Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0012309

Physical Location & Seq

Genomic Coordinates Reverse (-)

85411025 .. 85416249

Gene Structure 5225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG504500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3399 bp

ATGTTGCTTTCCAAGACTAAACAACTCTCCCAAATTTCCCACACAATTTCAAAGCTCAGAGCTTTTCATGGTGGTTCCTCTCCAAATGTCAAAAGCAATCTCAAAGAAAATGGCTTCAGAAACAGAGCTCATAGAACCACCCAAACCTCAGGTTCAGATATGGAGAAAAGCATATACTCAATTCTCACTATAGACCGATGGGAGTCACTGAACCACATGGAGTATAAGTTGGCTTCTCTTAGACAAGTGCATGGAAGATTGGCCTTGAAATTCTTCAACTGGGTCATTGAACAGCCTGGTTTGGAACTCAATCATCTCACTCATATACTCTCTGTTACAACTCATATACTTGCTAGAGCTAGAATGTATGACTCTGCCAGGTTAATTTTGGAGCATTTAGCACAATTGGGTGCTGACTCGAAATCTGTTTTTGGTGCTTTGATGGATACTTACCCTCTTTGCAATTCAAACCCTTCAGTATTTGACCTTTTGATTAGAGTTTACTTGAGGGAAGGGATGGTTGGTAATGCTGTAGAAACTTTTTATTTGATGGGTTTAAGGGGGTTTAGGCCGTCGGGGTATACTTGTAATATGATTCTAGCTTCGTTGGCAAAGAACCAGAGGGTTGCATCGGTGTGGTCTTTTTTCAAAGAAATGCTGGCTAATAATGTTTGCCCTGATGTTAGTACTTTTAATATATTGATTAGTGTTTTGTGTGTGGAAGGGAAGCTTAGTAAAGCTAGTTATCTTTTGAGGAAGATGGAAAAGAGTGGTTATGTTCCTAATGTAGTTACTTATAATACTTTGCTCAATTGGTACTGCAAAAAGGGGAGATATAAAGCAGCTTTTGAGCTTATTGATCATATGGGTTCTAAGGGTATTGAAGCAGATGTATGTACATATAACATGCTTATTGAGGATTTGTGTAGAAACAGTAGTAGTGCGAAAGGTTATTTGCTGTTGAAGAAGATGAGAAGGAAGAAGTTATCTCCTAATCAGGTTACCTACAATATCCTTATTAATGGGTTTGTCAAGGAGGGGAAAATTGGTGTGGCCACCAAGGTTTTTGATGAAATGTCAATGTTTAATCTTTCACCAAATTGTGTTACTTATAATGCTCTGATTGACGGGCTCTGTCAAAAGGGTAAGCTTGAAGAAGCTCTCAGACTCTTGGACATGATGGAAGCTGTGGGACTAAAACCTAATGAAGTCAGCTACGGTGCTGTTTTAAATGGGTTGTGCAAGCATGGTAAGTTTGATTTAGCAAGAAGTACTTTTCAGAGAATGCGATTGAATGGGATTGTTAGTGGTTGCATTATGTATACATCAATCATGGATGGGTTATGCAAAAATGGGTTGCTTGATGAATCTGTGCATTTGCTTAATATGATGGTCCAGGATGGTGTGAATCCTGATATAGTAGCATTTTCAGTGCTCATAACTGGATTCTGCAAAGCTGGGAGGATGAAACATGTAAGAGAAATAATGTGTAAACTGTATAGAGCTGGCCTTGCACCGAATAAAATTATATATTCTACCTTAATCTACTACTCTTCCAAGATGGGCAACATAATCGAAGCTTTAAAGATCTATGTAGTTATGAATCATAATGGCCACACTGCTGACCTTTTCACATGTAACATATTGGTTACTGCACTTTGTGAAGCCGGGAACCTTGGTGCTGCAGAGGATTTCATGCAGCATATGAGCAGCATGGGTTTGGTTGCCAATTCCATTTCTTTTGATTGTATGATAAATGGGTATGGAAACATGGGCGATGCCTTAGGAGCGTTTTCTATGTTTGATGAAATGATTAGATTAGGTCATCACCCTAGTCCATTTACTTATGGAAGTATACTGAAAGGGCTGTGCAGGGGTGGTCATTTGGAGGTGGCAAGGAAATTTTTGAAGAAACTCCACAGCATTCCATCGGCTGTTGATGCTGTTGTGTACAATACAATACTTTCTGAGACATGCAATTCTGGGAATTTGCAAGAGTCTGTTGTCCTTCTTGATGAGATGGTTGAGAATAATGTCCTGCCCGATACTCATACGTACAGTAGCCTTCTTGCTGGGTTATGCAGGAACGGAAAAGTGGTTGCTGCCATCCTATTGTTTGGGAGAGTTATGGAAAAAGGAATTTTGTCACCAAATCCCATAATGTACACCTGTCTAGTTGATGGCCTTTTCAAGATTGGGCAACCTAAGGCTGCTTCATATCTATTTGAAGAGATGGAGAACAAAGGTCTGTACTCAGATACTATTGCTCTTAATGTAATGATGGATGGATACTCAAGGATGGGGAATATGATGAAGGCAAATGATCTCTTTTCAACTATGGGGGGCCGAAGATTGTCCCCCAATTTGGCTTCATGTAACATTCTGTTGCATGGATACTCAAAGAAACAAGACTTATTGGCATGCTCTATGGTGTATAAAAACATGATCAGGGTCAAATTATTGCCTGACAAATTGACATGTCACTCTCTTATTCTTGGATTATGTGAGTCAGGTAAGGTGGATATTGGCCACAAAATGTTGCATAAGATGATTATGGAAGGTGCTGTACCTGATCTTTTAACATTCAATTTGCTTATTAGCAAGTATTCTGAGATTGGGAAGATAGGGATGGCATTTGAGCTAGTGAGTGTCATGAATCTGTTAGGAGTTTCCGCTAATACAGACACTCATGGAGCAATCTTAAATGGACTGTTCAGAATTTCAGCTTTCCGCGCATCCCGTAGTCTTCTGTATGAGATGTTGGCCAAAGGATTTACTCCCAAGTATACACATTATTTCACTATAATTAATGGTATGTGTAGAGTGGGAGATATACAAGGAGCATTTGAGCTAAAAGATCAGATGGAAGCTCTTGGTGTCACTTCCTGTGACATTGCTGAGAGTGCTATGGTTAGAGGGCTTGCAAAATGTGGGAAGGTTGAAGAAGCGATGCTGGTTCTTGATCGCATGCTTCGAATGCAACTTGTTCCAACTACTGCTACTTTTACTACTTTGATGCACAAGTTCTGCAAAGAAGCCAACCTTGCAGAGGCTCTAAGATTGAGGGGTGTAATGGAACATTGTGGTGTGCCACTCGATGTTGCTGCTTTTAATGTTCTCATTTCAGGCTTTTGTGCTAATGGTGATGTTGTGGCTGCATTTGAGCTGTACAAGGAGATGAAACGAAGTGGTCTCTTGCCCAACACAACAACGTACACTCTTCTCCTTGCTGCTGTTTCCTCTGGTAATAATCATATTGAAGGTGAAGAGATTTTGGGAGATTTATTGGGAAAGGGGTTGATATCTGGAAATTTGGATGGAAGCACCTTAACACTGCATGACCAATTGAATTTTGCAATGGGAACATTAAACTCTTGGAGGTGCAATAAATGGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

1132

Amino Acids

125.23

Weight (kDa)

8.8

Isoelectric Point (pI)

30.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	195 - 239	1.9e-10	PPR repeat family
PPR_long	PF17177	204 - 339	3.3e-11	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	216 - 274	3e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	223 - 255	1.9e-09	PPR repeat
PPR_2	PF13041	226 - 271	6.2e-13	PPR repeat family
PPR_3	PF13812	250 - 306	3.1e-11	Pentatricopeptide repeat domain
TPR_24	PF23276	251 - 358	4.1e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	258 - 289	2.4e-11	PPR repeat
PPR_2	PF13041	261 - 310	7.7e-19	PPR repeat family
PPR	PF01535	264 - 294	1.9e-07	PPR repeat
PPR_3	PF13812	285 - 345	5.5e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	297 - 345	1.1e-12	PPR repeat family
PPR_long	PF17177	312 - 418	3.9e-09	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	328 - 360	1.8e-10	PPR repeat
PPR_2	PF13041	331 - 380	3.6e-17	PPR repeat family
PPR	PF01535	334 - 361	4.3e-06	PPR repeat
