Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0012309

Physical Location & Seq

Genomic Coordinates Reverse (-)

82809671 .. 82813423

Gene Structure 3753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036637

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3399 bp

ATGTTGCCTTCCAAGACTAAACAACTCTCCCAAATTTCCCACACAATTTCAAAGCTCAGAGCTTTTCATGGTGGTTCCTCTCCAAATGTCAAAAGCAATCTCAAAGAAAATGGCTTCAGAAACAGAGTTCATAGAACCACCCAAACCTCAGGTTCAGATATGGAGAAGAGCATATACTCAATTCTCACTATAGACCGATGGGAGTCACTGAACCACATGGAGTATAAGTTGGCTTCTCTTAGACCAGTGCATGGAAGAATGGCTCTGAAATTCTTCAACTGGGTCATTGAACAGCCTGGTTTGAAACTCAATCATCTAACTCATATACTCTCTGTTACAACTCATATACTTGCTAGAGCTAGAATGTATGGCTCTGCCAGGTTAATTTTGGGGCATTTAGCACAGTTGGGTGCTGACTCGAAATCTGTTTTTGGTGCTTTGATGGATACTTACCCTCTTTGCAATTCAAACCCTTCAGTATTTGACCTTTTGATTAGAGTTTACTTGAGGGAAGGGATGGTTGGTAATGCTGTAGAGACTTTTTATTTGATGGGTTTAAGGGGGTTTAGGCCATCGGGTTATACTTGTAATATGATTCTAGCTTCGTTGGCAAAGGACCAGAGGGTTGCCTCGGTGTGGTCTTTTTTCAAAGAAATGCTGGCTAATAATGTTTGCCCTGATGTTAGTACTTTTAATATATTGATTAGTGTTTTGTGTGTGGAAGGGAAGCTTAGTAAAGCTAGTTATCTTTTGAGGAAGATGGAAAAGAGTGGTTATGTTCCTAATGTAGTTACTTATAATACTTTGCTCAATTGGTACTGCAAAAAGGGGAGGTATAAAGCAGCTTTTGAGCTTATTGATCATATGGGTTCTAAGGGTATTGAAGCAGATGTATGCACATATAACATGCTTATTGAGGATTTGTGTAGAAACAGTAGTAGTGCAAAAGGTTATTTGCTGTTGAAGAAGATGAGAAGGAAGAAGTTATCTCCTAATCAGGTTACCTACAATATCCTTATTAATGGGTTTGTCAAGGAGGGGAAAATTGGTGTGGCCACCAAGGTTTTTGATGAAATGTCAATGTTTAATCTTTCACCAAATTGTGTTACTTATAATGCTCTGATTGACGGGCTCTGTCAAAAGGGTAAGCTTGAAGAAGCTCTCAGACTCTTGGACATGATGGAAGTAGTGGGACTAAAACCTAATGAAGTCACCTATGGTGCTGTTTTAAATGGGTTGTGCAAGCATGGTAAGTTTGATTTAGCAAGAAGTACTTTTCAGAGAATGCGATTGAATGGGATTGTTAGTGGTTGCATTATGTATACATTGATCATGGATGGGTTATGCAAAAATGGGTTGCTTGATGAATCTGTGCACTTGCTTAATATGATGGTCCAGGATGGTGTGAATCCTGATATCGTAGCATTTTCAGTGCTCATAACTGGATTCTGCAGAGCTGGGAGGATGAAACATGTAAGAGAAATAATGTGTAAGCTGTATAGAGCTGGCCTTGCACCGAATAAAATTATATATTCTAGCTTAATCTACTACTCTTGCAAGATGGGCAACATAATCGAAGCATTAAAGATCTATGTAGTTATGAGTCATAATGGCCACACTGCTGACCATTTCACATGTAACATATTGGTTACTGCACTTTGTGAAGCTGGGAACCTTGGTGCTGCAGAGGATTTCATGCAGCATATGAGCAGCATGGGTCTGGTTGCCAATTCCATTTCTTTTGATTGTATGATAAATGGGTATGGAAACATGGGTGATGCCTTAGGAGCGTTTTCTATGTTTGATGAAATGATAAGATTAGGTCATCACCCTAGTCCATTTACTTATGGAAGTATACTAAAAGGGCTATGCAGGGGTGGTCATTTGGAGGTGGCAAGGAAATTTTTGAAGAAACTCCACAGCATTCCATCGGCTGTTGATACTGTTGTGTACAATACAATACTTTCTGAGACATGCAATTCTGGGAATTTGCAAGAGGCTGTTGTCCTTCTTGATGAGATGGTTGAGAATAATGTCCTGCCCGATACTTGTACGTACAGTAGCCTTCTTGCTGGGTTATGCAGGAAGGGAAAAGTGGTTGCTGCCATCCTATTGTTTGGGAGAGTTATGGAAAAAGGAATTTTGTCACCAAATCCCATAATGTACACCTGTCTAGTTGATGGCCTTTTCAAGATTGGGCAACCTAAGGCTGCTTCATATCTATTTGAAGAGATGGAGAACAAAGGTCTGTACTCGGATACTACTGCTCTTAATGTAATGATGGATGGATACTCAAGGATGGGAAAAATGATGAAGGCAAATGATCTCTTTTCAACTATGGGGGGCCGAAGATTGTCCCCCAATTTGGCTTCATGTAACATTCTGTTGCATGGATACTCAAAGAAACAAGACTTCTTGGCATGCTCTATGGTGTACAAAAACATGATCAGGGTCAAATTATTGCCTGACAAATTGACATGTCACTCTCTTATTCTTGGATTATGCGAGTCAGGTAAGGTGGATATTGGCCACAAAATGTTGCATAAGATGATTATGGAAGGTGCTGTACCTGATCTTTTAACATTCAATTTGCTTATTCGCAAGTTTTCTGAGATTGGGAAGATAGGGATGGCATTTGAGCTAGTGAGTGTCATGAATCTGTTAGGATTTTCTGCTAATACAGACACTCATGGCGCAATCTTAAATGGACTGTTCAGAATTTCAGCTTTCCGCGCATCCTGTAGTCTTCTGTATGAAATGTTGGCCAAAGGATTTACTCCCAAGTATACACATTATTTCACTATAATTAATGGTATGTGTAGAGTGGGAGATATACAAGGAGCATTTGAGCTAAAAGATCAGATGGAAGCTCTTGGTATCACTTCTAGTGACATTGCTGAGAGTGCTATGGTTAGAGGGCTTGCGAAATGTGGGAAGGTTGAAGAAGCGATGCTGGTTCTTGATCGCATGCTTCGAATGCAACTTGTTCCAACTACTGCTACTTTTACTACTTTGATGCATAAGTTCTGCAAAGAAGCCAACCTTGCAGAGGCTCTAAAATTGAGGGGTGTAATGGAACATTGTGGTGTGCCACTCGATGTTGCTGCTTTTAATGTTCTCATTTCAGGCCTTTGTGCTAATGGTGATGTTGTGGCTGCATTTGAGCTGTACAAGGAGATGAAACGGAGTGGGCTCTTGCCCAACACAACAACGTACACTCTTCTCCTTGCTGCTGTTTCCTCTGGTAATAATCATATTGAAGGTGAAGAGATTTTGGGAGATTTATTGGGAAAGGGTTTAATATCTGGAAATTTGGATGGAAGCACCTTGACACTGCATGAGCAATTGAATGTTGCAATGGGAACATTAAACTCTTGGAGGTGCAATAAATGGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

1133

Amino Acids

125.18

Weight (kDa)

8.92

Isoelectric Point (pI)

30.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	195 - 239	5.3e-10	PPR repeat family
PPR_long	PF17177	205 - 343	1.1e-11	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	216 - 274	3e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	223 - 255	1.9e-09	PPR repeat
PPR_2	PF13041	226 - 271	6.2e-13	PPR repeat family
PPR_3	PF13812	250 - 306	3.1e-11	Pentatricopeptide repeat domain
TPR_24	PF23276	251 - 358	4.1e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	258 - 289	2.4e-11	PPR repeat
PPR_2	PF13041	261 - 310	7.6e-19	PPR repeat family
PPR	PF01535	264 - 294	1.9e-07	PPR repeat
PPR_3	PF13812	285 - 345	5.5e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	297 - 345	1.1e-12	PPR repeat family
PPR_long	PF17177	312 - 418	3.5e-08	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	328 - 360	1.8e-10	PPR repeat
PPR_2	PF13041	331 - 380	3.6e-17	PPR repeat family
PPR	PF01535	334 - 361	4.3e-06	PPR repeat
PPR_3	PF13812	354 - 411	3.9e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	363 - 395	3.4e-14	PPR repeat
