Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0012309

Physical Location & Seq

Genomic Coordinates Reverse (-)

76640520 .. 76645851

Gene Structure 5332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG550100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3402 bp

ATGTTGTTGCCTTCCAAGACTAAACAACTCTCCCAAATTTCCCACACAATTTCAAAGCTCAGAGCTTTTCATGGTGGTTCCTCTCCAAATGTCAAAAGCAATCTCAAAGAAAATGGCTTCAGAAACAGAGCTCATAGAACCACCCAAACCTCAGGTTCAGATATGGAGAAAAGCATATACTCAATTCTCACTATAGACCGATGGGAGTCACTGAACCACATGGAGTATAAGTTGGCTTCTCTTAGACCAGTGCATGGAAGATTGGCCTTGAAATTCTTCAACTGGGTCATTGAACAGCCTGGTTTGGAACTCAATCATCTCACTCATATACTCTCTGTTACAACTCATATACTTGCTAGAGCTAGAATGTATGACTCTGCCAGGTTAATTTTGGGGCATTTAGCACAATTGGGTGCTGACTCGAAATCTGTTTTTGGTGCTTTGATGGATACTTACCCTCTTTGCAATTCAAGCCCTTCAGTATTTGACCTTTTGATTAGAGTTTACTTGAGGGAAGGGATGGTTGGTAATGCTGTAGAGACTTTTTATTTGATGGGTTTAAGGGGGTTTAGGCCGTCGGGGTATACTTGTAATATGATTCTAGCTTCGTTGGCAAAGGACCAGAGGGTTGCATCGGTGTGGTCTTTTTTCAACGAAATGCTGGCTAATAATGTTTGCCCTGATGTTAGTACTTTTAATATATTGATTAGTGTTTTGTGTGTGGAAGGGAAGCTTAGTAAAGCTAGTTATCTTTTGAGGAAGATGGAAAAGAGTGGTTATGTTCCTAATGTAGTTACTTATAATACTTTGCTCAATTGGTACTGCAAAAAGGGGAGGTATAAAGCAGCTTTTGAGCTTATTGATCATATGGGTTCTAAGGGTATTGAAGCAGATGTATGCACATATAACATGCTTATTGAGGATTTGTGTAGAAACAGTAGTAGTGCGAAAGGTTATTTGCTGTTGAAGAAGATGAGAAGGAAGAAGTTATCTCCTAATCAGGTTACGTACAATATCCTTATTAATGGGTTTGTCAAGGAGGGGAAAATTGGTGTGGCCACCAAGGTTTTTGATGAAATGTCAATGTTTAATCTTTCACCAAATTGTGTTACTTATAATGCTCTGATTGACGGGCTCTGTCAAAAGGGTAAGCTTGAAGAAGCTCTCAGACTCTTGGACATGATGGAAGCTGTGGGACTAAAACCTAATGAAGTCAGCTACGGTGCTGTTTTAAATGGGTTGTGCAAGCATGGTAAGTTTGATTTAGCAAGAAGTACTTTTCAGAGAATGCGATTGAATGGGATTGTTAGTGGTTGCATTATGTATACATCGATCATGGATGGGTTATGCAAAAATGGGTTGCTTGATGAATCTGTGCATTTGCTTAATATGATGGTCCAGGATGGCGTGAATCCTGATATAGTAGCATTTTCAGTGCTCATAACTGGATTCTGCAAAGCTGGGAGGATGAAACATGTAAGAGAAATAATGTGTAAACTGTATAGAGCTGGCCTTGCACCGAATAAAATTATATATTCTACCTTAATCTACTACTCTTGCAAGATGGGCAACATAATTGAAGCATTAAAGATCTATGTAGTTATGAATCGTAATGGCCACACTGCCGACCTTTTCACATGTAACATATTGGTTACTGCACTTTGTGAAGCCGGGAACCTTGGCGCTGCAGAGGATTTCATGCACCATATGAGCAGCATGGGTTTGGTTGCCAATTCCATTTCTTTTGATTGTATGATAAATGGGTATGGAAACATGGGCGATGCCTTAGGAGCGTTTTCTATGTTTGATGAAATGATTAGATTAGGTCATCACCCTAGTCCATTTACTTATGGAAGTATACTGAAAGGGCTATGCAGGGGTGGTCATTTGGAGGTGGCAAGGAAATTTTTGAAGAAACTCCACAGCATTCCATCGGCTGTTGATACTGTTGTGTACAATACAATACTTTCTGAGACATGCAATTCTGGGAATTTGCAAGAGTCTGTTGTCCTTCTTGATGCGATGGTTGAGAATAATGTCCTGCCCGATACTCATACGTACAGTAGCCTTCTTGCTGGGTTATGCAGGAAGGGAAAAGTGGTTGCTGCCATCCTATTGTTTGGGAGAGTTATGGAAAAAGGAATTTTGTCAGCAAATCCCATAATGTACACCTGTCTAGTTGATGGCCTTTTCAAGATTGGGCAACCTAAGGCTGCTTCATATCTATTTGAAGAGATGGAGAACAAAGGTCTGTACTCAGATACTATTTCTCTTAATGTAATGATGGATGGATACTCAAGGATGGGGAATATGATGAAGGCAAATGATCTCTTTTCAACTATGGGGGGCCGAAGATTGTCCCCCAATTTGGCTTCATGTAACATTCTGTTGCATGGATACTCAAAGAAACAAGACTTATTGGCATGCTCTATGGTGTACAAAAACATGATCAGGGTCAAATTATTGCCTGACAAATTGACATGTCACTCTCTTATTCTTGGATTATGTGAGTCAGGTAAGGTGGATATTGGCCACAAAATGTTGCATAAGATGATTATGGAAGGTGCTGTACCTGATCTTTTAACATTCAATTTGCTTATTAGCAAGTATTCTGAGATTGGGAAGATAGGGATGGCATTTGAGCTAGTGAGTGTCATGAATCTGTTAGGAGTTTCCGCTAATACAGACACTCATGGAGCAATCTTAAATGGACTGTTCAGAATTTCAGCTTTCCGCGCATCCCGTAGTCTTCTGTATGAAATGTTGGCCAAAGGATTTACTCCCAAGTATACAAATTATTTCACTATAATTAATGGTATGTGTAGAGTGGGAGATATACAAGGAGCATTTGAACTAAAAGATCAGATGGAAGCTCTTGGTGTCACTTCCTGTGACATTGCTGAGAGTGCTATGGTTAGAGGGCTTGCGAAATGTGGGAAGGTTGAAGAAGCGATGCTGGTTCTTGATCGCATGCTTCGAATGCAACTTGTTCCAACTACTGCTACTTTTACTACTTTGATGCATAAGTTCTGCAAAGAAGCCAACCTTGCAGAGGCTCTAAGATTGAGGGGTGTAATGGGACATTGTGGTGTGCCACTCGATGTTGCTGCTTTTAATGTTCTCATTTCAGGTCTTTGTGCTAATGGTGATGTTGTGGCTGCATTTGAGCTGTACAAGGAGATGAAACGAAGTGGTCTCTTGCCCAACACAACAACGTACACTCTTCTCCTTGCTGCTGTTTCCTCTGGTAATAATCACATTGAAGGTGAAGAGATTTTGGGAGATTTATTGGGAAAGGGGTTGATATCTGGAAATTTGGATGGAAGCACCTTAACACTGCATGACCAATTGAATGTTGCAATGGGAACATTAAACTCTTGGAGGTGCAATAAGTGGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

1133

Amino Acids

125.03

Weight (kDa)

8.88

Isoelectric Point (pI)

31.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	196 - 240	1.7e-10	PPR repeat family
PPR_long	PF17177	206 - 344	1.6e-11	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	217 - 275	3.5e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	224 - 256	1.9e-09	PPR repeat
PPR_2	PF13041	227 - 269	3.2e-11	PPR repeat family
TPR_24	PF23276	251 - 359	3.9e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	251 - 307	3.1e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	259 - 290	2.4e-11	PPR repeat
PPR_2	PF13041	262 - 311	7.6e-19	PPR repeat family
PPR	PF01535	265 - 295	1.9e-07	PPR repeat
PPR_3	PF13812	286 - 346	5.4e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	298 - 346	1e-12	PPR repeat family
PPR_long	PF17177	313 - 419	3.7e-09	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	329 - 361	1.8e-10	PPR repeat
PPR_2	PF13041	332 - 381	3.6e-17	PPR repeat family
PPR	PF01535	335 - 362	4.3e-06	PPR repeat
PPR_3	PF13812	355 - 412	7e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	364 - 396	3.4e-14	PPR repeat
