Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004655.1

Orthogroup ID

OG0012309

Physical Location & Seq

Genomic Coordinates Reverse (-)

65882 .. 69121

Gene Structure 3240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004655.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3240 bp

atggagaaaagcatatactcaattctcactatagaccgatgggagtcactgaaccacatggagtataagttggcttctcttagaccagtgcatggaagattggccttgaaattcttcaactgggtcattgaacagcctggtttggaactcaatcatctcactcatatactctcggttacaactcatatacttgctagagctagaatgtatgactctgccaggttaattttggggcatttagcacaattgggtgctgactcgaaatctgtttttggtgctttgatggatacttaccctctttgcaattcaagcccttcagtatttgaccttttgattagagtttacttgagggaagggatggttggtaatgctgtagagactttttatttgatgggtttaagggggtttaggccgtcggggtatacttgtaatatgattctagcttcgttggcaaaggaccagagggttgcatcggtgtggtcttttttcaacgaaatgctggctaataatgtttgccctgatgttagtacttttaatatattgattagtgttttgtgtgtggaagggaagcttagtaaagctagttatcttttgaggaagatggaaaagagtggttatgttcctaatgtagttacttataatactttgctcaattggtactgcaaaaaggggaggtataaagcagcttttgagcttattgatcatatgggttctaagggtattgaagcagatgtatgcacatataacatgcttattgaggatttgtgtagaaacagtagtagtgcgaaaggttatttgctgttgaagaagatgagaaggaagaagttatctcctaatcaggttacgtacaatatccttattaatgggtttgtcaaggaggggaaaattggtgtggccaccaaggtttttgatgaaatgtcaatgtttaatctttcaccaaattgtgttacttataatgctctgattgacgggctctgtcaaaagggtaagcttgaagaagctctcagactcttggacatgatggaagctgtgggactaaaacctaatgaagtcagctacggtgctgttttaaatgggttgtgcaagcatggtaagtttgatttagcaagaagtacttttcagagaatgcgattgaatgggattgttagtggttgcattatgtatacatcgatcatggatgggttatgcaaaaatgggttgcttgatgaatctgtgcatttgcttaatatgatggtccaggatggcgtgaatcctgatatagtagcattttcagtgctcataactggattctgcaaagctgggaggatgaaacatgtaagagaaataatgtgtaaactgtatagagctggccttgcaccgaataaaattatatattctaccttaatctactactcttgcaagatgggcaacataatcgaagcattaaagatctatgcagttatgaatcataatggccacactgccgaccttttcacatgtaacatattggttactgcactttgtgaagccgggaaccttggtgctgcagaggatttcatgcagcatatgagcagcatgggtttggttgccaattccatttcttttgattgtatgataaatgggtatggaaacatgggcgatgccttaggagcgttttctatgtttgatgaaatgattagattaggtcatcaccctagtccatttacttatggaagtatactgaaagggctatgcaggggtggtcatttggaggtggcaaggaaatttttgaagaaactccacagcattccatcggctgttgatactgttgtgtacaatacaatactttctgagacgtgcaattctgggaatttgcaagagtctgttgtccttcttgatgagatggttgagaataatgtcctgcccgatactcatacgtacagtagccttcttgctgggttatgcaggaagggaaaagtggttgctgccatcctattgtttgggagagttatggaaaaaggaattttgtcagcaaatcccataatgtacacctgtctagttgatggccttttcaagattgggcaacctaaggctgcttcatatctatttgaagagatggagaacaaaggtctgtactcagatactatttctcttaatgtaatgatggatggatactcaaggatggggaatatgatgaaggcaaatgatctcttttcaactatggggggccgaagattgtcccccaatttggcttcatgtaacattctgttgcatggatactctaagaaacaagacttattggcatgctctatggtgtacaaaaacatgatcagggtcaaattattgcctgacaaattgacatgtcactctcttattcttggattatgtgagtcaggtaaggtggatattggccacaaaatgttgcataagatgattatggaaggtgctgtacctgatcttttaacattcaatttgcttattaccaagtattctgagattgggaagatagggatggcatttgagctagtgagtgtcatgaatctgttgggagtttctgctaatactgacactcatggtgcaatcttaaatggactgttcagaatttcagctttccgcgcatcccgtagtcttctgtatgaaatgttggccaaaggatttactcccaagtatacacgttatttcactataattaatggtatgtgtagagtgggagatatacaaggagcatttgagctaaaagatcagatggaagctcttggtgtcacttcctgtgacattgctgagagtgctatggttagagggcttgcgaaatgtgggaaggttgaagaagcgatgctggttcttgatcacatgcttcgaatgcaacttgttccaactactgctacttttactactttgatgcataagttctgcaaagaagccaaccttgcagaggctctaaaattgaggggtgtaatggaacattgtggtgtgccactcgatgttgctgcttttaatgttctcatttcaggcctttgtgctaatggtgatgttgtggctgcatttgagctgtacaaggagatgaaacgaagtggtctcttgcccaacacaacaacgtacactcctctccttgctgctgtttcctctggtaataatcacattgaaggtgaagagattttgggagatttattgggaaaggggttgatatctggaaatttggatggaagcaccttaacactgcatgaccaattgaatgttgcaatgggaacattaaactcttggaggtgcaataagtggaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