PPR_2	PF13041	366 - 415	1.2e-17	PPR repeat family
PPR	PF01535	369 - 398	7.3e-09	PPR repeat
PPR_1	PF12854	398 - 430	1.1e-07	PPR repeat
PPR	PF01535	404 - 434	3.3e-06	PPR repeat
PPR_2	PF13041	439 - 485	2.2e-11	PPR repeat family
PPR	PF01535	439 - 469	8.6e-06	PPR repeat
PPR_3	PF13812	460 - 515	4.1e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	467 - 490	8.6e-06	PPR repeat
PPR_2	PF13041	471 - 519	1.1e-06	PPR repeat family
PPR_2	PF13041	506 - 554	1.2e-07	PPR repeat family
PPR_2	PF13041	542 - 589	1.2e-07	PPR repeat family
TPR_24	PF23276	562 - 670	5e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	577 - 625	4.2e-11	PPR repeat family
PPR_2	PF13041	647 - 695	6.6e-15	PPR repeat family
PPR_1	PF12854	647 - 675	3.9e-06	PPR repeat
PPR_1	PF12854	678 - 706	7.3e-07	PPR repeat
PPR_2	PF13041	753 - 801	3e-09	PPR repeat family
PPR_2	PF13041	787 - 835	5.1e-07	PPR repeat family
PPR_2	PF13041	822 - 869	4.9e-06	PPR repeat family
PPR_long	PF17177	877 - 1013	1.7e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	932 - 976	4.9e-06	PPR repeat family
TPR_24	PF23276	968 - 1060	1.6e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	969 - 1011	1.3e-07	PPR repeat family
PPR_2	PF13041	997 - 1045	3e-09	PPR repeat family
PPR_3	PF13812	1025 - 1079	2.4e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	1029 - 1061	1.5e-07	PPR repeat
PPR_2	PF13041	1033 - 1078	9.4e-15	PPR repeat family
PPR	PF01535	1036 - 1065	1.2e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55840 AT5G55840 AT5G55840
fragaria_vesca	FvH4_3g42930
malus_domestica	MD03G1028500.v1.1
prunus_persica	Prupe.6G024500_v2.0.a1 Prupe.6G024500_v2.0.a1
pyrus_communis	pycom03g02310
rosa_chinensis	RchiOBHm_Chr5g0076971
rosa_laevigata	RLG00000036637
rosa_multiflora	Rmu_sc0004655.1_g000020
rosa_roxburghii	Rroxscaffold_1G00005180
rosa_rugosa	Rorug05G0449800 Rorug05G0449900
rosa_samantha	Rh5AG504500 Rh5BG526200 Rh5CG550100 Rh5DG538400
rosa_wichuraiana	Rw5G047180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	798, 1113
AccB7I	CCANNNNNTGG	1 cut(s)	251
AccI	GTMKAC	3 cut(s)	1322, 1855, 2786
AccII	CGCG	1 cut(s)	2733
AciI	CCGC	1 cut(s)	2731
AcoI	YGGCCR	4 cut(s)	1053, 1612, 2527, 2763
AcsI	RAATTY	7 cut(s)	33, 269, 1901, 1987, 2139, 2718, 3310
AcuI	CTGAAG	2 cut(s)	100, 459
AdeI	CACNNNGTG	1 cut(s)	1661
AfiI	CCNNNNNNNGG	4 cut(s)	251, 636, 2365, 3049
AflIII	ACRYGT	3 cut(s)	1471, 1634, 2477
AjnI	CCWGG	3 cut(s)	295, 377, 1395
