Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0012309

Physical Location & Seq

Genomic Coordinates Reverse (-)

35854711 .. 35859762

Gene Structure 5052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g42930.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3387 bp

ATGTTGCCTTCGAAGACTAAACAACTCTGCCAAATTTCCCACACAATTTCAAAGTTCAGAGCTTTTCAGGCTGGTCCCTCTCATAATGTCAGAAGCAATCTCAAAGAAAATGGGTTCAGAAACAGAGCTCAAACCTCAGGTTCAGAAATGGAGAAAAGCATATACTCGATTCTCACTATAGACCGATGGGAGTCACTGAACCACATGGAGTACAGGTTGGCTTCTCTGAGACCAGTGCATGGAAGATTGGCCCTGAAATTCTTCAACTGGGTAATTCAACAGCCTGGTTTGGAACTCAATCATCTCACTCATGTACTCTCTGTTACAACTCATATACTTGCTAGAGCTAGAATGTATGACTCTGCCAGGTTGATTTTGGGTCATTTAGCACAAATGGGTGTTGGTTCGAAGTCCGTTTTTGATGCTTTGATGGATACTTACCCTCTTTGCAATTCCAACCCTTCAGTATTTGACCTTCTGATTAGAGTTTACTTGAAGGAAGGGATGGTTGGTAGTGCTGTAGAGACTTTTTATTTGATGGGTTTAAGGGGGTTTAGGCCGTCGGGTTGTACTTGTAATATGATCCTAGCTTCGCTGGCAAAGGACCGGAGGGCTGCATCGGTATGGTCTTTTTTCAAAGAAATGCTGGCTAAGAATGTTTGCCCTGATGTTAGTACTTTTAATATATTGATTAGTGTCTTATGTGTTGAAGGAAAGCTTAGTAAAGCTAGTTATCTTTTGAGGAAGATGGAAAAGAGTGGTTATGTTCCTAATGTAGTTACTTACAATACTTTGCTCAATTGGTACTGCAAGAAGGGGAGGTATAAAGCAGCTTTTGAGCTTATTGATCTTATGGGTTCTAAGGGTATTGAAGCAGATGTTTGTACATATAACATGCTTATTGAGGATTTGTGTAGAAACAGTAGTAGTGCAAAAGGTTATTTACTGTTGAAGAAGATGAGAAGGAAGAAGTTATCTCCTAGTGAGGTTACATACAATATCCTTATTAATGGGTTTGTCAAGGAGGGGAAGATTGGTGTTGCTACCAAGGTTTTTGATGAGATGTCAAAGTTTGATCTTTCACCAAATTGTGTTACTTATAATGCTCTGATTGACGGGCTCTGTCAGAAGGGTAAGCTTGAAGAAGCTTTCAGACTCTTGGACATGATGGAAGCAGTGGGACTAAGACCTAATGAAGTCAGCTATGGTGCTGTTTTAAACGGGCTGTGCAAGCATGGTAAGTTTGACTTAGCAAGAAGTACTTTGCAGAGAGTGCGACTGAATGGGATTGGTAGTGGTTGCGTTATGTATACATCATTCATGGATGGGTTATGCAAAAATGGTTTGCTTGATGAAGCCGTGCATTTTCTTAATGTGATGATCCAGGATGGTGTGAATCCTGATATTGTAGCATTTTCAGTGCTCATAAATGGATTATGCAGAGCTGGGAGGATGAAACATGTGGGAGAGATAATGTGTAAACTATATAGAGCTGGCCTTGCCCCCAATAAAATAATATATTCTACCTTAATCTACAACTGTTGCAAGATGGGCAACGTAATGGAAGCATTAAAGATCTATGCAGTTATGAATCGTAATGGCCACAGTGCCGACCATTTCATATGTAACATATTGGTTACTGCGCTTTGTGAAGCTGGGAATCTTGGTGCTGCAGAAAATTTCATGCGTCATATGAGCAGCATGGGTCTGGTTGCTAGTTCCATTTCTTTTGATTGTATGATAAATGGGTATGCAAACATGGGTAATGCGTTAGGAGCATTTTCTGTGTTTGATGAAATGATTGAATTAGGTCATCACCCAAGTCCATTTACTTATGGCAGTATACTGAAAGGGCTATGCCAGGGTGGTCATTTGGAGGAGGCAAGGAATTTTTTGAAGAAACTCCACAGCATTCCATATGCTGTTGATACTGTTGTGTACAATACAATTCTTTCTGAGACATGTAAGTCTGGGAATTTGCATGAGGCTGTTGTCCTTCTTGATCAGATGGTTGAGAATAATGTCTTGCCCGATACACATACGTACAGTAGCCTTCTTGCTGGGTTATGCAGGAAGGGAAAAATGGTTACTGCCATCCTGTTGTTTGGAAGAGTGATGGAAAAAGGGATTTTATCACCGAATGCCATAATGTACACCTGTCTAGTTGATGGCCTTTTCAAGATTGGCCAATCTAAGGCCGCTTCATATCTGTTTGAAGAGATGGAGAACAAAGGTCTGAACTCGGATACTACTGCTCTTAATGTAATGATGGATGGATACTCGAGGATGGGAAAAATGATGAAGGCAAATGATCTCTTTTCAAGTATGGGTAGCCGAAAATTATTCCCTAATTTGGCTTCATATAACATTCTCTTGCATGGATACTCAAAGAAAGAAGATTTATTGGCATGCTCTATGGTGTACAAAAACCTGATCAGGATCAAATTATTGCCCGACAGACTGACATGTCACTCTCTTATTCTTGGATTATGTGAGTCAGGTAAGGTGGATATTGGCCACAAAATGTTGCATAAGATGATTATAGAAGGTGCTGTACCTGATCTTTTAACATTCAATTTGCTTATCAGCAAGTATTCTGAGATTGGGAAGATGGGGATGGCATTTGAACTAGTTAGTGTCATGAATCTGTTAGGAGTTTCTGCTAATACAGACACCCATGATGCAATCTTGAACGGACTGTTCAGAAGTTTAGCTTTCCGAGCATCCCGAAGTCTTCTGTATGAAATGTTGGCCAAAGGTTATACTCCAAAGTATACACATTATTTCACTATAATTAATGGTATGTGTAGAGTGGGAGATATAAAAGGAGCATTTGAACTAAAAGATCAGATGGAAGCTCTTGGTGTCACTTCCCGTGACATTGCTGAGAGTGCTATGGTTAGAGGGCTTGCGAAATGTGGGAAGGTTGAAGAAGCGATGCTGGTTCTGGATCACATGCTTCGAATGCAACTTGTTCCAACAACTGCTACTTTTACTACTTTGATGCACAAGTTCTGCAAAGAAGCCAACCTTGCAGAGGCTCTAAAATTGAGGGGTGTGATGGAACATTGTGGTGTGCCACTTGATGTTACTGCTTTTAATGTTCTCATTTCAGGCTTTTGTGCTAATGGTGATGTTGCGGCTGCATTTGAGCTGTACAAGGAGATGAAACAAAGTGGTCTCTTTCCCAACACAACAACATACACTCTTCTCCTTGCTGCTGTATTCTCTGGTAATAATCTTATTGAAGGTGAAGAGATTTTTGTAGATCTATTGGAGAGGGGGTTGATATGTGGAAATTTGGATGGAAGGACCTTAACACTGCATGAGCAGTTGAATGTTGCAATGGGAACATTAAACTCCTGGAGTTGCAATAAATGGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

1129

Amino Acids

125.02

Weight (kDa)

8.77

Isoelectric Point (pI)

31.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	190 - 235	4.2e-10	PPR repeat family
PPR_long	PF17177	203 - 337	1.4e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	212 - 270	1.1e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	218 - 251	1.3e-09	PPR repeat
PPR_2	PF13041	222 - 267	6.3e-13	PPR repeat family
TPR_24	PF23276	243 - 354	1.9e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	254 - 285	7e-11	PPR repeat
PPR_3	PF13812	257 - 302	1.7e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	257 - 306	2.7e-18	PPR repeat family
PPR	PF01535	260 - 290	1.5e-07	PPR repeat
PPR_long	PF17177	278 - 425	4.2e-11	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	282 - 341	1e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	293 - 341	3.4e-12	PPR repeat family
PPR_3	PF13812	316 - 372	2.2e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	324 - 356	1.3e-09	PPR repeat