1079

Amino Acids

119.16

Weight (kDa)

8.54

Isoelectric Point (pI)

30.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55840 AT5G55840 AT5G55840
fragaria_vesca	FvH4_3g42930
malus_domestica	MD03G1028500.v1.1
prunus_persica	Prupe.6G024500_v2.0.a1 Prupe.6G024500_v2.0.a1
pyrus_communis	pycom03g02310
rosa_chinensis	RchiOBHm_Chr5g0076971
rosa_laevigata	RLG00000036637
rosa_multiflora	Rmu_sc0004655.1_g000020
rosa_roxburghii	Rroxscaffold_1G00005180
rosa_rugosa	Rorug05G0449800 Rorug05G0449900
rosa_samantha	Rh5AG504500 Rh5BG526200 Rh5CG550100 Rh5DG538400
rosa_wichuraiana	Rw5G047180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	639, 954
AccB7I	CCANNNNNTGG	1 cut(s)	92
AccI	GTMKAC	4 cut(s)	422, 1163, 1696, 2627
AccII	CGCG	1 cut(s)	2574
AciI	CCGC	1 cut(s)	2572
AcoI	YGGCCR	4 cut(s)	894, 1453, 2368, 2604
AcsI	RAATTY	6 cut(s)	110, 1742, 1828, 1980, 2559, 3151
AcuI	CTGAAG	1 cut(s)	300
AdeI	CACNNNGTG	1 cut(s)	1502
AfiI	CCNNNNNNNGG	3 cut(s)	92, 2206, 2890
AflIII	ACRYGT	4 cut(s)	1312, 1475, 2318, 2630
AjiI	CACGTC	1 cut(s)	1815
AjnI	CCWGG	3 cut(s)	136, 218, 1236
AjuI	GAANNNNNNNTTGG	2 cut(s)	345, 377
Alw21I	GWGCWC	1 cut(s)	1278
Alw26I	GTCTC	3 cut(s)	371, 1805, 3038
ApeKI	GCWGC	9 cut(s)	683, 1523, 1540, 1551, 1943, 2051, 2945, 2996, 3071
ApoI	RAATTY	6 cut(s)	110, 1742, 1828, 1980, 2559, 3151
ArsI	GACNNNNNNTTYG	2 cut(s)	370, 402
AseI	ATTAAT	2 cut(s)	861, 2649
Asp700I	GAANNNNTTC	1 cut(s)	113
AspLEI	GCGC	1 cut(s)	2576
AspS9I	GGNCC	3 cut(s)	457, 1234, 2185
AsuC2I	CCSGG	1 cut(s)	1510
AsuHPI	GGTGA	4 cut(s)	927, 1661, 2996, 3116
AsuII	TTCGAA	1 cut(s)	2815
AvaII	GGWCC	2 cut(s)	457, 1234
AxyI	CCTNAGG	2 cut(s)	1624, 2046
BaeI	ACNNNNGTAYC	2 cut(s)	1773, 1806
BalI	TGGCCA	4 cut(s)	896, 1455, 2370, 2606
BanII	GRGCYC	1 cut(s)	975
BarI	GAAGNNNNNNTAC	2 cut(s)	2391, 2423
BbsI	GAAGAC	1 cut(s)	2579
Bbv12I	GWGCWC	1 cut(s)	1278
BbvI	GCAGC	9 cut(s)	695, 1510, 1552, 1563, 1930, 2038, 2932, 2983, 3058