AjuI	GAANNNNNNNTTGG	2 cut(s)	504, 536
Alw21I	GWGCWC	2 cut(s)	1377, 1437
Alw26I	GTCTC	2 cut(s)	530, 1964
Alw44I	GTGCAC	1 cut(s)	1373
AoxI	GGCC	9 cut(s)	569, 1053, 1507, 1612, 2182, 2344, 2527, 2763, 3127
ApaLI	GTGCAC	1 cut(s)	1373
ApeKI	GCWGC	9 cut(s)	842, 1682, 1699, 1710, 2102, 2210, 3104, 3155, 3230
ApoI	RAATTY	7 cut(s)	33, 269, 1901, 1987, 2139, 2718, 3310
ArsI	GACNNNNNNTTYG	2 cut(s)	529, 561
AseI	ATTAAT	2 cut(s)	1020, 2808
Asp700I	GAANNNNTTC	1 cut(s)	272
AspLEI	GCGC	2 cut(s)	2696, 2735
AspS9I	GGNCC	3 cut(s)	616, 1393, 2344
AsuHPI	GGTGA	7 cut(s)	1086, 1204, 1787, 1820, 2139, 3155, 3275
AsuII	TTCGAA	1 cut(s)	2974
AvaII	GGWCC	2 cut(s)	616, 1393
AxyI	CCTNAGG	3 cut(s)	148, 1783, 2205
BaeGI	GKGCMC	1 cut(s)	1377
BaeI	ACNNNNGTAYC	2 cut(s)	1932, 1965
BalI	TGGCCA	4 cut(s)	1055, 1614, 2529, 2765
BanII	GRGCYC	2 cut(s)	1134, 3195
BarI	GAAGNNNNNNTAC	4 cut(s)	158, 190, 2550, 2582
BbsI	GAAGAC	1 cut(s)	2738
Bbv12I	GWGCWC	2 cut(s)	1377, 1437
BbvI	GCAGC	9 cut(s)	854, 1669, 1711, 1722, 2089, 2197, 3091, 3142, 3217
BcgI	CGANNNNNNTGC	4 cut(s)	1555, 1589, 3086, 3120
BciT130I	CCWGG	3 cut(s)	297, 379, 1397
BciVI	GTATCC	4 cut(s)	439, 2251, 2282, 2387
BclI	TGATCA	3 cut(s)	859, 1329, 2445
BcoDI	GTCTC	2 cut(s)	530, 1964
BfaI	CTAG	9 cut(s)	354, 360, 599, 741, 1536, 1833, 2174, 2642, 2886
BfmI	CTRYAG	5 cut(s)	189, 531, 1450, 1683, 2740
BfuI	GTATCC	4 cut(s)	439, 2251, 2282, 2387
BglII	AGATCT	1 cut(s)	1587
BisI	GCNGC	9 cut(s)	843, 1683, 1700, 1711, 2103, 2211, 3105, 3156, 3231
BlsI	GCNGC	9 cut(s)	844, 1684, 1701, 1712, 2104, 2212, 3106, 3157, 3232
BmcAI	AGTACT	2 cut(s)	688, 1273
Bme1390I	CCNGG	3 cut(s)	297, 379, 1397
Bme18I	GGWCC	2 cut(s)	616, 1393
BmgT120I	GGNCC	3 cut(s)	616, 1393, 2344
BmiI	GGNNCC	3 cut(s)	76, 1673, 2345
BmrFI	CCNGG	3 cut(s)	297, 379, 1397
BmrI	ACTGGG	1 cut(s)	289
BmsI	GCATC	4 cut(s)	1768, 2744, 2940, 3006
BmuI	ACTGGG	1 cut(s)	289
BpiI	GAAGAC	1 cut(s)	2738
Bpu14I	TTCGAA	1 cut(s)	2974
BpuEI	CTTGAG	2 cut(s)	526, 2278
BsaAI	YACGTR	1 cut(s)	2055
BsaJI	CCNNGG	3 cut(s)	630, 1059, 1675
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	4 cut(s)	251, 636, 2365, 3049
Bse1I	ACTGG	3 cut(s)	245, 284, 1447
Bse21I	CCTNAGG	3 cut(s)	148, 1783, 2205
Bse3DI	GCAATG	2 cut(s)	2892, 3363
BseBI	CCWGG	3 cut(s)	297, 379, 1397
BseDI	CCNNGG	3 cut(s)	630, 1059, 1675
BseLI	CCNNNNNNNGG	4 cut(s)	251, 636, 2365, 3049
BseMI	GCAATG	2 cut(s)	2892, 3363
BseMII	CTCAG	6 cut(s)	70, 162, 1177, 1959, 2601, 2889