PPR_3	PF13812	354 - 411	7e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	363 - 395	3.4e-14	PPR repeat
PPR_2	PF13041	366 - 415	8.7e-17	PPR repeat family
PPR	PF01535	369 - 398	6.5e-09	PPR repeat
PPR_1	PF12854	398 - 430	1.4e-06	PPR repeat
PPR	PF01535	404 - 434	7.1e-06	PPR repeat
PPR_long	PF17177	422 - 535	9.9e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	433 - 465	4.2e-06	PPR repeat
PPR	PF01535	439 - 469	1.7e-06	PPR repeat
PPR_2	PF13041	439 - 485	5.4e-12	PPR repeat family
PPR_1	PF12854	467 - 490	9.4e-06	PPR repeat
PPR_2	PF13041	471 - 515	8.9e-07	PPR repeat family
PPR_2	PF13041	506 - 554	1.9e-06	PPR repeat family
PPR_2	PF13041	542 - 589	1.1e-07	PPR repeat family
TPR_24	PF23276	562 - 670	2.6e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	577 - 625	4.2e-11	PPR repeat family
PPR_2	PF13041	647 - 695	1.4e-13	PPR repeat family
PPR_1	PF12854	678 - 706	1.4e-06	PPR repeat
PPR_2	PF13041	753 - 801	2.6e-09	PPR repeat family
PPR_2	PF13041	787 - 835	5.8e-07	PPR repeat family
PPR_2	PF13041	857 - 905	3.3e-06	PPR repeat family
PPR_long	PF17177	876 - 1013	5.8e-08	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	969 - 1060	3.7e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	969 - 1011	1.2e-07	PPR repeat family
PPR_2	PF13041	997 - 1045	6.7e-09	PPR repeat family
PPR_3	PF13812	1025 - 1079	8.2e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	1029 - 1061	8.7e-08	PPR repeat
PPR_2	PF13041	1033 - 1078	8e-15	PPR repeat family
PPR	PF01535	1036 - 1065	7.5e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55840 AT5G55840 AT5G55840
fragaria_vesca	FvH4_3g42930
malus_domestica	MD03G1028500.v1.1
prunus_persica	Prupe.6G024500_v2.0.a1 Prupe.6G024500_v2.0.a1
pyrus_communis	pycom03g02310
rosa_chinensis	RchiOBHm_Chr5g0076971
rosa_laevigata	RLG00000036637
rosa_multiflora	Rmu_sc0004655.1_g000020
rosa_roxburghii	Rroxscaffold_1G00005180
rosa_rugosa	Rorug05G0449800 Rorug05G0449900
rosa_samantha	Rh5AG504500 Rh5BG526200 Rh5CG550100 Rh5DG538400
rosa_wichuraiana	Rw5G047180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	798, 1113
AccI	GTMKAC	4 cut(s)	581, 1322, 1855, 2786
AccII	CGCG	1 cut(s)	2733
AciI	CCGC	2 cut(s)	2673, 2731
AcoI	YGGCCR	4 cut(s)	1053, 1612, 2527, 2763
AcsI	RAATTY	8 cut(s)	33, 269, 1901, 1987, 2139, 2718, 3310, 3349
AcuI	CTGAAG	2 cut(s)	100, 459
AdeI	CACNNNGTG	1 cut(s)	1661
AfiI	CCNNNNNNNGG	2 cut(s)	2365, 3049