PPR_2	PF13041	367 - 416	8.8e-17	PPR repeat family
PPR	PF01535	370 - 399	6.5e-09	PPR repeat
PPR_1	PF12854	399 - 431	1.4e-06	PPR repeat
PPR	PF01535	405 - 435	7.1e-06	PPR repeat
PPR_long	PF17177	423 - 537	4.1e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	434 - 466	4.2e-06	PPR repeat
PPR_2	PF13041	440 - 486	5.4e-12	PPR repeat family
PPR	PF01535	440 - 470	1.7e-06	PPR repeat
PPR_1	PF12854	468 - 491	9.4e-06	PPR repeat
PPR_2	PF13041	472 - 520	3.4e-07	PPR repeat family
PPR_2	PF13041	507 - 555	4.6e-08	PPR repeat family
PPR_2	PF13041	543 - 589	1.1e-07	PPR repeat family
TPR_24	PF23276	563 - 670	5e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	578 - 626	4.2e-11	PPR repeat family
PPR_2	PF13041	648 - 696	8.8e-13	PPR repeat family
PPR_1	PF12854	679 - 707	2.8e-06	PPR repeat
PPR_2	PF13041	721 - 764	1.1e-07	PPR repeat family
PPR_2	PF13041	754 - 802	2.3e-09	PPR repeat family
PPR_2	PF13041	788 - 836	5.7e-07	PPR repeat family
PPR_2	PF13041	858 - 906	3.3e-06	PPR repeat family
PPR_long	PF17177	877 - 1014	4.6e-08	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	969 - 1061	6.3e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	970 - 1012	1.1e-07	PPR repeat family
PPR_3	PF13812	1029 - 1080	6.3e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	1030 - 1062	1.5e-07	PPR repeat
PPR_2	PF13041	1034 - 1079	9.3e-15	PPR repeat family
PPR	PF01535	1037 - 1066	1.2e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55840 AT5G55840 AT5G55840
fragaria_vesca	FvH4_3g42930
malus_domestica	MD03G1028500.v1.1
prunus_persica	Prupe.6G024500_v2.0.a1 Prupe.6G024500_v2.0.a1
pyrus_communis	pycom03g02310
rosa_chinensis	RchiOBHm_Chr5g0076971
rosa_laevigata	RLG00000036637
rosa_multiflora	Rmu_sc0004655.1_g000020
rosa_roxburghii	Rroxscaffold_1G00005180
rosa_rugosa	Rorug05G0449800 Rorug05G0449900
rosa_samantha	Rh5AG504500 Rh5BG526200 Rh5CG550100 Rh5DG538400
rosa_wichuraiana	Rw5G047180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	801, 1116
AccB7I	CCANNNNNTGG	1 cut(s)	254
AccI	GTMKAC	4 cut(s)	584, 1325, 1858, 2789
AccII	CGCG	1 cut(s)	2736
AciI	CCGC	2 cut(s)	2676, 2734
AcoI	YGGCCR	4 cut(s)	1056, 1615, 2530, 2766
AcsI	RAATTY	7 cut(s)	36, 272, 1904, 1990, 2142, 2721, 3313
AcuI	CTGAAG	2 cut(s)	103, 462
AdeI	CACNNNGTG	1 cut(s)	1664
AfiI	CCNNNNNNNGG	3 cut(s)	254, 2368, 3052
AflIII	ACRYGT	3 cut(s)	1474, 1637, 2480
AjnI	CCWGG	3 cut(s)	298, 380, 1398
AjuI	GAANNNNNNNTTGG	2 cut(s)	507, 539