BseNI	ACTGG	3 cut(s)	245, 284, 1447
BseSI	GKGCMC	1 cut(s)	1377
BseXI	GCAGC	9 cut(s)	854, 1669, 1711, 1722, 2089, 2197, 3091, 3142, 3217
BseYI	CCCAGC	3 cut(s)	1457, 1667, 2072
BsgI	GTGCAG	1 cut(s)	1638
Bsh1236I	CGCG	1 cut(s)	2733
BshFI	GGCC	9 cut(s)	571, 1055, 1509, 1614, 2184, 2346, 2529, 2765, 3129
BsiHKAI	GWGCWC	2 cut(s)	1377, 1437
BslFI	GGGAC	2 cut(s)	1206, 2341
BslI	CCNNNNNNNGG	4 cut(s)	251, 636, 2365, 3049
BsmAI	GTCTC	2 cut(s)	530, 1964
BsmFI	GGGAC	2 cut(s)	1206, 2341
BsmI	GAATGC	3 cut(s)	1290, 1923, 2982
BsnI	GGCC	9 cut(s)	571, 1055, 1509, 1614, 2184, 2346, 2529, 2765, 3129
Bsp119I	TTCGAA	1 cut(s)	2974
Bsp1286I	GDGCHC	4 cut(s)	1134, 1377, 1437, 3195
Bsp1407I	TGTACA	4 cut(s)	1950, 2163, 2433, 3168
Bsp143I	GATC	8 cut(s)	859, 1329, 1587, 2323, 2445, 2572, 2857, 2962
BspACI	CCGC	1 cut(s)	2731
BspANI	GGCC	9 cut(s)	571, 1055, 1509, 1614, 2184, 2346, 2529, 2765, 3129
BspCNI	CTCAG	6 cut(s)	69, 161, 1176, 1960, 2602, 2890
BspFNI	CGCG	1 cut(s)	2733
BspHI	TCATGA	1 cut(s)	2652
BspLI	GGNNCC	3 cut(s)	76, 1673, 2345
BspMAI	CTGCAG	2 cut(s)	1454, 1687
BspQI	GCTCTTC	1 cut(s)	161
BspT104I	TTCGAA	1 cut(s)	2974
BsrDI	GCAATG	2 cut(s)	2892, 3363
BsrGI	TGTACA	4 cut(s)	1950, 2163, 2433, 3168
BsrI	ACTGG	3 cut(s)	245, 284, 1447
BssECI	CCNNGG	3 cut(s)	630, 1059, 1675
BssMI	GATC	8 cut(s)	859, 1329, 1587, 2323, 2445, 2572, 2857, 2962
BssNAI	GTATAC	3 cut(s)	1323, 1856, 2787
BssT1I	CCWWGG	2 cut(s)	1059, 1675
Bst1107I	GTATAC	3 cut(s)	1323, 1856, 2787
Bst2UI	CCWGG	3 cut(s)	297, 379, 1397
Bst4CI	ACNGT	5 cut(s)	405, 935, 1945, 2060, 2712
Bst6I	CTCTTC	4 cut(s)	161, 2223, 3225, 3261
BstAUI	TGTACA	4 cut(s)	1950, 2163, 2433, 3168
BstBAI	YACGTR	1 cut(s)	2055
BstBI	TTCGAA	1 cut(s)	2974
BstC8I	GCNNGC	6 cut(s)	660, 1244, 1507, 2422, 2922, 2969
BstEII	GGTNACC	1 cut(s)	1000
BstENI	CCTNNNNNAGG	1 cut(s)	3047
BstFNI	CGCG	1 cut(s)	2733
BstHHI	GCGC	2 cut(s)	2696, 2735
BstKTI	GATC	8 cut(s)	862, 1332, 1590, 2326, 2448, 2575, 2860, 2965
BstMAI	GTCTC	2 cut(s)	530, 1964
BstMBI	GATC	8 cut(s)	859, 1329, 1587, 2323, 2445, 2572, 2857, 2962
BstMWI	GCNNNNNNNGC	8 cut(s)	608, 1511, 1563, 1787, 2732, 2903, 2977, 3044
BstNI	CCWGG	3 cut(s)	297, 379, 1397
BstNSI	RCATGY	7 cut(s)	910, 1475, 1638, 1977, 2424, 2481, 2971
BstPI	GGTNACC	1 cut(s)	1000
BstSCI	CCNGG	3 cut(s)	295, 377, 1395
BstSFI	CTRYAG	5 cut(s)	189, 531, 1450, 1683, 2740
BstSLI	GKGCMC	1 cut(s)	1377
BstSNI	TACGTA	1 cut(s)	2055
BstUI	CGCG	1 cut(s)	2733