PPR_2	PF13041	327 - 376	2.9e-17	PPR repeat family
PPR	PF01535	330 - 358	2.2e-06	PPR repeat
TPR_24	PF23276	342 - 399	9.9e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	350 - 407	4.3e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	359 - 391	1.2e-14	PPR repeat
PPR_2	PF13041	362 - 411	8e-17	PPR repeat family
PPR	PF01535	365 - 394	8.2e-09	PPR repeat
PPR_1	PF12854	434 - 460	9.2e-07	PPR repeat
PPR	PF01535	435 - 465	2e-06	PPR repeat
PPR_2	PF13041	435 - 481	9.6e-13	PPR repeat family
PPR_1	PF12854	463 - 486	1.7e-06	PPR repeat
PPR_1	PF12854	499 - 530	7e-06	PPR repeat
PPR_long	PF17177	509 - 651	7.5e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	538 - 586	2.2e-06	PPR repeat family
TPR_24	PF23276	541 - 666	8.6e-09	Fungal tetratrico peptide repeats
PPR_2	PF13041	573 - 621	1.4e-10	PPR repeat family
PPR_1	PF12854	643 - 671	3e-07	PPR repeat
PPR_2	PF13041	643 - 691	2.2e-15	PPR repeat family
PPR_1	PF12854	674 - 702	4e-06	PPR repeat
PPR_2	PF13041	713 - 750	8.9e-06	PPR repeat family
PPR_2	PF13041	749 - 797	2.9e-11	PPR repeat family
PPR_2	PF13041	853 - 901	1.4e-06	PPR repeat family
PPR_long	PF17177	873 - 1009	2.2e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	927 - 952	7.2e-06	PPR repeat
TPR_24	PF23276	964 - 1056	8.5e-08	Fungal tetratrico peptide repeats
PPR_2	PF13041	965 - 1007	9.8e-08	PPR repeat family
PPR_2	PF13041	993 - 1041	4.2e-09	PPR repeat family
PPR_3	PF13812	1021 - 1074	1.7e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	1025 - 1057	3.5e-08	PPR repeat
PPR_2	PF13041	1029 - 1074	8.3e-15	PPR repeat family
PPR	PF01535	1032 - 1061	2.3e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55840 AT5G55840 AT5G55840
fragaria_vesca	FvH4_3g42930
malus_domestica	MD03G1028500.v1.1
prunus_persica	Prupe.6G024500_v2.0.a1 Prupe.6G024500_v2.0.a1
pyrus_communis	pycom03g02310
rosa_chinensis	RchiOBHm_Chr5g0076971
rosa_laevigata	RLG00000036637
rosa_multiflora	Rmu_sc0004655.1_g000020
rosa_roxburghii	Rroxscaffold_1G00005180
rosa_rugosa	Rorug05G0449800 Rorug05G0449900
rosa_samantha	Rh5AG504500 Rh5BG526200 Rh5CG550100 Rh5DG538400
rosa_wichuraiana	Rw5G047180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1101
AasI	GACNNNNNNGTC	2 cut(s)	1966, 2466
AccB7I	CCANNNNNTGG	1 cut(s)	239
AccI	GTMKAC	3 cut(s)	1310, 1843, 2774
AciI	CCGC	2 cut(s)	2199, 3140