Alw21I	GWGCWC	2 cut(s)	133, 1440
Alw26I	GTCTC	3 cut(s)	533, 1967, 3200
AoxI	GGCC	9 cut(s)	264, 572, 1056, 1510, 1615, 2185, 2347, 2530, 2766
ApeKI	GCWGC	8 cut(s)	845, 1685, 1713, 2105, 2213, 3107, 3158, 3233
ApoI	RAATTY	7 cut(s)	36, 272, 1904, 1990, 2142, 2721, 3313
ArsI	GACNNNNNNTTYG	2 cut(s)	532, 564
AseI	ATTAAT	2 cut(s)	1023, 2811
Asp700I	GAANNNNTTC	1 cut(s)	275
AspLEI	GCGC	2 cut(s)	1685, 2738
AspS9I	GGNCC	3 cut(s)	619, 1396, 2347
AsuC2I	CCSGG	1 cut(s)	1672
AsuHPI	GGTGA	4 cut(s)	1089, 1823, 3158, 3278
AsuII	TTCGAA	1 cut(s)	2977
AvaII	GGWCC	2 cut(s)	619, 1396
AxyI	CCTNAGG	3 cut(s)	151, 1786, 2208
BaeI	ACNNNNGTAYC	2 cut(s)	1935, 1968
BalI	TGGCCA	4 cut(s)	1058, 1617, 2532, 2768
BanII	GRGCYC	2 cut(s)	133, 1137
BarI	GAAGNNNNNNTAC	2 cut(s)	2553, 2585
BbsI	GAAGAC	1 cut(s)	2741
Bbv12I	GWGCWC	2 cut(s)	133, 1440
BbvI	GCAGC	8 cut(s)	857, 1672, 1725, 2092, 2200, 3094, 3145, 3220
BceAI	ACGGC	1 cut(s)	559
BcgI	CGANNNNNNTGC	2 cut(s)	3089, 3123
BciT130I	CCWGG	3 cut(s)	300, 382, 1400
BciVI	GTATCC	3 cut(s)	442, 2285, 2390
BclI	TGATCA	2 cut(s)	862, 2448
BcnI	CCSGG	1 cut(s)	1672
BcoDI	GTCTC	3 cut(s)	533, 1967, 3200
BfaI	CTAG	7 cut(s)	357, 363, 602, 744, 1836, 2177, 2645
BfmI	CTRYAG	3 cut(s)	192, 534, 1686
BfoI	RGCGCY	1 cut(s)	1686
BfuI	GTATCC	3 cut(s)	442, 2285, 2390
BglII	AGATCT	1 cut(s)	1590
BisI	GCNGC	8 cut(s)	846, 1686, 1714, 2106, 2214, 3108, 3159, 3234
BlsI	GCNGC	8 cut(s)	847, 1687, 1715, 2107, 2215, 3109, 3160, 3235
BmcAI	AGTACT	2 cut(s)	691, 1276
Bme1390I	CCNGG	4 cut(s)	300, 382, 1400, 1672
Bme18I	GGWCC	2 cut(s)	619, 1396
BmgT120I	GGNCC	3 cut(s)	619, 1396, 2347
BmiI	GGNNCC	3 cut(s)	79, 1676, 2348
BmrFI	CCNGG	4 cut(s)	300, 382, 1400, 1672
BmrI	ACTGGG	1 cut(s)	292
BmsI	GCATC	6 cut(s)	641, 1771, 2008, 2747, 2943, 3009
BmuI	ACTGGG	1 cut(s)	292
BpiI	GAAGAC	1 cut(s)	2741
Bpu14I	TTCGAA	1 cut(s)	2977
BpuEI	CTTGAG	2 cut(s)	529, 2281
BpuMI	CCSGG	1 cut(s)	1672
Bsa29I	ATCGAT	1 cut(s)	1331
BsaAI	YACGTR	2 cut(s)	1008, 2058
BsaI	GGTCTC	1 cut(s)	3200
BsaJI	CCNNGG	2 cut(s)	1062, 1678
BsaXI	ACNNNNNCTCC	2 cut(s)	215, 245
Bsc4I	CCNNNNNNNGG	3 cut(s)	254, 2368, 3052
Bse1I	ACTGG	3 cut(s)	248, 287, 1450
Bse21I	CCTNAGG	3 cut(s)	151, 1786, 2208
Bse3DI	GCAATG	2 cut(s)	2895, 3366
BseBI	CCWGG	3 cut(s)	300, 382, 1400
BseCI	ATCGAT	1 cut(s)	1331
BseDI	CCNNGG	2 cut(s)	1062, 1678
BseLI	CCNNNNNNNGG	3 cut(s)	254, 2368, 3052
BseMI	GCAATG	2 cut(s)	2895, 3366
BseMII	CTCAG	7 cut(s)	73, 165, 1180, 1962, 2271, 2604, 2892