BstV1I	GCAGC	9 cut(s)	854, 1669, 1711, 1722, 2089, 2197, 3091, 3142, 3217
BstV2I	GAAGAC	1 cut(s)	2738
BstX2I	RGATCY	1 cut(s)	1587
BstYI	RGATCY	1 cut(s)	1587
BstZ17I	GTATAC	3 cut(s)	1323, 1856, 2787
Bsu36I	CCTNAGG	3 cut(s)	148, 1783, 2205
BsuI	GTATCC	4 cut(s)	439, 2251, 2282, 2387
BsuRI	GGCC	9 cut(s)	571, 1055, 1509, 1614, 2184, 2346, 2529, 2765, 3129
BtgZI	GCGATG	1 cut(s)	2963
BtsI	GCAGTG	2 cut(s)	1617, 3332
BtsIMutI	CAGTG	5 cut(s)	206, 252, 1437, 1617, 3332
Cac8I	GCNNGC	6 cut(s)	660, 1244, 1507, 2422, 2922, 2969
CciI	TCATGA	1 cut(s)	2652
CfoI	GCGC	2 cut(s)	2696, 2735
Cfr13I	GGNCC	3 cut(s)	616, 1393, 2344
DpnI	GATC	8 cut(s)	861, 1331, 1589, 2325, 2447, 2574, 2859, 2964
DpnII	GATC	8 cut(s)	859, 1329, 1587, 2323, 2445, 2572, 2857, 2962
DraI	TTTAAA	1 cut(s)	1230
DraIII	CACNNNGTG	1 cut(s)	1661
EaeI	YGGCCR	4 cut(s)	1053, 1612, 2527, 2763
Eam1104I	CTCTTC	4 cut(s)	161, 2223, 3225, 3261
EarI	CTCTTC	4 cut(s)	161, 2223, 3225, 3261
Eco105I	TACGTA	1 cut(s)	2055
Eco130I	CCWWGG	2 cut(s)	1059, 1675
Eco147I	AGGCCT	1 cut(s)	3129
Eco24I	GRGCYC	2 cut(s)	1134, 3195
Eco32I	GATATC	1 cut(s)	1417
Eco47I	GGWCC	2 cut(s)	616, 1393
Eco57I	CTGAAG	2 cut(s)	100, 459
Eco81I	CCTNAGG	3 cut(s)	148, 1783, 2205
Eco91I	GGTNACC	1 cut(s)	1000
EcoNI	CCTNNNNNAGG	1 cut(s)	3047
EcoO65I	GGTNACC	1 cut(s)	1000
EcoRII	CCWGG	3 cut(s)	295, 377, 1395
EcoRV	GATATC	1 cut(s)	1417
EcoT14I	CCWWGG	2 cut(s)	1059, 1675
EcoT22I	ATGCAT	1 cut(s)	3021
EcoT38I	GRGCYC	2 cut(s)	1134, 3195
ErhI	CCWWGG	2 cut(s)	1059, 1675
FalI	AAGNNNNNCTT	6 cut(s)	714, 746, 1258, 1290, 3027, 3059
FaqI	GGGAC	2 cut(s)	1206, 2341
FauNDI	CATATG	2 cut(s)	864, 1704
FbaI	TGATCA	3 cut(s)	859, 1329, 2445
FblI	GTMKAC	3 cut(s)	1322, 1855, 2786
Fnu4HI	GCNGC	9 cut(s)	843, 1683, 1700, 1711, 2103, 2211, 3105, 3156, 3231
FriOI	GRGCYC	2 cut(s)	1134, 3195
Fsp4HI	GCNGC	9 cut(s)	843, 1683, 1700, 1711, 2103, 2211, 3105, 3156, 3231
FspBI	CTAG	9 cut(s)	354, 360, 599, 741, 1536, 1833, 2174, 2642, 2886
GlaI	GCGC	2 cut(s)	2695, 2734
GluI	GCNGC	9 cut(s)	843, 1683, 1700, 1711, 2103, 2211, 3105, 3156, 3231
GsaI	CCCAGC	3 cut(s)	1461, 1671, 2076
HaeIII	GGCC	9 cut(s)	571, 1055, 1509, 1614, 2184, 2346, 2529, 2765, 3129
HhaI	GCGC	2 cut(s)	2696, 2735
Hin6I	GCGC	2 cut(s)	2694, 2733
HinP1I	GCGC	2 cut(s)	2694, 2733
HindIII	AAGCTT	2 cut(s)	728, 1148
HphI	GGTGA	7 cut(s)	1086, 1204, 1787, 1820, 2139, 3155, 3275
Hpy166II	GTNNAC	9 cut(s)	502, 1323, 1375, 1856, 1951, 2166, 2434, 2787, 3216