AclWI	GGATC	4 cut(s)	577, 1375, 2447, 2958
AcoI	YGGCCR	4 cut(s)	1600, 2185, 2515, 2751
AcsI	RAATTY	6 cut(s)	33, 257, 1678, 1888, 1975, 3298
AcuI	CTGAAG	1 cut(s)	447
AfiI	CCNNNNNNNGG	4 cut(s)	239, 2194, 2353, 3037
AflIII	ACRYGT	3 cut(s)	1459, 1961, 2465
AhlI	ACTAGT	1 cut(s)	2629
AjnI	CCWGG	5 cut(s)	283, 365, 1383, 1860, 3362
AjuI	GAANNNNNNNTTGG	2 cut(s)	492, 524
Alw21I	GWGCWC	2 cut(s)	130, 1425
Alw26I	GTCTC	4 cut(s)	223, 518, 1952, 3185
AlwI	GGATC	4 cut(s)	577, 1375, 2447, 2958
Ama87I	CYCGRG	1 cut(s)	2281
AoxI	GGCC	9 cut(s)	249, 557, 1495, 1600, 2170, 2185, 2196, 2515, 2751
ApeKI	GCWGC	6 cut(s)	614, 830, 1670, 1698, 3143, 3218
ApoI	RAATTY	6 cut(s)	33, 257, 1678, 1888, 1975, 3298
ArsI	GACNNNNNNTTYG	2 cut(s)	517, 549
AseI	ATTAAT	2 cut(s)	1008, 2796
Asp700I	GAANNNNTTC	1 cut(s)	260
AspLEI	GCGC	1 cut(s)	1645
AspS9I	GGNCC	4 cut(s)	74, 250, 604, 3312
AsuHPI	GGTGA	5 cut(s)	1074, 1808, 2127, 3143, 3263
AsuII	TTCGAA	3 cut(s)	11, 407, 2962
AvaI	CYCGRG	1 cut(s)	2281
AvaII	GGWCC	3 cut(s)	74, 604, 3312
AxyI	CCTNAGG	1 cut(s)	136
BaeI	ACNNNNGTAYC	2 cut(s)	1920, 1953
BalI	TGGCCA	4 cut(s)	1602, 2187, 2517, 2753
BanII	GRGCYC	2 cut(s)	130, 1122
BarI	GAAGNNNNNNTAC	4 cut(s)	459, 491, 2538, 2570
BbsI	GAAGAC	2 cut(s)	20, 2726
Bbv12I	GWGCWC	2 cut(s)	130, 1425
BbvI	GCAGC	6 cut(s)	601, 842, 1657, 1710, 3130, 3205
BceAI	ACGGC	2 cut(s)	544, 1343
BciT130I	CCWGG	5 cut(s)	285, 367, 1385, 1862, 3364
BciVI	GTATCC	4 cut(s)	427, 2239, 2270, 2375
BclI	TGATCA	2 cut(s)	2002, 2433
BcoDI	GTCTC	4 cut(s)	223, 518, 1952, 3185
BcuI	ACTAGT	1 cut(s)	2629
BfaI	CTAG	8 cut(s)	342, 348, 587, 729, 981, 1716, 2162, 2630
BfmI	CTRYAG	3 cut(s)	177, 519, 1671
BfuI	GTATCC	4 cut(s)	427, 2239, 2270, 2375
BglII	AGATCT	2 cut(s)	1575, 3268
BisI	GCNGC	8 cut(s)	615, 831, 1671, 1699, 2199, 3141, 3144, 3219
BlsI	GCNGC	8 cut(s)	616, 832, 1672, 1700, 2200, 3142, 3145, 3220
BmcAI	AGTACT	2 cut(s)	676, 1261
Bme1390I	CCNGG	5 cut(s)	285, 367, 1385, 1862, 3364
Bme18I	GGWCC	3 cut(s)	74, 604, 3312
BmeT110I	CYCGRG	1 cut(s)	2281
BmgT120I	GGNCC	4 cut(s)	74, 250, 604, 3312
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	5 cut(s)	285, 367, 1385, 1862, 3364
BmrI	ACTGGG	1 cut(s)	277
BmsI	GCATC	6 cut(s)	412, 626, 2671, 2732, 2928, 2994
BmuI	ACTGGG	1 cut(s)	277
BpiI	GAAGAC	2 cut(s)	20, 2726
BpmI	CTGGAG	1 cut(s)	3385
Bpu14I	TTCGAA	3 cut(s)	11, 407, 2962
BsaAI	YACGTR	1 cut(s)	2043