BceAI	ACGGC	1 cut(s)	397
BcgI	CGANNNNNNTGC	4 cut(s)	1396, 1430, 2927, 2961
BciT130I	CCWGG	3 cut(s)	138, 220, 1238
BciVI	GTATCC	3 cut(s)	280, 2123, 2228
BclI	TGATCA	3 cut(s)	700, 2286, 2803
BcnI	CCSGG	1 cut(s)	1510
BcoDI	GTCTC	3 cut(s)	371, 1805, 3038
BfaI	CTAG	7 cut(s)	195, 201, 440, 582, 1674, 2015, 2483
BfmI	CTRYAG	3 cut(s)	30, 372, 1524
BfuI	GTATCC	3 cut(s)	280, 2123, 2228
BglII	AGATCT	1 cut(s)	1428
BisI	GCNGC	9 cut(s)	684, 1524, 1541, 1552, 1944, 2052, 2946, 2997, 3072
BlsI	GCNGC	9 cut(s)	685, 1525, 1542, 1553, 1945, 2053, 2947, 2998, 3073
BmcAI	AGTACT	2 cut(s)	529, 1114
Bme1390I	CCNGG	4 cut(s)	138, 220, 1238, 1510
Bme18I	GGWCC	2 cut(s)	457, 1234
BmgBI	CACGTC	1 cut(s)	1815
BmgT120I	GGNCC	3 cut(s)	457, 1234, 2185
BmiI	GGNNCC	2 cut(s)	1514, 2186
BmrFI	CCNGG	4 cut(s)	138, 220, 1238, 1510
BmrI	ACTGGG	1 cut(s)	130
BmsI	GCATC	5 cut(s)	479, 1609, 2585, 2781, 2847
BmuI	ACTGGG	1 cut(s)	130
BpiI	GAAGAC	1 cut(s)	2579
Bpu14I	TTCGAA	1 cut(s)	2815
BpuEI	CTTGAG	2 cut(s)	367, 2119
BpuMI	CCSGG	1 cut(s)	1510
Bsa29I	ATCGAT	1 cut(s)	1169
BsaAI	YACGTR	2 cut(s)	846, 1896
BsaI	GGTCTC	1 cut(s)	3038
BsaJI	CCNNGG	2 cut(s)	900, 1516
BsaXI	ACNNNNNCTCC	4 cut(s)	53, 83, 3043, 3073
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 2206, 2890
Bse1I	ACTGG	3 cut(s)	86, 125, 1288
Bse21I	CCTNAGG	2 cut(s)	1624, 2046
Bse3DI	GCAATG	2 cut(s)	2733, 3204
BseBI	CCWGG	3 cut(s)	138, 220, 1238
BseCI	ATCGAT	1 cut(s)	1169
BseDI	CCNNGG	2 cut(s)	900, 1516
BseLI	CCNNNNNNNGG	3 cut(s)	92, 2206, 2890
BseMI	GCAATG	2 cut(s)	2733, 3204
BseMII	CTCAG	5 cut(s)	1018, 1800, 2109, 2442, 2730
BseNI	ACTGG	3 cut(s)	86, 125, 1288
BseRI	GAGGAG	1 cut(s)	3051
BseXI	GCAGC	9 cut(s)	695, 1510, 1552, 1563, 1930, 2038, 2932, 2983, 3058
BseYI	CCCAGC	2 cut(s)	1298, 1913
BsgI	GTGCAG	1 cut(s)	1479
Bsh1236I	CGCG	1 cut(s)	2574
BshVI	ATCGAT	1 cut(s)	1169
BsiHKAI	GWGCWC	1 cut(s)	1278
BsiSI	CCGG	1 cut(s)	1509
BslFI	GGGAC	2 cut(s)	1047, 2182