AflIII	ACRYGT	3 cut(s)	1471, 1634, 2477
AjnI	CCWGG	3 cut(s)	295, 377, 1395
AjuI	GAANNNNNNNTTGG	2 cut(s)	504, 536
Alw21I	GWGCWC	2 cut(s)	130, 1437
Alw26I	GTCTC	2 cut(s)	1964, 3197
AoxI	GGCC	9 cut(s)	261, 569, 1053, 1507, 1612, 2182, 2344, 2527, 2763
ApeKI	GCWGC	9 cut(s)	842, 1682, 1699, 1710, 2102, 2210, 3104, 3155, 3230
ApoI	RAATTY	8 cut(s)	33, 269, 1901, 1987, 2139, 2718, 3310, 3349
AseI	ATTAAT	2 cut(s)	1020, 2808
Asp700I	GAANNNNTTC	1 cut(s)	272
AspLEI	GCGC	1 cut(s)	2735
AspS9I	GGNCC	2 cut(s)	1393, 2344
AsuC2I	CCSGG	1 cut(s)	1669
AsuHPI	GGTGA	5 cut(s)	1086, 1820, 2139, 3155, 3275
AsuII	TTCGAA	1 cut(s)	2974
AvaII	GGWCC	1 cut(s)	1393
AxyI	CCTNAGG	3 cut(s)	148, 1783, 2205
BalI	TGGCCA	4 cut(s)	1055, 1614, 2529, 2765
BanII	GRGCYC	2 cut(s)	130, 1134
BarI	GAAGNNNNNNTAC	2 cut(s)	2550, 2582
BbsI	GAAGAC	1 cut(s)	2738
Bbv12I	GWGCWC	2 cut(s)	130, 1437
BbvI	GCAGC	9 cut(s)	854, 1669, 1711, 1722, 2089, 2197, 3091, 3142, 3217
BceAI	ACGGC	1 cut(s)	556
BcgI	CGANNNNNNTGC	4 cut(s)	1555, 1589, 3086, 3120
BciT130I	CCWGG	3 cut(s)	297, 379, 1397
BciVI	GTATCC	3 cut(s)	439, 2282, 2387
BclI	TGATCA	2 cut(s)	859, 2445
BcnI	CCSGG	1 cut(s)	1669
BcoDI	GTCTC	2 cut(s)	1964, 3197
BfaI	CTAG	7 cut(s)	354, 360, 599, 741, 1833, 2174, 2642
BfmI	CTRYAG	3 cut(s)	189, 531, 1683
BfuI	GTATCC	3 cut(s)	439, 2282, 2387
BglII	AGATCT	1 cut(s)	1587
BisI	GCNGC	9 cut(s)	843, 1683, 1700, 1711, 2103, 2211, 3105, 3156, 3231
BlsI	GCNGC	9 cut(s)	844, 1684, 1701, 1712, 2104, 2212, 3106, 3157, 3232
BmcAI	AGTACT	2 cut(s)	688, 1273
Bme1390I	CCNGG	4 cut(s)	297, 379, 1397, 1669
Bme18I	GGWCC	1 cut(s)	1393
BmgT120I	GGNCC	2 cut(s)	1393, 2344
BmiI	GGNNCC	3 cut(s)	76, 1673, 2345
BmrFI	CCNGG	4 cut(s)	297, 379, 1397, 1669
BmrI	ACTGGG	1 cut(s)	289
BmsI	GCATC	6 cut(s)	638, 1768, 1930, 2744, 2940, 3006
BmuI	ACTGGG	1 cut(s)	289
BpiI	GAAGAC	1 cut(s)	2738
Bpu14I	TTCGAA	1 cut(s)	2974
BpuEI	CTTGAG	2 cut(s)	526, 2278
BpuMI	CCSGG	1 cut(s)	1669
BsaAI	YACGTR	1 cut(s)	2055
BsaI	GGTCTC	1 cut(s)	3197
BsaJI	CCNNGG	2 cut(s)	1059, 1675
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	2 cut(s)	2365, 3049
Bse1I	ACTGG	2 cut(s)	284, 1447
Bse21I	CCTNAGG	3 cut(s)	148, 1783, 2205
Bse3DI	GCAATG	2 cut(s)	2892, 3363
BseBI	CCWGG	3 cut(s)	297, 379, 1397
BseDI	CCNNGG	2 cut(s)	1059, 1675
BseLI	CCNNNNNNNGG	2 cut(s)	2365, 3049
BseMI	GCAATG	2 cut(s)	2892, 3363
BseMII	CTCAG	7 cut(s)	70, 162, 1177, 1959, 2268, 2601, 2889