BsaBI	GATNNNNATC	1 cut(s)	2438
BsaI	GGTCTC	2 cut(s)	223, 3185
BsaJI	CCNNGG	2 cut(s)	1047, 1861
BsaWI	WCCGGW	1 cut(s)	606
BsaXI	ACNNNNNCTCC	4 cut(s)	200, 230, 3269, 3299
Bsc4I	CCNNNNNNNGG	4 cut(s)	239, 2194, 2353, 3037
Bse1I	ACTGG	2 cut(s)	233, 272
Bse21I	CCTNAGG	1 cut(s)	136
Bse3DI	GCAATG	2 cut(s)	2880, 3351
Bse8I	GATNNNNATC	1 cut(s)	2438
BseBI	CCWGG	5 cut(s)	285, 367, 1385, 1862, 3364
BseDI	CCNNGG	2 cut(s)	1047, 1861
BseJI	GATNNNNATC	1 cut(s)	2438
BseLI	CCNNNNNNNGG	4 cut(s)	239, 2194, 2353, 3037
BseMI	GCAATG	2 cut(s)	2880, 3351
BseMII	CTCAG	5 cut(s)	150, 218, 1947, 2589, 2877
BseNI	ACTGG	2 cut(s)	233, 272
BseRI	GAGGAG	1 cut(s)	1892
BseXI	GCAGC	6 cut(s)	601, 842, 1657, 1710, 3130, 3205
BseYI	CCCAGC	3 cut(s)	1445, 1655, 2060
BshFI	GGCC	9 cut(s)	251, 559, 1497, 1602, 2172, 2187, 2198, 2517, 2753
BsiHKAI	GWGCWC	2 cut(s)	130, 1425
BsiHKCI	CYCGRG	1 cut(s)	2281
BsiSI	CCGG	1 cut(s)	607
BslFI	GGGAC	2 cut(s)	60, 1194
BslI	CCNNNNNNNGG	4 cut(s)	239, 2194, 2353, 3037
BsmAI	GTCTC	4 cut(s)	223, 518, 1952, 3185
BsmFI	GGGAC	2 cut(s)	60, 1194
BsmI	GAATGC	3 cut(s)	1911, 2146, 2970
BsnI	GGCC	9 cut(s)	251, 559, 1497, 1602, 2172, 2187, 2198, 2517, 2753
Bso31I	GGTCTC	2 cut(s)	223, 3185
BsoBI	CYCGRG	1 cut(s)	2281
Bsp119I	TTCGAA	3 cut(s)	11, 407, 2962
Bsp1286I	GDGCHC	3 cut(s)	130, 1122, 1425
Bsp1407I	TGTACA	5 cut(s)	884, 1938, 2151, 2421, 3156
BspACI	CCGC	2 cut(s)	2199, 3140
BspANI	GGCC	9 cut(s)	251, 559, 1497, 1602, 2172, 2187, 2198, 2517, 2753
BspCNI	CTCAG	5 cut(s)	149, 219, 1948, 2590, 2878
BspHI	TCATGA	1 cut(s)	2640
BspLI	GGNNCC	1 cut(s)	76
BspMAI	CTGCAG	1 cut(s)	1675
BspPI	GGATC	4 cut(s)	577, 1375, 2447, 2958
BspT104I	TTCGAA	3 cut(s)	11, 407, 2962
BspTNI	GGTCTC	2 cut(s)	223, 3185
BsrDI	GCAATG	2 cut(s)	2880, 3351
BsrGI	TGTACA	5 cut(s)	884, 1938, 2151, 2421, 3156
BsrI	ACTGG	2 cut(s)	233, 272
BssECI	CCNNGG	2 cut(s)	1047, 1861
BssNAI	GTATAC	3 cut(s)	1311, 1844, 2775
BssT1I	CCWWGG	1 cut(s)	1047
Bst1107I	GTATAC	3 cut(s)	1311, 1844, 2775
Bst2UI	CCWGG	5 cut(s)	285, 367, 1385, 1862, 3364
Bst4CI	ACNGT	7 cut(s)	923, 948, 1541, 1607, 1933, 2048, 2700
Bst6I	CTCTTC	4 cut(s)	2104, 2211, 3213, 3249
BstAPI	GCANNNNNTGC	1 cut(s)	1273
BstAUI	TGTACA	5 cut(s)	884, 1938, 2151, 2421, 3156
BstBAI	YACGTR	1 cut(s)	2043
BstBI	TTCGAA	3 cut(s)	11, 407, 2962
BstC8I	GCNNGC	6 cut(s)	597, 648, 1232, 1495, 2410, 2910
BstENI	CCTNNNNNAGG	1 cut(s)	3035