BslI	CCNNNNNNNGG	3 cut(s)	92, 2206, 2890
BsmAI	GTCTC	3 cut(s)	371, 1805, 3038
BsmBI	CGTCTC	1 cut(s)	1805
BsmFI	GGGAC	2 cut(s)	1047, 2182
BsmI	GAATGC	3 cut(s)	1131, 1764, 2823
Bso31I	GGTCTC	1 cut(s)	3038
Bsp119I	TTCGAA	1 cut(s)	2815
Bsp1286I	GDGCHC	2 cut(s)	975, 1278
Bsp1407I	TGTACA	4 cut(s)	1791, 2004, 2274, 3009
Bsp143I	GATC	8 cut(s)	700, 1170, 1428, 2164, 2286, 2413, 2698, 2803
BspACI	CCGC	1 cut(s)	2572
BspCNI	CTCAG	5 cut(s)	1017, 1801, 2108, 2443, 2731
BspDI	ATCGAT	1 cut(s)	1169
BspFNI	CGCG	1 cut(s)	2574
BspHI	TCATGA	1 cut(s)	2493
BspLI	GGNNCC	2 cut(s)	1514, 2186
BspMAI	CTGCAG	1 cut(s)	1528
BspT104I	TTCGAA	1 cut(s)	2815
BspTNI	GGTCTC	1 cut(s)	3038
BsrDI	GCAATG	2 cut(s)	2733, 3204
BsrGI	TGTACA	4 cut(s)	1791, 2004, 2274, 3009
BsrI	ACTGG	3 cut(s)	86, 125, 1288
BssECI	CCNNGG	2 cut(s)	900, 1516
BssMI	GATC	8 cut(s)	700, 1170, 1428, 2164, 2286, 2413, 2698, 2803
BssNAI	GTATAC	4 cut(s)	423, 1164, 1697, 2628
BssT1I	CCWWGG	2 cut(s)	900, 1516
Bst1107I	GTATAC	4 cut(s)	423, 1164, 1697, 2628
Bst2UI	CCWGG	3 cut(s)	138, 220, 1238
Bst4CI	ACNGT	6 cut(s)	776, 1061, 1338, 1786, 1901, 2553
Bst6I	CTCTTC	2 cut(s)	2064, 3102
BstAUI	TGTACA	4 cut(s)	1791, 2004, 2274, 3009
BstBAI	YACGTR	2 cut(s)	846, 1896
BstBI	TTCGAA	1 cut(s)	2815
BstC8I	GCNNGC	5 cut(s)	501, 1085, 1348, 2263, 2763
BstENI	CCTNNNNNAGG	1 cut(s)	2888
BstFNI	CGCG	1 cut(s)	2574
BstHHI	GCGC	1 cut(s)	2576
BstKTI	GATC	8 cut(s)	703, 1173, 1431, 2167, 2289, 2416, 2701, 2806
BstMAI	GTCTC	3 cut(s)	371, 1805, 3038
BstMBI	GATC	8 cut(s)	700, 1170, 1428, 2164, 2286, 2413, 2698, 2803
BstMWI	GCNNNNNNNGC	9 cut(s)	309, 449, 1352, 1404, 1628, 2573, 2744, 2818, 2885
BstNI	CCWGG	3 cut(s)	138, 220, 1238
BstNSI	RCATGY	6 cut(s)	751, 1316, 1479, 2265, 2322, 2812
BstSCI	CCNGG	4 cut(s)	136, 218, 1236, 1508
BstSFI	CTRYAG	3 cut(s)	30, 372, 1524
BstSNI	TACGTA	2 cut(s)	846, 1896
BstUI	CGCG	1 cut(s)	2574
BstV1I	GCAGC	9 cut(s)	695, 1510, 1552, 1563, 1930, 2038, 2932, 2983, 3058