BseNI	ACTGG	2 cut(s)	284, 1447
BseXI	GCAGC	9 cut(s)	854, 1669, 1711, 1722, 2089, 2197, 3091, 3142, 3217
BseYI	CCCAGC	2 cut(s)	1457, 2072
BsgI	GTGCAG	2 cut(s)	1638, 1891
Bsh1236I	CGCG	1 cut(s)	2733
BshFI	GGCC	9 cut(s)	263, 571, 1055, 1509, 1614, 2184, 2346, 2529, 2765
BsiHKAI	GWGCWC	2 cut(s)	130, 1437
BsiSI	CCGG	1 cut(s)	1668
BslFI	GGGAC	2 cut(s)	1206, 2341
BslI	CCNNNNNNNGG	2 cut(s)	2365, 3049
BsmAI	GTCTC	2 cut(s)	1964, 3197
BsmFI	GGGAC	2 cut(s)	1206, 2341
BsmI	GAATGC	3 cut(s)	1290, 1923, 2982
BsnI	GGCC	9 cut(s)	263, 571, 1055, 1509, 1614, 2184, 2346, 2529, 2765
Bso31I	GGTCTC	1 cut(s)	3197
Bsp119I	TTCGAA	1 cut(s)	2974
Bsp1286I	GDGCHC	3 cut(s)	130, 1134, 1437
Bsp1407I	TGTACA	4 cut(s)	896, 1950, 2163, 3168
Bsp143I	GATC	7 cut(s)	859, 1587, 2323, 2445, 2572, 2857, 2962
BspACI	CCGC	2 cut(s)	2673, 2731
BspANI	GGCC	9 cut(s)	263, 571, 1055, 1509, 1614, 2184, 2346, 2529, 2765
BspCNI	CTCAG	7 cut(s)	69, 161, 1176, 1960, 2267, 2602, 2890
BspFNI	CGCG	1 cut(s)	2733
BspHI	TCATGA	1 cut(s)	2652
BspLI	GGNNCC	3 cut(s)	76, 1673, 2345
BspMAI	CTGCAG	1 cut(s)	1687
BspT104I	TTCGAA	1 cut(s)	2974
BspTNI	GGTCTC	1 cut(s)	3197
BsrDI	GCAATG	2 cut(s)	2892, 3363
BsrGI	TGTACA	4 cut(s)	896, 1950, 2163, 3168
BsrI	ACTGG	2 cut(s)	284, 1447
BssECI	CCNNGG	2 cut(s)	1059, 1675
BssMI	GATC	7 cut(s)	859, 1587, 2323, 2445, 2572, 2857, 2962
BssNAI	GTATAC	4 cut(s)	582, 1323, 1856, 2787
BssT1I	CCWWGG	2 cut(s)	1059, 1675
Bst1107I	GTATAC	4 cut(s)	582, 1323, 1856, 2787
Bst2UI	CCWGG	3 cut(s)	297, 379, 1397
Bst4CI	ACNGT	5 cut(s)	935, 1220, 1497, 2060, 2712
Bst6I	CTCTTC	4 cut(s)	1558, 2223, 3225, 3261
BstAUI	TGTACA	4 cut(s)	896, 1950, 2163, 3168
BstBAI	YACGTR	1 cut(s)	2055
BstBI	TTCGAA	1 cut(s)	2974
BstC8I	GCNNGC	6 cut(s)	660, 1244, 1507, 2422, 2922, 2969
BstEII	GGTNACC	1 cut(s)	1000
BstENI	CCTNNNNNAGG	1 cut(s)	3047
BstFNI	CGCG	1 cut(s)	2733
BstHHI	GCGC	1 cut(s)	2735
BstKTI	GATC	7 cut(s)	862, 1590, 2326, 2448, 2575, 2860, 2965
BstMAI	GTCTC	2 cut(s)	1964, 3197
BstMBI	GATC	7 cut(s)	859, 1587, 2323, 2445, 2572, 2857, 2962
BstMWI	GCNNNNNNNGC	8 cut(s)	608, 1511, 1787, 1940, 2732, 2903, 2977, 3044
BstNI	CCWGG	3 cut(s)	297, 379, 1397
BstNSI	RCATGY	7 cut(s)	910, 1475, 1638, 1977, 2424, 2481, 2971
BstPI	GGTNACC	1 cut(s)	1000
BstSCI	CCNGG	4 cut(s)	295, 377, 1395, 1667
BstSFI	CTRYAG	3 cut(s)	189, 531, 1683
BstSNI	TACGTA	1 cut(s)	2055
BstUI	CGCG	1 cut(s)	2733