BseNI	ACTGG	3 cut(s)	248, 287, 1450
BseXI	GCAGC	8 cut(s)	857, 1672, 1725, 2092, 2200, 3094, 3145, 3220
BseYI	CCCAGC	2 cut(s)	1460, 2075
BsgI	GTGCAG	1 cut(s)	1641
Bsh1236I	CGCG	1 cut(s)	2736
BshFI	GGCC	9 cut(s)	266, 574, 1058, 1512, 1617, 2187, 2349, 2532, 2768
BshVI	ATCGAT	1 cut(s)	1331
BsiHKAI	GWGCWC	2 cut(s)	133, 1440
BsiSI	CCGG	1 cut(s)	1671
BslFI	GGGAC	3 cut(s)	1209, 2344, 3093
BslI	CCNNNNNNNGG	3 cut(s)	254, 2368, 3052
BsmAI	GTCTC	3 cut(s)	533, 1967, 3200
BsmFI	GGGAC	3 cut(s)	1209, 2344, 3093
BsmI	GAATGC	3 cut(s)	1293, 1926, 2985
BsnI	GGCC	9 cut(s)	266, 574, 1058, 1512, 1617, 2187, 2349, 2532, 2768
Bso31I	GGTCTC	1 cut(s)	3200
Bsp119I	TTCGAA	1 cut(s)	2977
Bsp1286I	GDGCHC	3 cut(s)	133, 1137, 1440
Bsp1407I	TGTACA	4 cut(s)	1953, 2166, 2436, 3171
Bsp143I	GATC	8 cut(s)	862, 1332, 1590, 2326, 2448, 2575, 2860, 2965
BspACI	CCGC	2 cut(s)	2676, 2734
BspANI	GGCC	9 cut(s)	266, 574, 1058, 1512, 1617, 2187, 2349, 2532, 2768
BspCNI	CTCAG	7 cut(s)	72, 164, 1179, 1963, 2270, 2605, 2893
BspDI	ATCGAT	1 cut(s)	1331
BspFNI	CGCG	1 cut(s)	2736
BspHI	TCATGA	1 cut(s)	2655
BspLI	GGNNCC	3 cut(s)	79, 1676, 2348
BspMAI	CTGCAG	1 cut(s)	1690
BspT104I	TTCGAA	1 cut(s)	2977
BspTNI	GGTCTC	1 cut(s)	3200
BsrDI	GCAATG	2 cut(s)	2895, 3366
BsrGI	TGTACA	4 cut(s)	1953, 2166, 2436, 3171
BsrI	ACTGG	3 cut(s)	248, 287, 1450
BssECI	CCNNGG	2 cut(s)	1062, 1678
BssMI	GATC	8 cut(s)	862, 1332, 1590, 2326, 2448, 2575, 2860, 2965
BssNAI	GTATAC	4 cut(s)	585, 1326, 1859, 2790
BssT1I	CCWWGG	2 cut(s)	1062, 1678
Bst1107I	GTATAC	4 cut(s)	585, 1326, 1859, 2790
Bst2UI	CCWGG	3 cut(s)	300, 382, 1400
Bst4CI	ACNGT	6 cut(s)	938, 1223, 1500, 1948, 2063, 2715
Bst6I	CTCTTC	3 cut(s)	2226, 3228, 3264
BstAUI	TGTACA	4 cut(s)	1953, 2166, 2436, 3171
BstBAI	YACGTR	2 cut(s)	1008, 2058
BstBI	TTCGAA	1 cut(s)	2977
BstC8I	GCNNGC	6 cut(s)	663, 1247, 1510, 2425, 2925, 2972
BstENI	CCTNNNNNAGG	1 cut(s)	3050
BstFNI	CGCG	1 cut(s)	2736
BstH2I	RGCGCY	1 cut(s)	1686
BstHHI	GCGC	2 cut(s)	1685, 2738
BstKTI	GATC	8 cut(s)	865, 1335, 1593, 2329, 2451, 2578, 2863, 2968
BstMAI	GTCTC	3 cut(s)	533, 1967, 3200
BstMBI	GATC	8 cut(s)	862, 1332, 1590, 2326, 2448, 2575, 2860, 2965
BstMWI	GCNNNNNNNGC	9 cut(s)	471, 611, 1514, 1566, 1790, 2735, 2906, 2980, 3047
BstNI	CCWGG	3 cut(s)	300, 382, 1400
BstNSI	RCATGY	7 cut(s)	913, 1478, 1641, 1980, 2427, 2484, 2974
BstSCI	CCNGG	4 cut(s)	298, 380, 1398, 1670
BstSFI	CTRYAG	3 cut(s)	192, 534, 1686
BstSNI	TACGTA	2 cut(s)	1008, 2058