BstHHI	GCGC	1 cut(s)	1645
BstMAI	GTCTC	4 cut(s)	223, 518, 1952, 3185
BstNI	CCWGG	5 cut(s)	285, 367, 1385, 1862, 3364
BstNSI	RCATGY	6 cut(s)	898, 1463, 1965, 2412, 2469, 2959
BstSCI	CCNGG	5 cut(s)	283, 365, 1383, 1860, 3362
BstSFI	CTRYAG	3 cut(s)	177, 519, 1671
BstSNI	TACGTA	1 cut(s)	2043
BstV1I	GCAGC	6 cut(s)	601, 842, 1657, 1710, 3130, 3205
BstV2I	GAAGAC	2 cut(s)	20, 2726
BstX2I	RGATCY	2 cut(s)	1575, 3268
BstYI	RGATCY	2 cut(s)	1575, 3268
BstZ17I	GTATAC	3 cut(s)	1311, 1844, 2775
Bsu36I	CCTNAGG	1 cut(s)	136
BsuI	GTATCC	4 cut(s)	427, 2239, 2270, 2375
BsuRI	GGCC	9 cut(s)	251, 559, 1497, 1602, 2172, 2187, 2198, 2517, 2753
BtgZI	GCGATG	1 cut(s)	2951
BtsI	GCAGTG	2 cut(s)	1182, 3320
BtsIMutI	CAGTG	6 cut(s)	194, 240, 1182, 1425, 1612, 3320
Cac8I	GCNNGC	6 cut(s)	597, 648, 1232, 1495, 2410, 2910
CciI	TCATGA	1 cut(s)	2640
CfoI	GCGC	1 cut(s)	1645
Cfr13I	GGNCC	4 cut(s)	74, 250, 604, 3312
CseI	GACGC	1 cut(s)	1676
DraI	TTTAAA	1 cut(s)	1218
DrdI	GACNNNNNNGTC	2 cut(s)	1966, 2466
DseDI	GACNNNNNNGTC	2 cut(s)	1966, 2466
EaeI	YGGCCR	4 cut(s)	1600, 2185, 2515, 2751
Eam1104I	CTCTTC	4 cut(s)	2104, 2211, 3213, 3249
EarI	CTCTTC	4 cut(s)	2104, 2211, 3213, 3249
Ecl136II	GAGCTC	1 cut(s)	128
Eco105I	TACGTA	1 cut(s)	2043
Eco130I	CCWWGG	1 cut(s)	1047
Eco24I	GRGCYC	2 cut(s)	130, 1122
Eco31I	GGTCTC	2 cut(s)	223, 3185
Eco47I	GGWCC	3 cut(s)	74, 604, 3312
Eco53kI	GAGCTC	1 cut(s)	128
Eco57I	CTGAAG	1 cut(s)	447
Eco81I	CCTNAGG	1 cut(s)	136
Eco88I	CYCGRG	1 cut(s)	2281
EcoICRI	GAGCTC	1 cut(s)	128
EcoNI	CCTNNNNNAGG	1 cut(s)	3035
EcoO109I	RGGNCCY	1 cut(s)	3312
EcoRII	CCWGG	5 cut(s)	283, 365, 1383, 1860, 3362
EcoT14I	CCWWGG	1 cut(s)	1047
EcoT38I	GRGCYC	2 cut(s)	130, 1122
ErhI	CCWWGG	1 cut(s)	1047
FaqI	GGGAC	2 cut(s)	60, 1194
FauNDI	CATATG	3 cut(s)	1622, 1692, 1918
FbaI	TGATCA	2 cut(s)	2002, 2433
FblI	GTMKAC	3 cut(s)	1310, 1843, 2774
Fnu4HI	GCNGC	8 cut(s)	615, 831, 1671, 1699, 2199, 3141, 3144, 3219
FriOI	GRGCYC	2 cut(s)	130, 1122
Fsp4HI	GCNGC	8 cut(s)	615, 831, 1671, 1699, 2199, 3141, 3144, 3219
FspBI	CTAG	8 cut(s)	342, 348, 587, 729, 981, 1716, 2162, 2630
GlaI	GCGC	1 cut(s)	1644
GluI	GCNGC	8 cut(s)	615, 831, 1671, 1699, 2199, 3141, 3144, 3219
GsaI	CCCAGC	3 cut(s)	1449, 1659, 2064
GsuI	CTGGAG	1 cut(s)	3385
HaeIII	GGCC	9 cut(s)	251, 559, 1497, 1602, 2172, 2187, 2198, 2517, 2753
HapII	CCGG	1 cut(s)	607
HgaI	GACGC	1 cut(s)	1676