BstV1I	GCAGC	9 cut(s)	854, 1669, 1711, 1722, 2089, 2197, 3091, 3142, 3217
BstV2I	GAAGAC	1 cut(s)	2738
BstX2I	RGATCY	1 cut(s)	1587
BstYI	RGATCY	1 cut(s)	1587
BstZ17I	GTATAC	4 cut(s)	582, 1323, 1856, 2787
Bsu36I	CCTNAGG	3 cut(s)	148, 1783, 2205
BsuI	GTATCC	3 cut(s)	439, 2282, 2387
BsuRI	GGCC	9 cut(s)	263, 571, 1055, 1509, 1614, 2184, 2346, 2529, 2765
BtgZI	GCGATG	2 cut(s)	1791, 2963
BtsI	GCAGTG	2 cut(s)	1617, 3332
BtsIMutI	CAGTG	4 cut(s)	206, 1437, 1617, 3332
Cac8I	GCNNGC	6 cut(s)	660, 1244, 1507, 2422, 2922, 2969
CciI	TCATGA	1 cut(s)	2652
CfoI	GCGC	1 cut(s)	2735
Cfr13I	GGNCC	2 cut(s)	1393, 2344
DpnI	GATC	7 cut(s)	861, 1589, 2325, 2447, 2574, 2859, 2964
DpnII	GATC	7 cut(s)	859, 1587, 2323, 2445, 2572, 2857, 2962
DraI	TTTAAA	2 cut(s)	1230, 1584
DraIII	CACNNNGTG	1 cut(s)	1661
EaeI	YGGCCR	4 cut(s)	1053, 1612, 2527, 2763
Eam1104I	CTCTTC	4 cut(s)	1558, 2223, 3225, 3261
EarI	CTCTTC	4 cut(s)	1558, 2223, 3225, 3261
Ecl136II	GAGCTC	1 cut(s)	128
Eco105I	TACGTA	1 cut(s)	2055
Eco130I	CCWWGG	2 cut(s)	1059, 1675
Eco24I	GRGCYC	2 cut(s)	130, 1134
Eco31I	GGTCTC	1 cut(s)	3197
Eco32I	GATATC	1 cut(s)	3303
Eco47I	GGWCC	1 cut(s)	1393
Eco53kI	GAGCTC	1 cut(s)	128
Eco57I	CTGAAG	2 cut(s)	100, 459
Eco81I	CCTNAGG	3 cut(s)	148, 1783, 2205
Eco91I	GGTNACC	1 cut(s)	1000
EcoICRI	GAGCTC	1 cut(s)	128
EcoNI	CCTNNNNNAGG	1 cut(s)	3047
EcoO65I	GGTNACC	1 cut(s)	1000
EcoRII	CCWGG	3 cut(s)	295, 377, 1395
EcoRV	GATATC	1 cut(s)	3303
EcoT14I	CCWWGG	2 cut(s)	1059, 1675
EcoT38I	GRGCYC	2 cut(s)	130, 1134
ErhI	CCWWGG	2 cut(s)	1059, 1675
FalI	AAGNNNNNCTT	6 cut(s)	714, 746, 1258, 1290, 3027, 3059
FaqI	GGGAC	2 cut(s)	1206, 2341
FauNDI	CATATG	2 cut(s)	864, 1704
FbaI	TGATCA	2 cut(s)	859, 2445
FblI	GTMKAC	4 cut(s)	581, 1322, 1855, 2786
Fnu4HI	GCNGC	9 cut(s)	843, 1683, 1700, 1711, 2103, 2211, 3105, 3156, 3231
FriOI	GRGCYC	2 cut(s)	130, 1134
Fsp4HI	GCNGC	9 cut(s)	843, 1683, 1700, 1711, 2103, 2211, 3105, 3156, 3231
FspBI	CTAG	7 cut(s)	354, 360, 599, 741, 1833, 2174, 2642
GlaI	GCGC	1 cut(s)	2734
GluI	GCNGC	9 cut(s)	843, 1683, 1700, 1711, 2103, 2211, 3105, 3156, 3231
GsaI	CCCAGC	2 cut(s)	1461, 2076
HaeIII	GGCC	9 cut(s)	263, 571, 1055, 1509, 1614, 2184, 2346, 2529, 2765
HapII	CCGG	1 cut(s)	1668
HhaI	GCGC	1 cut(s)	2735
Hin6I	GCGC	1 cut(s)	2733
HinP1I	GCGC	1 cut(s)	2733
HindIII	AAGCTT	3 cut(s)	728, 1148, 1578
HpaII	CCGG	1 cut(s)	1668
HphI	GGTGA	5 cut(s)	1086, 1820, 2139, 3155, 3275