BstUI	CGCG	1 cut(s)	2736
BstV1I	GCAGC	8 cut(s)	857, 1672, 1725, 2092, 2200, 3094, 3145, 3220
BstV2I	GAAGAC	1 cut(s)	2741
BstX2I	RGATCY	1 cut(s)	1590
BstYI	RGATCY	1 cut(s)	1590
BstZ17I	GTATAC	4 cut(s)	585, 1326, 1859, 2790
Bsu15I	ATCGAT	1 cut(s)	1331
Bsu36I	CCTNAGG	3 cut(s)	151, 1786, 2208
BsuI	GTATCC	3 cut(s)	442, 2285, 2390
BsuRI	GGCC	9 cut(s)	266, 574, 1058, 1512, 1617, 2187, 2349, 2532, 2768
BsuTUI	ATCGAT	1 cut(s)	1331
BtgZI	GCGATG	3 cut(s)	1794, 2036, 2966
BtsI	GCAGTG	2 cut(s)	1620, 3335
BtsIMutI	CAGTG	5 cut(s)	209, 255, 1440, 1620, 3335
Cac8I	GCNNGC	6 cut(s)	663, 1247, 1510, 2425, 2925, 2972
CciI	TCATGA	1 cut(s)	2655
CfoI	GCGC	2 cut(s)	1685, 2738
Cfr13I	GGNCC	3 cut(s)	619, 1396, 2347
ClaI	ATCGAT	1 cut(s)	1331
DpnI	GATC	8 cut(s)	864, 1334, 1592, 2328, 2450, 2577, 2862, 2967
DpnII	GATC	8 cut(s)	862, 1332, 1590, 2326, 2448, 2575, 2860, 2965
DraI	TTTAAA	1 cut(s)	1233
DraIII	CACNNNGTG	1 cut(s)	1664
EaeI	YGGCCR	4 cut(s)	1056, 1615, 2530, 2766
Eam1104I	CTCTTC	3 cut(s)	2226, 3228, 3264
EarI	CTCTTC	3 cut(s)	2226, 3228, 3264
Ecl136II	GAGCTC	1 cut(s)	131
Eco105I	TACGTA	2 cut(s)	1008, 2058
Eco130I	CCWWGG	2 cut(s)	1062, 1678
Eco24I	GRGCYC	2 cut(s)	133, 1137
Eco31I	GGTCTC	1 cut(s)	3200
Eco32I	GATATC	1 cut(s)	3306
Eco47I	GGWCC	2 cut(s)	619, 1396
Eco53kI	GAGCTC	1 cut(s)	131
Eco57I	CTGAAG	2 cut(s)	103, 462
Eco81I	CCTNAGG	3 cut(s)	151, 1786, 2208
EcoICRI	GAGCTC	1 cut(s)	131
EcoNI	CCTNNNNNAGG	1 cut(s)	3050
EcoRII	CCWGG	3 cut(s)	298, 380, 1398
EcoRV	GATATC	1 cut(s)	3306
EcoT14I	CCWWGG	2 cut(s)	1062, 1678
EcoT22I	ATGCAT	1 cut(s)	3024
EcoT38I	GRGCYC	2 cut(s)	133, 1137
ErhI	CCWWGG	2 cut(s)	1062, 1678
FalI	AAGNNNNNCTT	6 cut(s)	717, 749, 1261, 1293, 3030, 3062
FaqI	GGGAC	3 cut(s)	1209, 2344, 3093
FauNDI	CATATG	2 cut(s)	867, 1707
FbaI	TGATCA	2 cut(s)	862, 2448
FblI	GTMKAC	4 cut(s)	584, 1325, 1858, 2789
Fnu4HI	GCNGC	8 cut(s)	846, 1686, 1714, 2106, 2214, 3108, 3159, 3234
FriOI	GRGCYC	2 cut(s)	133, 1137
Fsp4HI	GCNGC	8 cut(s)	846, 1686, 1714, 2106, 2214, 3108, 3159, 3234
FspBI	CTAG	7 cut(s)	357, 363, 602, 744, 1836, 2177, 2645
GlaI	GCGC	2 cut(s)	1684, 2737
GluI	GCNGC	8 cut(s)	846, 1686, 1714, 2106, 2214, 3108, 3159, 3234
GsaI	CCCAGC	2 cut(s)	1464, 2079
HaeII	RGCGCY	1 cut(s)	1686
HaeIII	GGCC	9 cut(s)	266, 574, 1058, 1512, 1617, 2187, 2349, 2532, 2768
HapII	CCGG	1 cut(s)	1671
HhaI	GCGC	2 cut(s)	1685, 2738
Hin6I	GCGC	2 cut(s)	1683, 2736
HinP1I	GCGC	2 cut(s)	1683, 2736