Hpy188III	TCNNGA	6 cut(s)	1412, 2012, 2191, 2653, 2960, 3306
Hpy8I	GTNNAC	9 cut(s)	502, 1323, 1375, 1856, 1951, 2166, 2434, 2787, 3216
HpyCH4III	ACNGT	5 cut(s)	405, 935, 1945, 2060, 2712
HpyCH4IV	ACGT	2 cut(s)	2054, 3212
HpyF10VI	GCNNNNNNNGC	8 cut(s)	608, 1511, 1563, 1787, 2732, 2903, 2977, 3044
HpySE526I	ACGT	2 cut(s)	2054, 3212
HspAI	GCGC	2 cut(s)	2694, 2733
Ksp22I	TGATCA	3 cut(s)	859, 1329, 2445
Kzo9I	GATC	8 cut(s)	859, 1329, 1587, 2323, 2445, 2572, 2857, 2962
LguI	GCTCTTC	1 cut(s)	161
LmnI	GCTCC	2 cut(s)	1787, 2840
Lsp1109I	GCAGC	9 cut(s)	854, 1669, 1711, 1722, 2089, 2197, 3091, 3142, 3217
LweI	GCATC	4 cut(s)	1768, 2744, 2940, 3006
MaeI	CTAG	9 cut(s)	354, 360, 599, 741, 1536, 1833, 2174, 2642, 2886
MaeII	ACGT	2 cut(s)	2054, 3212
MalI	GATC	8 cut(s)	861, 1331, 1589, 2325, 2447, 2574, 2859, 2964
MboI	GATC	8 cut(s)	859, 1329, 1587, 2323, 2445, 2572, 2857, 2962
MfeI	CAATTG	2 cut(s)	811, 3344
MflI	RGATCY	1 cut(s)	1587
MhlI	GDGCHC	4 cut(s)	1134, 1377, 1437, 3195
MlsI	TGGCCA	4 cut(s)	1055, 1614, 2529, 2765
MluNI	TGGCCA	4 cut(s)	1055, 1614, 2529, 2765
MlyI	GAGTC	5 cut(s)	212, 410, 1161, 1612, 2516
MmeI	TCCRAC	1 cut(s)	3014
Mox20I	TGGCCA	4 cut(s)	1055, 1614, 2529, 2765
Mph1103I	ATGCAT	1 cut(s)	3021
MroXI	GAANNNNTTC	1 cut(s)	272
MscI	TGGCCA	4 cut(s)	1055, 1614, 2529, 2765
MslI	CAYNNNNRTG	1 cut(s)	3084
Msp20I	TGGCCA	4 cut(s)	1055, 1614, 2529, 2765
MspR9I	CCNGG	3 cut(s)	297, 379, 1397
MunI	CAATTG	2 cut(s)	811, 3344
Mva1269I	GAATGC	3 cut(s)	1290, 1923, 2982
MvaI	CCWGG	3 cut(s)	297, 379, 1397
MvnI	CGCG	1 cut(s)	2733
MwoI	GCNNNNNNNGC	8 cut(s)	608, 1511, 1563, 1787, 2732, 2903, 2977, 3044
NdeI	CATATG	2 cut(s)	864, 1704
NdeII	GATC	8 cut(s)	859, 1329, 1587, 2323, 2445, 2572, 2857, 2962
NlaIV	GGNNCC	3 cut(s)	76, 1673, 2345
NmuCI	GTSAC	5 cut(s)	204, 1210, 2145, 2480, 2888
NsiI	ATGCAT	1 cut(s)	3021
NspI	RCATGY	7 cut(s)	910, 1475, 1638, 1977, 2424, 2481, 2971
NspV	TTCGAA	1 cut(s)	2974
PaeI	GCATGC	2 cut(s)	2424, 2971
PagI	TCATGA	1 cut(s)	2652
PceI	AGGCCT	1 cut(s)	3129
PciI	ACATGT	3 cut(s)	1471, 1634, 2477
PciSI	GCTCTTC	1 cut(s)	161
PcsI	WCGNNNNNNNCGW	1 cut(s)	2971
PctI	GAATGC	3 cut(s)	1290, 1923, 2982
PdmI	GAANNNNTTC	1 cut(s)	272
PfeI	GAWTC	5 cut(s)	595, 1367, 1408, 1446, 2656
PflMI	CCANNNNNTGG	1 cut(s)	251
PfoI	TCCNGGA	1 cut(s)	1395
PkrI	GCNGC	9 cut(s)	844, 1684, 1701, 1712, 2104, 2212, 3106, 3157, 3232
PleI	GAGTC	5 cut(s)	211, 410, 1161, 1611, 2515
PpsI	GAGTC	5 cut(s)	211, 410, 1161, 1611, 2515