Hpy166II	GTNNAC	9 cut(s)	502, 582, 1323, 1493, 1856, 1951, 2166, 2787, 3216
Hpy188III	TCNNGA	6 cut(s)	1412, 2012, 2191, 2653, 2960, 3306
Hpy8I	GTNNAC	9 cut(s)	502, 582, 1323, 1493, 1856, 1951, 2166, 2787, 3216
Hpy99I	CGWCG	1 cut(s)	577
HpyCH4III	ACNGT	5 cut(s)	935, 1220, 1497, 2060, 2712
HpyCH4IV	ACGT	2 cut(s)	2054, 3212
HpyF10VI	GCNNNNNNNGC	8 cut(s)	608, 1511, 1787, 1940, 2732, 2903, 2977, 3044
HpySE526I	ACGT	2 cut(s)	2054, 3212
HspAI	GCGC	1 cut(s)	2733
Ksp22I	TGATCA	2 cut(s)	859, 2445
Kzo9I	GATC	7 cut(s)	859, 1587, 2323, 2445, 2572, 2857, 2962
LmnI	GCTCC	4 cut(s)	391, 1787, 2693, 2840
Lsp1109I	GCAGC	9 cut(s)	854, 1669, 1711, 1722, 2089, 2197, 3091, 3142, 3217
LweI	GCATC	6 cut(s)	638, 1768, 1930, 2744, 2940, 3006
MaeI	CTAG	7 cut(s)	354, 360, 599, 741, 1833, 2174, 2642
MaeII	ACGT	2 cut(s)	2054, 3212
MalI	GATC	7 cut(s)	861, 1589, 2325, 2447, 2574, 2859, 2964
MboI	GATC	7 cut(s)	859, 1587, 2323, 2445, 2572, 2857, 2962
MfeI	CAATTG	3 cut(s)	404, 811, 3344
MflI	RGATCY	1 cut(s)	1587
MhlI	GDGCHC	3 cut(s)	130, 1134, 1437
MlsI	TGGCCA	4 cut(s)	1055, 1614, 2529, 2765
MluNI	TGGCCA	4 cut(s)	1055, 1614, 2529, 2765
MlyI	GAGTC	6 cut(s)	212, 365, 410, 1161, 2006, 2516
MmeI	TCCRAC	1 cut(s)	3014
Mox20I	TGGCCA	4 cut(s)	1055, 1614, 2529, 2765
MroXI	GAANNNNTTC	1 cut(s)	272
MscI	TGGCCA	4 cut(s)	1055, 1614, 2529, 2765
MslI	CAYNNNNRTG	2 cut(s)	634, 3084
Msp20I	TGGCCA	4 cut(s)	1055, 1614, 2529, 2765
MspI	CCGG	1 cut(s)	1668
MspR9I	CCNGG	4 cut(s)	297, 379, 1397, 1669
MunI	CAATTG	3 cut(s)	404, 811, 3344
Mva1269I	GAATGC	3 cut(s)	1290, 1923, 2982
MvaI	CCWGG	3 cut(s)	297, 379, 1397
MvnI	CGCG	1 cut(s)	2733
MwoI	GCNNNNNNNGC	8 cut(s)	608, 1511, 1787, 1940, 2732, 2903, 2977, 3044
NciI	CCSGG	1 cut(s)	1669
NdeI	CATATG	2 cut(s)	864, 1704
NdeII	GATC	7 cut(s)	859, 1587, 2323, 2445, 2572, 2857, 2962
NlaIV	GGNNCC	3 cut(s)	76, 1673, 2345
NmuCI	GTSAC	5 cut(s)	204, 2145, 2480, 2878, 2888
NspI	RCATGY	7 cut(s)	910, 1475, 1638, 1977, 2424, 2481, 2971
NspV	TTCGAA	1 cut(s)	2974
PaeI	GCATGC	2 cut(s)	2424, 2971
PagI	TCATGA	1 cut(s)	2652
PciI	ACATGT	3 cut(s)	1471, 1634, 2477
PcsI	WCGNNNNNNNCGW	1 cut(s)	2971
PctI	GAATGC	3 cut(s)	1290, 1923, 2982
PdmI	GAANNNNTTC	1 cut(s)	272
PfeI	GAWTC	6 cut(s)	595, 1367, 1408, 1446, 1603, 2656
PfoI	TCCNGGA	1 cut(s)	1395
PkrI	GCNGC	9 cut(s)	844, 1684, 1701, 1712, 2104, 2212, 3106, 3157, 3232
PleI	GAGTC	6 cut(s)	211, 365, 410, 1161, 2005, 2515