HhaI	GCGC	1 cut(s)	1645
Hin6I	GCGC	1 cut(s)	1643
HinP1I	GCGC	1 cut(s)	1643
HindIII	AAGCTT	3 cut(s)	716, 1136, 1146
HinfI	GANTC	9 cut(s)	169, 191, 359, 1155, 1396, 1591, 1660, 2495, 2644
HpaII	CCGG	1 cut(s)	607
HphI	GGTGA	5 cut(s)	1074, 1808, 2127, 3143, 3263
Hpy166II	GTNNAC	8 cut(s)	490, 1311, 1481, 1844, 1939, 2154, 2422, 2775
Hpy188III	TCNNGA	8 cut(s)	1400, 2000, 2179, 2437, 2641, 2689, 2727, 2948
Hpy8I	GTNNAC	8 cut(s)	490, 1311, 1481, 1844, 1939, 2154, 2422, 2775
Hpy99I	CGWCG	1 cut(s)	565
HpyCH4III	ACNGT	7 cut(s)	923, 948, 1541, 1607, 1933, 2048, 2700
HpyCH4IV	ACGT	2 cut(s)	1557, 2042
HpySE526I	ACGT	2 cut(s)	1557, 2042
HspAI	GCGC	1 cut(s)	1643
Ksp22I	TGATCA	2 cut(s)	2002, 2433
LmnI	GCTCC	2 cut(s)	1775, 2828
Lsp1109I	GCAGC	6 cut(s)	601, 842, 1657, 1710, 3130, 3205
LweI	GCATC	6 cut(s)	412, 626, 2671, 2732, 2928, 2994
MaeI	CTAG	8 cut(s)	342, 348, 587, 729, 981, 1716, 2162, 2630
MaeII	ACGT	2 cut(s)	1557, 2042
MfeI	CAATTG	1 cut(s)	799
MflI	RGATCY	2 cut(s)	1575, 3268
MhlI	GDGCHC	3 cut(s)	130, 1122, 1425
MlsI	TGGCCA	4 cut(s)	1602, 2187, 2517, 2753
MluNI	TGGCCA	4 cut(s)	1602, 2187, 2517, 2753
MlyI	GAGTC	4 cut(s)	200, 353, 1149, 2504
MmeI	TCCRAC	2 cut(s)	480, 3002
Mox20I	TGGCCA	4 cut(s)	1602, 2187, 2517, 2753
MroXI	GAANNNNTTC	1 cut(s)	260
MscI	TGGCCA	4 cut(s)	1602, 2187, 2517, 2753
MslI	CAYNNNNRTG	2 cut(s)	622, 3072
Msp20I	TGGCCA	4 cut(s)	1602, 2187, 2517, 2753
MspI	CCGG	1 cut(s)	607
MspR9I	CCNGG	5 cut(s)	285, 367, 1385, 1862, 3364
MunI	CAATTG	1 cut(s)	799
Mva1269I	GAATGC	3 cut(s)	1911, 2146, 2970
MvaI	CCWGG	5 cut(s)	285, 367, 1385, 1862, 3364
NdeI	CATATG	3 cut(s)	1622, 1692, 1918
NlaIV	GGNNCC	1 cut(s)	76
NmuCI	GTSAC	4 cut(s)	192, 2468, 2866, 2876
NspI	RCATGY	6 cut(s)	898, 1463, 1965, 2412, 2469, 2959
NspV	TTCGAA	3 cut(s)	11, 407, 2962
PaeI	GCATGC	1 cut(s)	2412
PaeR7I	CTCGAG	1 cut(s)	2281
PagI	TCATGA	1 cut(s)	2640
PciI	ACATGT	3 cut(s)	1459, 1961, 2465
PctI	GAATGC	3 cut(s)	1911, 2146, 2970
PdmI	GAANNNNTTC	1 cut(s)	260
PfeI	GAWTC	5 cut(s)	169, 1396, 1591, 1660, 2644
PflMI	CCANNNNNTGG	1 cut(s)	239
PfoI	TCCNGGA	2 cut(s)	1383, 3362
PkrI	GCNGC	8 cut(s)	616, 832, 1672, 1700, 2200, 3142, 3145, 3220
PleI	GAGTC	4 cut(s)	199, 353, 1149, 2503
PpsI	GAGTC	4 cut(s)	199, 353, 1149, 2503
Ppu21I	YACGTR	1 cut(s)	2043
PpuMI	RGGWCCY	1 cut(s)	3312
PscI	ACATGT	3 cut(s)	1459, 1961, 2465
PshBI	ATTAAT	2 cut(s)	1008, 2796
