GATATC 1 cut(s) 2790
Eco47I GGWCC 1 cut(s) 2372
Eco47III AGCGCT 1 cut(s) 2934
Eco57I CTGAAG 5 cut(s) 756, 1242, 2163, 3125, 3401
Eco88I CYCGRG 5 cut(s) 87, 1635, 2148, 2795, 3258
EcoO109I RGGNCCY 2 cut(s) 2372, 3067
EcoRII CCWGG 3 cut(s) 310, 2745, 3069
EcoRV GATATC 1 cut(s) 2790
EcoT14I CCWWGG 4 cut(s) 2010, 2257, 2712, 3369
ErhI CCWWGG 4 cut(s) 2010, 2257, 2712, 3369
FalI AAGNNNNNCTT 2 cut(s) 3288, 3320
FaqI GGGAC 1 cut(s) 675
FauNDI CATATG 3 cut(s) 231, 1861, 2567
FblI GTMKAC 3 cut(s) 897, 2180, 2594
Fnu4HI GCNGC 4 cut(s) 308, 858, 1947, 2969
FokI GGATG 8 cut(s) 90, 143, 1009, 1391, 1588, 1593, 2207, 2326
Fsp4HI GCNGC 4 cut(s) 308, 858, 1947, 2969
FspBI CTAG 8 cut(s) 365, 375, 614, 872, 1071, 1277, 2076, 3015
GlaI GCGC 4 cut(s) 109, 795, 2934, 3151
GluI GCNGC 4 cut(s) 308, 858, 1947, 2969
GsaI CCCAGC 1 cut(s) 392
HaeII RGCGCY 2 cut(s) 111, 2936
HaeIII GGCC 6 cut(s) 2009, 2214, 2262, 3068, 3368, 3386
HapII CCGG 3 cut(s) 105, 3259, 3276
HgaI GACGC 2 cut(s) 908, 2717
HhaI GCGC 4 cut(s) 110, 796, 2935, 3152
Hin1I GRCGYC 1 cut(s) 2709
Hin6I GCGC 4 cut(s) 108, 794, 2933, 3150
HinP1I GCGC 4 cut(s) 108, 794, 2933, 3150
HincII GTYRAC 3 cut(s) 898, 1076, 2587
HindII GTYRAC 3 cut(s) 898, 1076, 2587
HindIII AAGCTT 5 cut(s) 436, 742, 1096, 2437, 3107
HpaII CCGG 3 cut(s) 105, 3259, 3276
HphI GGTGA 8 cut(s) 137, 647, 995, 1802, 1835, 2042, 2878, 3170
Hpy166II GTNNAC 8 cut(s) 496, 517, 898, 1076, 1238, 2181, 2587, 2595
Hpy188I TCNGA 8 cut(s) 77, 1222, 2166, 2382, 2513, 2681, 2820, 3006
Hpy8I GTNNAC 8 cut(s) 496, 517, 898, 1076, 1238, 2181, 2587, 2595
Hpy99I CGWCG 1 cut(s) 902
HpyCH4IV ACGT 4 cut(s) 464, 1019, 1649, 2597
HpyF10VI GCNNNNNNNGC 4 cut(s) 1943, 2138, 2918, 2960
HpyF3I CTNAG 9 cut(s) 19, 59, 254, 977, 1526, 1695, 1786, 2133, 2913
HpySE526I ACGT 4 cut(s) 464, 1019, 1649, 2597
Hsp92I GRCGYC 1 cut(s) 2709
HspAI GCGC 4 cut(s) 108, 794, 2933, 3150
Kzo9I GATC 6 cut(s) 218, 874, 1423, 1617, 2453, 3112
LguI GCTCTTC 1 cut(s) 176
LmnI GCTCC 2 cut(s) 38, 2242
Lsp1109I GCAGC 4 cut(s) 319, 844, 1958, 2955
LweI GCATC 2 cut(s) 1548, 1571
MaeI CTAG 8 cut(s) 365, 375, 614, 872, 1071, 1277, 2076, 3015
MaeII ACGT 4 cut(s) 464, 1019, 1649, 2597