HindIII	AAGCTT	2 cut(s)	731, 1151
HpaII	CCGG	1 cut(s)	1671
HphI	GGTGA	4 cut(s)	1089, 1823, 3158, 3278
Hpy188III	TCNNGA	6 cut(s)	1415, 2015, 2194, 2656, 2963, 3309
Hpy99I	CGWCG	1 cut(s)	580
HpyCH4III	ACNGT	6 cut(s)	938, 1223, 1500, 1948, 2063, 2715
HpyCH4IV	ACGT	3 cut(s)	1007, 2057, 3215
HpyF10VI	GCNNNNNNNGC	9 cut(s)	471, 611, 1514, 1566, 1790, 2735, 2906, 2980, 3047
HpySE526I	ACGT	3 cut(s)	1007, 2057, 3215
HspAI	GCGC	2 cut(s)	1683, 2736
Ksp22I	TGATCA	2 cut(s)	862, 2448
Kzo9I	GATC	8 cut(s)	862, 1332, 1590, 2326, 2448, 2575, 2860, 2965
LmnI	GCTCC	3 cut(s)	1790, 2696, 2843
Lsp1109I	GCAGC	8 cut(s)	857, 1672, 1725, 2092, 2200, 3094, 3145, 3220
LweI	GCATC	6 cut(s)	641, 1771, 2008, 2747, 2943, 3009
MaeI	CTAG	7 cut(s)	357, 363, 602, 744, 1836, 2177, 2645
MaeII	ACGT	3 cut(s)	1007, 2057, 3215
MalI	GATC	8 cut(s)	864, 1334, 1592, 2328, 2450, 2577, 2862, 2967
MboI	GATC	8 cut(s)	862, 1332, 1590, 2326, 2448, 2575, 2860, 2965
MfeI	CAATTG	3 cut(s)	407, 814, 3347
MflI	RGATCY	1 cut(s)	1590
MhlI	GDGCHC	3 cut(s)	133, 1137, 1440
MlsI	TGGCCA	4 cut(s)	1058, 1617, 2532, 2768
MluNI	TGGCCA	4 cut(s)	1058, 1617, 2532, 2768
MlyI	GAGTC	6 cut(s)	215, 368, 413, 1164, 2009, 2519
MmeI	TCCRAC	1 cut(s)	3017
Mox20I	TGGCCA	4 cut(s)	1058, 1617, 2532, 2768
Mph1103I	ATGCAT	1 cut(s)	3024
MroXI	GAANNNNTTC	1 cut(s)	275
MscI	TGGCCA	4 cut(s)	1058, 1617, 2532, 2768
MslI	CAYNNNNRTG	2 cut(s)	637, 3087
Msp20I	TGGCCA	4 cut(s)	1058, 1617, 2532, 2768
MspI	CCGG	1 cut(s)	1671
MspR9I	CCNGG	4 cut(s)	300, 382, 1400, 1672
MunI	CAATTG	3 cut(s)	407, 814, 3347
Mva1269I	GAATGC	3 cut(s)	1293, 1926, 2985
MvaI	CCWGG	3 cut(s)	300, 382, 1400
MvnI	CGCG	1 cut(s)	2736
MwoI	GCNNNNNNNGC	9 cut(s)	471, 611, 1514, 1566, 1790, 2735, 2906, 2980, 3047
NciI	CCSGG	1 cut(s)	1672
NdeI	CATATG	2 cut(s)	867, 1707
NdeII	GATC	8 cut(s)	862, 1332, 1590, 2326, 2448, 2575, 2860, 2965
NlaIV	GGNNCC	3 cut(s)	79, 1676, 2348
NmuCI	GTSAC	4 cut(s)	207, 2483, 2881, 2891
NsiI	ATGCAT	1 cut(s)	3024
NspI	RCATGY	7 cut(s)	913, 1478, 1641, 1980, 2427, 2484, 2974
NspV	TTCGAA	1 cut(s)	2977
PaeI	GCATGC	2 cut(s)	2427, 2974
PagI	TCATGA	1 cut(s)	2655
PciI	ACATGT	3 cut(s)	1474, 1637, 2480
PcsI	WCGNNNNNNNCGW	1 cut(s)	2974
PctI	GAATGC	3 cut(s)	1293, 1926, 2985
PdmI	GAANNNNTTC	1 cut(s)	275
PfeI	GAWTC	6 cut(s)	598, 1370, 1411, 1449, 1606, 2659
PflMI	CCANNNNNTGG	1 cut(s)	254
PfoI	TCCNGGA	1 cut(s)	1398
PkrI	GCNGC	8 cut(s)	847, 1687, 1715, 2107, 2215, 3109, 3160, 3235
PleI	GAGTC	6 cut(s)	214, 368, 413, 1164, 2008, 2518