PpsI	GAGTC	6 cut(s)	211, 365, 410, 1161, 2005, 2515
Ppu21I	YACGTR	1 cut(s)	2055
PscI	ACATGT	3 cut(s)	1471, 1634, 2477
PshBI	ATTAAT	2 cut(s)	1020, 2808
PsiI	TTATAA	2 cut(s)	798, 1113
Psp124BI	GAGCTC	1 cut(s)	130
Psp6I	CCWGG	3 cut(s)	295, 377, 1395
PspEI	GGTNACC	1 cut(s)	1000
PspFI	CCCAGC	2 cut(s)	1457, 2072
PspGI	CCWGG	3 cut(s)	295, 377, 1395
PspN4I	GGNNCC	3 cut(s)	76, 1673, 2345
PspPI	GGNCC	2 cut(s)	1393, 2344
PstI	CTGCAG	1 cut(s)	1687
PsuI	RGATCY	1 cut(s)	1587
RseI	CAYNNNNRTG	2 cut(s)	634, 3084
SacI	GAGCTC	1 cut(s)	130
SatI	GCNGC	9 cut(s)	843, 1683, 1700, 1711, 2103, 2211, 3105, 3156, 3231
Sau3AI	GATC	7 cut(s)	859, 1587, 2323, 2445, 2572, 2857, 2962
Sau96I	GGNCC	2 cut(s)	1393, 2344
ScaI	AGTACT	2 cut(s)	688, 1273
SchI	GAGTC	6 cut(s)	212, 365, 410, 1161, 2006, 2516
ScrFI	CCNGG	4 cut(s)	297, 379, 1397, 1669
SduI	GDGCHC	3 cut(s)	130, 1134, 1437
SfaNI	GCATC	6 cut(s)	638, 1768, 1930, 2744, 2940, 3006
SfcI	CTRYAG	3 cut(s)	189, 531, 1683
SfuI	TTCGAA	1 cut(s)	2974
SinI	GGWCC	1 cut(s)	1393
SmiMI	CAYNNNNRTG	2 cut(s)	634, 3084
SmlI	CTYRAG	2 cut(s)	505, 2293
SmoI	CTYRAG	2 cut(s)	505, 2293
SnaBI	TACGTA	1 cut(s)	2055
SphI	GCATGC	2 cut(s)	2424, 2971
SsiI	CCGC	2 cut(s)	2673, 2731
SspMI	CTAG	7 cut(s)	354, 360, 599, 741, 1833, 2174, 2642
SstI	GAGCTC	1 cut(s)	130
StyD4I	CCNGG	4 cut(s)	295, 377, 1395, 1667
StyI	CCWWGG	2 cut(s)	1059, 1675
TaaI	ACNGT	5 cut(s)	935, 1220, 1497, 2060, 2712
TaiI	ACGT	2 cut(s)	2057, 3215
TaqI	TCGA	4 cut(s)	419, 1575, 2974, 3096
TaqII	GACCGA	1 cut(s)	210
TatI	WGTACW	7 cut(s)	686, 896, 1271, 1950, 2163, 2250, 3168
TfiI	GAWTC	6 cut(s)	595, 1367, 1408, 1446, 1603, 2656
TscAI	CASTG	4 cut(s)	213, 1437, 1624, 3339
TseFI	GTSAC	5 cut(s)	204, 2145, 2480, 2878, 2888
TseI	GCWGC	9 cut(s)	842, 1682, 1699, 1710, 2102, 2210, 3104, 3155, 3230
Tsp45I	GTSAC	5 cut(s)	204, 2145, 2480, 2878, 2888
TspGWI	ACGGA	1 cut(s)	2103
TspRI	CASTG	4 cut(s)	213, 1437, 1624, 3339
VpaK11BI	GGWCC	1 cut(s)	1393
VspI	ATTAAT	2 cut(s)	1020, 2808
XagI	CCTNNNNNAGG	1 cut(s)	3047
XapI	RAATTY	8 cut(s)	33, 269, 1901, 1987, 2139, 2718, 3310, 3349
XceI	RCATGY	7 cut(s)	910, 1475, 1638, 1977, 2424, 2481, 2971
XcmI	CCANNNNNNNNNTGG	1 cut(s)	385
XmiI	GTMKAC	4 cut(s)	581, 1322, 1855, 2786
XmnI	GAANNNNTTC	1 cut(s)	272
XspI	CTAG	7 cut(s)	354, 360, 599, 741, 1833, 2174, 2642
ZrmI	AGTACT	2 cut(s)	688, 1273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.