BstV2I	GAAGAC	1 cut(s)	2579
BstX2I	RGATCY	1 cut(s)	1428
BstYI	RGATCY	1 cut(s)	1428
BstZ17I	GTATAC	4 cut(s)	423, 1164, 1697, 2628
Bsu15I	ATCGAT	1 cut(s)	1169
Bsu36I	CCTNAGG	2 cut(s)	1624, 2046
BsuI	GTATCC	3 cut(s)	280, 2123, 2228
BsuTUI	ATCGAT	1 cut(s)	1169
BtgZI	GCGATG	2 cut(s)	1632, 2804
BtrI	CACGTC	1 cut(s)	1815
BtsI	GCAGTG	2 cut(s)	1458, 3173
BtsIMutI	CAGTG	5 cut(s)	47, 93, 1278, 1458, 3173
Cac8I	GCNNGC	5 cut(s)	501, 1085, 1348, 2263, 2763
CciI	TCATGA	1 cut(s)	2493
CfoI	GCGC	1 cut(s)	2576
Cfr13I	GGNCC	3 cut(s)	457, 1234, 2185
ClaI	ATCGAT	1 cut(s)	1169
DpnI	GATC	8 cut(s)	702, 1172, 1430, 2166, 2288, 2415, 2700, 2805
DpnII	GATC	8 cut(s)	700, 1170, 1428, 2164, 2286, 2413, 2698, 2803
DraI	TTTAAA	1 cut(s)	1071
DraIII	CACNNNGTG	1 cut(s)	1502
EaeI	YGGCCR	4 cut(s)	894, 1453, 2368, 2604
Eam1104I	CTCTTC	2 cut(s)	2064, 3102
EarI	CTCTTC	2 cut(s)	2064, 3102
Eco105I	TACGTA	2 cut(s)	846, 1896
Eco130I	CCWWGG	2 cut(s)	900, 1516
Eco147I	AGGCCT	1 cut(s)	2970
Eco24I	GRGCYC	1 cut(s)	975
Eco31I	GGTCTC	1 cut(s)	3038
Eco32I	GATATC	1 cut(s)	3144
Eco47I	GGWCC	2 cut(s)	457, 1234
Eco57I	CTGAAG	1 cut(s)	300
Eco81I	CCTNAGG	2 cut(s)	1624, 2046
EcoNI	CCTNNNNNAGG	1 cut(s)	2888
EcoRII	CCWGG	3 cut(s)	136, 218, 1236
EcoRV	GATATC	1 cut(s)	3144
EcoT14I	CCWWGG	2 cut(s)	900, 1516
EcoT22I	ATGCAT	1 cut(s)	2862
EcoT38I	GRGCYC	1 cut(s)	975
ErhI	CCWWGG	2 cut(s)	900, 1516
Esp3I	CGTCTC	1 cut(s)	1805
FalI	AAGNNNNNCTT	6 cut(s)	555, 587, 1099, 1131, 2868, 2900
FaqI	GGGAC	2 cut(s)	1047, 2182
FauNDI	CATATG	2 cut(s)	705, 1545
FbaI	TGATCA	3 cut(s)	700, 2286, 2803
FblI	GTMKAC	4 cut(s)	422, 1163, 1696, 2627
Fnu4HI	GCNGC	9 cut(s)	684, 1524, 1541, 1552, 1944, 2052, 2946, 2997, 3072
FriOI	GRGCYC	1 cut(s)	975
Fsp4HI	GCNGC	9 cut(s)	684, 1524, 1541, 1552, 1944, 2052, 2946, 2997, 3072
FspBI	CTAG	7 cut(s)	195, 201, 440, 582, 1674, 2015, 2483
GlaI	GCGC	1 cut(s)	2575
GluI	GCNGC	9 cut(s)	684, 1524, 1541, 1552, 1944, 2052, 2946, 2997, 3072