PpsI	GAGTC	6 cut(s)	214, 368, 413, 1164, 2008, 2518
Ppu21I	YACGTR	2 cut(s)	1008, 2058
PscI	ACATGT	3 cut(s)	1474, 1637, 2480
PshBI	ATTAAT	2 cut(s)	1023, 2811
PsiI	TTATAA	2 cut(s)	801, 1116
Psp124BI	GAGCTC	1 cut(s)	133
Psp6I	CCWGG	3 cut(s)	298, 380, 1398
PspFI	CCCAGC	2 cut(s)	1460, 2075
PspGI	CCWGG	3 cut(s)	298, 380, 1398
PspN4I	GGNNCC	3 cut(s)	79, 1676, 2348
PspPI	GGNCC	3 cut(s)	619, 1396, 2347
PstI	CTGCAG	1 cut(s)	1690
PsuI	RGATCY	1 cut(s)	1590
RseI	CAYNNNNRTG	2 cut(s)	637, 3087
SacI	GAGCTC	1 cut(s)	133
SatI	GCNGC	8 cut(s)	846, 1686, 1714, 2106, 2214, 3108, 3159, 3234
Sau3AI	GATC	8 cut(s)	862, 1332, 1590, 2326, 2448, 2575, 2860, 2965
Sau96I	GGNCC	3 cut(s)	619, 1396, 2347
ScaI	AGTACT	2 cut(s)	691, 1276
SchI	GAGTC	6 cut(s)	215, 368, 413, 1164, 2009, 2519
ScrFI	CCNGG	4 cut(s)	300, 382, 1400, 1672
SduI	GDGCHC	3 cut(s)	133, 1137, 1440
SfaNI	GCATC	6 cut(s)	641, 1771, 2008, 2747, 2943, 3009
SfcI	CTRYAG	3 cut(s)	192, 534, 1686
SfuI	TTCGAA	1 cut(s)	2977
SinI	GGWCC	2 cut(s)	619, 1396
SmiMI	CAYNNNNRTG	2 cut(s)	637, 3087
SmlI	CTYRAG	2 cut(s)	508, 2296
SmoI	CTYRAG	2 cut(s)	508, 2296
SnaBI	TACGTA	2 cut(s)	1008, 2058
SphI	GCATGC	2 cut(s)	2427, 2974
SsiI	CCGC	2 cut(s)	2676, 2734
SspMI	CTAG	7 cut(s)	357, 363, 602, 744, 1836, 2177, 2645
SstI	GAGCTC	1 cut(s)	133
StyD4I	CCNGG	4 cut(s)	298, 380, 1398, 1670
StyI	CCWWGG	2 cut(s)	1062, 1678
TaaI	ACNGT	6 cut(s)	938, 1223, 1500, 1948, 2063, 2715
TaiI	ACGT	3 cut(s)	1010, 2060, 3218
TaqI	TCGA	4 cut(s)	422, 1331, 2977, 3099
TaqII	GACCGA	1 cut(s)	213
TatI	WGTACW	7 cut(s)	689, 1274, 1953, 2166, 2253, 2436, 3171
TfiI	GAWTC	6 cut(s)	598, 1370, 1411, 1449, 1606, 2659
TscAI	CASTG	5 cut(s)	216, 255, 1440, 1627, 3342
TseFI	GTSAC	4 cut(s)	207, 2483, 2881, 2891
TseI	GCWGC	8 cut(s)	845, 1685, 1713, 2105, 2213, 3107, 3158, 3233
Tsp45I	GTSAC	4 cut(s)	207, 2483, 2881, 2891
TspRI	CASTG	5 cut(s)	216, 255, 1440, 1627, 3342
Van91I	CCANNNNNTGG	1 cut(s)	254
VpaK11BI	GGWCC	2 cut(s)	619, 1396
VspI	ATTAAT	2 cut(s)	1023, 2811
XagI	CCTNNNNNAGG	1 cut(s)	3050
XapI	RAATTY	7 cut(s)	36, 272, 1904, 1990, 2142, 2721, 3313
XceI	RCATGY	7 cut(s)	913, 1478, 1641, 1980, 2427, 2484, 2974
XcmI	CCANNNNNNNNNTGG	1 cut(s)	388
XmiI	GTMKAC	4 cut(s)	584, 1325, 1858, 2789
XmnI	GAANNNNTTC	1 cut(s)	275
XspI	CTAG	7 cut(s)	357, 363, 602, 744, 1836, 2177, 2645
ZrmI	AGTACT	2 cut(s)	691, 1276
Zsp2I	ATGCAT	1 cut(s)	3024

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.