MalI GATC 6 cut(s) 220, 876, 1425, 1619, 2455, 3114
MboI GATC 6 cut(s) 218, 874, 1423, 1617, 2453, 3112
MfeI CAATTG 3 cut(s) 204, 1564, 3094
MflI RGATCY 2 cut(s) 218, 2453
MhlI GDGCHC 2 cut(s) 729, 1065
MlsI TGGCCA 4 cut(s) 2009, 2214, 2262, 3368
MluNI TGGCCA 4 cut(s) 2009, 2214, 2262, 3368
MlyI GAGTC 2 cut(s) 2759, 3090
MmeI TCCRAC 3 cut(s) 2514, 2550, 3029
Mox20I TGGCCA 4 cut(s) 2009, 2214, 2262, 3368
MroXI GAANNNNTTC 2 cut(s) 555, 2561
MscI TGGCCA 4 cut(s) 2009, 2214, 2262, 3368
MslI CAYNNNNRTG 6 cut(s) 33, 1152, 1298, 1343, 1985, 2566
Msp20I TGGCCA 4 cut(s) 2009, 2214, 2262, 3368
MspA1I CMGCKG 1 cut(s) 1949
MspCI CTTAAG 1 cut(s) 674
MspI CCGG 3 cut(s) 105, 3259, 3276
MspR9I CCNGG 6 cut(s) 312, 2747, 3071, 3259, 3260, 3277
MunI CAATTG 3 cut(s) 204, 1564, 3094
Mva1269I GAATGC 4 cut(s) 1267, 2049, 2561, 3269
MvaI CCWGG 3 cut(s) 312, 2747, 3071
MwoI GCNNNNNNNGC 4 cut(s) 1943, 2138, 2918, 2960
NciI CCSGG 3 cut(s) 3259, 3260, 3277
NcoI CCATGG 2 cut(s) 2712, 3369
NdeI CATATG 3 cut(s) 231, 1861, 2567
NdeII GATC 6 cut(s) 218, 874, 1423, 1617, 2453, 3112
NlaIV GGNNCC 5 cut(s) 619, 2360, 2373, 2735, 3003
NmeAIII GCCGAG 1 cut(s) 2597
NmuCI GTSAC 5 cut(s) 1015, 1435, 2278, 2705, 3336
NspI RCATGY 3 cut(s) 2496, 2533, 2608
NspV TTCGAA 2 cut(s) 68, 122
OliI CACNNNNGTG 1 cut(s) 1152
PaeR7I CTCGAG 3 cut(s) 87, 1635, 2148
PagI TCATGA 2 cut(s) 2667, 3087
PceI AGGCCT 1 cut(s) 3386
PciI ACATGT 1 cut(s) 2529
PciSI GCTCTTC 1 cut(s) 176
PctI GAATGC 4 cut(s) 1267, 2049, 2561, 3269
PdmI GAANNNNTTC 2 cut(s) 555, 2561
PfoI TCCNGGA 1 cut(s) 2745
PkrI GCNGC 4 cut(s) 309, 859, 1948, 2970
PleI GAGTC 2 cut(s) 2758, 3089
PpsI GAGTC 2 cut(s) 2758, 3089
Ppu21I YACGTR 2 cut(s) 465, 1020
PpuMI RGGWCCY 1 cut(s) 2372
PscI ACATGT 1 cut(s) 2529
PshBI ATTAAT 1 cut(s) 720
PsiI TTATAA 2 cut(s) 918, 1454
Psp5II RGGWCCY 1 cut(s) 2372
Psp6I CCWGG 3 cut(s) 310, 2745, 3069
PspFI CCCAGC 1 cut(s) 388
PspGI CCWGG 3 cut(s) 310, 2745, 3069
PspN4I GGNNCC 5 cut(s) 619, 2360, 2373, 2735, 3003
PspPI GGNCC 2 cut(s) 2372, 3067
PspPPI RGGWCCY 1 cut(s) 2372
PspXI VCTCGAGB 1 cut(s) 2148
PstI CTGCAG 1 cut(s) 1948
PsuI RGATCY 2 cut(s) 218, 2453
PvuII CAGCTG 1 cut(s) 1949