Ppu21I	YACGTR	1 cut(s)	2055
PscI	ACATGT	3 cut(s)	1471, 1634, 2477
PshBI	ATTAAT	2 cut(s)	1020, 2808
PsiI	TTATAA	2 cut(s)	798, 1113
Psp6I	CCWGG	3 cut(s)	295, 377, 1395
PspEI	GGTNACC	1 cut(s)	1000
PspFI	CCCAGC	3 cut(s)	1457, 1667, 2072
PspGI	CCWGG	3 cut(s)	295, 377, 1395
PspN4I	GGNNCC	3 cut(s)	76, 1673, 2345
PspPI	GGNCC	3 cut(s)	616, 1393, 2344
PstI	CTGCAG	2 cut(s)	1454, 1687
PsuI	RGATCY	1 cut(s)	1587
RseI	CAYNNNNRTG	1 cut(s)	3084
SapI	GCTCTTC	1 cut(s)	161
SatI	GCNGC	9 cut(s)	843, 1683, 1700, 1711, 2103, 2211, 3105, 3156, 3231
Sau3AI	GATC	8 cut(s)	859, 1329, 1587, 2323, 2445, 2572, 2857, 2962
Sau96I	GGNCC	3 cut(s)	616, 1393, 2344
ScaI	AGTACT	2 cut(s)	688, 1273
SchI	GAGTC	5 cut(s)	212, 410, 1161, 1612, 2516
ScrFI	CCNGG	3 cut(s)	297, 379, 1397
SduI	GDGCHC	4 cut(s)	1134, 1377, 1437, 3195
SfaNI	GCATC	4 cut(s)	1768, 2744, 2940, 3006
SfcI	CTRYAG	5 cut(s)	189, 531, 1450, 1683, 2740
SfuI	TTCGAA	1 cut(s)	2974
SinI	GGWCC	2 cut(s)	616, 1393
SmiMI	CAYNNNNRTG	1 cut(s)	3084
SmlI	CTYRAG	2 cut(s)	505, 2293
SmoI	CTYRAG	2 cut(s)	505, 2293
SnaBI	TACGTA	1 cut(s)	2055
SphI	GCATGC	2 cut(s)	2424, 2971
SseBI	AGGCCT	1 cut(s)	3129
SsiI	CCGC	1 cut(s)	2731
SspMI	CTAG	9 cut(s)	354, 360, 599, 741, 1536, 1833, 2174, 2642, 2886
StuI	AGGCCT	1 cut(s)	3129
StyD4I	CCNGG	3 cut(s)	295, 377, 1395
StyI	CCWWGG	2 cut(s)	1059, 1675
TaaI	ACNGT	5 cut(s)	405, 935, 1945, 2060, 2712
TaiI	ACGT	2 cut(s)	2057, 3215
TaqI	TCGA	4 cut(s)	419, 1575, 2974, 3096
TaqII	GACCGA	1 cut(s)	210
TatI	WGTACW	7 cut(s)	686, 1271, 1950, 2163, 2250, 2433, 3168
TfiI	GAWTC	5 cut(s)	595, 1367, 1408, 1446, 2656
TscAI	CASTG	5 cut(s)	213, 252, 1437, 1624, 3339
TseFI	GTSAC	5 cut(s)	204, 1210, 2145, 2480, 2888
TseI	GCWGC	9 cut(s)	842, 1682, 1699, 1710, 2102, 2210, 3104, 3155, 3230
Tsp45I	GTSAC	5 cut(s)	204, 1210, 2145, 2480, 2888
TspGWI	ACGGA	1 cut(s)	3199
TspRI	CASTG	5 cut(s)	213, 252, 1437, 1624, 3339
Van91I	CCANNNNNTGG	1 cut(s)	251
VneI	GTGCAC	1 cut(s)	1373
VpaK11BI	GGWCC	2 cut(s)	616, 1393
VspI	ATTAAT	2 cut(s)	1020, 2808
XagI	CCTNNNNNAGG	1 cut(s)	3047
XapI	RAATTY	7 cut(s)	33, 269, 1901, 1987, 2139, 2718, 3310
XceI	RCATGY	7 cut(s)	910, 1475, 1638, 1977, 2424, 2481, 2971
XcmI	CCANNNNNNNNNTGG	1 cut(s)	385
XmiI	GTMKAC	3 cut(s)	1322, 1855, 2786
XmnI	GAANNNNTTC	1 cut(s)	272
XspI	CTAG	9 cut(s)	354, 360, 599, 741, 1536, 1833, 2174, 2642, 2886
ZrmI	AGTACT	2 cut(s)	688, 1273
Zsp2I	ATGCAT	1 cut(s)	3021

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.