PsiI	TTATAA	1 cut(s)	1101
Psp124BI	GAGCTC	1 cut(s)	130
Psp5II	RGGWCCY	1 cut(s)	3312
Psp6I	CCWGG	5 cut(s)	283, 365, 1383, 1860, 3362
PspFI	CCCAGC	3 cut(s)	1445, 1655, 2060
PspGI	CCWGG	5 cut(s)	283, 365, 1383, 1860, 3362
PspN4I	GGNNCC	1 cut(s)	76
PspPI	GGNCC	4 cut(s)	74, 250, 604, 3312
PspPPI	RGGWCCY	1 cut(s)	3312
PspXI	VCTCGAGB	1 cut(s)	2281
PstI	CTGCAG	1 cut(s)	1675
PsuI	RGATCY	2 cut(s)	1575, 3268
RseI	CAYNNNNRTG	2 cut(s)	622, 3072
SacI	GAGCTC	1 cut(s)	130
SatI	GCNGC	8 cut(s)	615, 831, 1671, 1699, 2199, 3141, 3144, 3219
Sau96I	GGNCC	4 cut(s)	74, 250, 604, 3312
ScaI	AGTACT	2 cut(s)	676, 1261
SchI	GAGTC	4 cut(s)	200, 353, 1149, 2504
ScrFI	CCNGG	5 cut(s)	285, 367, 1385, 1862, 3364
SduI	GDGCHC	3 cut(s)	130, 1122, 1425
SfaNI	GCATC	6 cut(s)	412, 626, 2671, 2732, 2928, 2994
SfcI	CTRYAG	3 cut(s)	177, 519, 1671
Sfr274I	CTCGAG	1 cut(s)	2281
SfuI	TTCGAA	3 cut(s)	11, 407, 2962
SinI	GGWCC	3 cut(s)	74, 604, 3312
SlaI	CTCGAG	1 cut(s)	2281
SmiMI	CAYNNNNRTG	2 cut(s)	622, 3072
SmlI	CTYRAG	1 cut(s)	2281
SmoI	CTYRAG	1 cut(s)	2281
SnaBI	TACGTA	1 cut(s)	2043
SpeI	ACTAGT	1 cut(s)	2629
SphI	GCATGC	1 cut(s)	2412
SsiI	CCGC	2 cut(s)	2199, 3140
SspMI	CTAG	8 cut(s)	342, 348, 587, 729, 981, 1716, 2162, 2630
SstI	GAGCTC	1 cut(s)	130
StyD4I	CCNGG	5 cut(s)	283, 365, 1383, 1860, 3362
StyI	CCWWGG	1 cut(s)	1047
TaaI	ACNGT	7 cut(s)	923, 948, 1541, 1607, 1933, 2048, 2700
TaiI	ACGT	2 cut(s)	1560, 2045
TaqI	TCGA	5 cut(s)	11, 167, 407, 2282, 2962
TaqII	GACCGA	1 cut(s)	198
TauI	GCSGC	2 cut(s)	2201, 3143
TfiI	GAWTC	5 cut(s)	169, 1396, 1591, 1660, 2644
TscAI	CASTG	6 cut(s)	201, 240, 1182, 1425, 1612, 3327
TseFI	GTSAC	4 cut(s)	192, 2468, 2866, 2876
TseI	GCWGC	6 cut(s)	614, 830, 1670, 1698, 3143, 3218
Tsp45I	GTSAC	4 cut(s)	192, 2468, 2866, 2876
TspGWI	ACGGA	2 cut(s)	403, 2709
TspRI	CASTG	6 cut(s)	201, 240, 1182, 1425, 1612, 3327
Van91I	CCANNNNNTGG	1 cut(s)	239
VpaK11BI	GGWCC	3 cut(s)	74, 604, 3312
VspI	ATTAAT	2 cut(s)	1008, 2796
XagI	CCTNNNNNAGG	1 cut(s)	3035
XapI	RAATTY	6 cut(s)	33, 257, 1678, 1888, 1975, 3298
XceI	RCATGY	6 cut(s)	898, 1463, 1965, 2412, 2469, 2959
XcmI	CCANNNNNNNNNTGG	1 cut(s)	373
XhoI	CTCGAG	1 cut(s)	2281
XmiI	GTMKAC	3 cut(s)	1310, 1843, 2774
XmnI	GAANNNNTTC	1 cut(s)	260
XspI	CTAG	8 cut(s)	342, 348, 587, 729, 981, 1716, 2162, 2630
ZrmI	AGTACT	2 cut(s)	676, 1261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.