RsaI GTAC 9 cut(s) 467, 518, 913, 1022, 1239, 1659, 1967, 2160, 2810
RsaNI GTAC 9 cut(s) 466, 517, 912, 1021, 1238, 1658, 1966, 2159, 2809
RseI CAYNNNNRTG 6 cut(s) 33, 1152, 1298, 1343, 1985, 2566
SalI GTCGAC 1 cut(s) 896
SapI GCTCTTC 1 cut(s) 176
SatI GCNGC 4 cut(s) 308, 858, 1947, 2969
Sau3AI GATC 6 cut(s) 218, 874, 1423, 1617, 2453, 3112
Sau96I GGNCC 2 cut(s) 2372, 3067
SchI GAGTC 2 cut(s) 2759, 3090
ScrFI CCNGG 6 cut(s) 312, 2747, 3071, 3259, 3260, 3277
SduI GDGCHC 2 cut(s) 729, 1065
SfaNI GCATC 2 cut(s) 1548, 1571
SfcI CTRYAG 2 cut(s) 801, 1944
Sfr274I CTCGAG 3 cut(s) 87, 1635, 2148
SfuI TTCGAA 2 cut(s) 68, 122
SinI GGWCC 1 cut(s) 2372
SlaI CTCGAG 3 cut(s) 87, 1635, 2148
SmaI CCCGGG 1 cut(s) 3260
SmiMI CAYNNNNRTG 6 cut(s) 33, 1152, 1298, 1343, 1985, 2566
SmlI CTYRAG 8 cut(s) 87, 520, 674, 1622, 1635, 1874, 2148, 2308
SmoI CTYRAG 8 cut(s) 87, 520, 674, 1622, 1635, 1874, 2148, 2308
SpeI ACTAGT 2 cut(s) 364, 2075
SseBI AGGCCT 1 cut(s) 3386
SsiI CCGC 2 cut(s) 2900, 2946
SspI AATATT 2 cut(s) 555, 2395
SspMI CTAG 8 cut(s) 365, 375, 614, 872, 1071, 1277, 2076, 3015
StuI AGGCCT 1 cut(s) 3386
StyD4I CCNGG 6 cut(s) 310, 2745, 3069, 3257, 3258, 3275
StyI CCWWGG 4 cut(s) 2010, 2257, 2712, 3369
TaiI ACGT 4 cut(s) 467, 1022, 1652, 2600
TaqI TCGA 9 cut(s) 14, 68, 88, 122, 887, 897, 1636, 2149, 2777
TatI WGTACW 7 cut(s) 516, 911, 1237, 1657, 1965, 2158, 2808
TscAI CASTG 5 cut(s) 1345, 1677, 1753, 1987, 2222
TseFI GTSAC 5 cut(s) 1015, 1435, 2278, 2705, 3336
TseI GCWGC 4 cut(s) 307, 857, 1946, 2968
Tsp45I GTSAC 5 cut(s) 1015, 1435, 2278, 2705, 3336
TspGWI ACGGA 2 cut(s) 610, 2841
TspMI CCCGGG 1 cut(s) 3258
TspRI CASTG 5 cut(s) 1345, 1677, 1753, 1987, 2222
Vha464I CTTAAG 1 cut(s) 674
VpaK11BI GGWCC 1 cut(s) 2372
VspI ATTAAT 1 cut(s) 720
XapI RAATTY 5 cut(s) 71, 1509, 1602, 1706, 2514
XbaI TCTAGA 1 cut(s) 871
XceI RCATGY 3 cut(s) 2496, 2533, 2608
XcmI CCANNNNNNNNNTGG 2 cut(s) 2222, 3160
XhoI CTCGAG 3 cut(s) 87, 1635, 2148
XmaI CCCGGG 1 cut(s) 3258
XmiI GTMKAC 3 cut(s) 897, 2180, 2594
XmnI GAANNNNTTC 2 cut(s) 555, 2561
XspI CTAG 8 cut(s) 365, 375, 614, 872, 1071, 1277, 2076, 3015
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.