GsaI	CCCAGC	2 cut(s)	1302, 1917
HapII	CCGG	1 cut(s)	1509
HhaI	GCGC	1 cut(s)	2576
Hin6I	GCGC	1 cut(s)	2574
HinP1I	GCGC	1 cut(s)	2574
HindIII	AAGCTT	2 cut(s)	569, 989
HpaII	CCGG	1 cut(s)	1509
HphI	GGTGA	4 cut(s)	927, 1661, 2996, 3116
Hpy188I	TCNGA	8 cut(s)	963, 1007, 1122, 1810, 2098, 2452, 2558, 2703
Hpy188III	TCNNGA	6 cut(s)	1253, 1853, 2032, 2494, 2801, 3147
Hpy99I	CGWCG	1 cut(s)	418
HpyCH4III	ACNGT	6 cut(s)	776, 1061, 1338, 1786, 1901, 2553
HpyCH4IV	ACGT	5 cut(s)	845, 1814, 1895, 2632, 3053
HpyF10VI	GCNNNNNNNGC	9 cut(s)	309, 449, 1352, 1404, 1628, 2573, 2744, 2818, 2885
HpySE526I	ACGT	5 cut(s)	845, 1814, 1895, 2632, 3053
HspAI	GCGC	1 cut(s)	2574
Ksp22I	TGATCA	3 cut(s)	700, 2286, 2803
Kzo9I	GATC	8 cut(s)	700, 1170, 1428, 2164, 2286, 2413, 2698, 2803
LmnI	GCTCC	2 cut(s)	1628, 2681
Lsp1109I	GCAGC	9 cut(s)	695, 1510, 1552, 1563, 1930, 2038, 2932, 2983, 3058
LweI	GCATC	5 cut(s)	479, 1609, 2585, 2781, 2847
MaeI	CTAG	7 cut(s)	195, 201, 440, 582, 1674, 2015, 2483
MaeII	ACGT	5 cut(s)	845, 1814, 1895, 2632, 3053
MalI	GATC	8 cut(s)	702, 1172, 1430, 2166, 2288, 2415, 2700, 2805
MboI	GATC	8 cut(s)	700, 1170, 1428, 2164, 2286, 2413, 2698, 2803
MfeI	CAATTG	3 cut(s)	245, 652, 3185
MflI	RGATCY	1 cut(s)	1428
MhlI	GDGCHC	2 cut(s)	975, 1278
MlsI	TGGCCA	4 cut(s)	896, 1455, 2370, 2606
MluNI	TGGCCA	4 cut(s)	896, 1455, 2370, 2606
MlyI	GAGTC	6 cut(s)	53, 206, 251, 1002, 1847, 2357
MmeI	TCCRAC	1 cut(s)	2855
Mox20I	TGGCCA	4 cut(s)	896, 1455, 2370, 2606
Mph1103I	ATGCAT	1 cut(s)	2862
MroXI	GAANNNNTTC	1 cut(s)	113
MscI	TGGCCA	4 cut(s)	896, 1455, 2370, 2606
MslI	CAYNNNNRTG	2 cut(s)	475, 2925
Msp20I	TGGCCA	4 cut(s)	896, 1455, 2370, 2606
MspI	CCGG	1 cut(s)	1509
MspR9I	CCNGG	4 cut(s)	138, 220, 1238, 1510
MunI	CAATTG	3 cut(s)	245, 652, 3185
Mva1269I	GAATGC	3 cut(s)	1131, 1764, 2823
MvaI	CCWGG	3 cut(s)	138, 220, 1238
MvnI	CGCG	1 cut(s)	2574
MwoI	GCNNNNNNNGC	9 cut(s)	309, 449, 1352, 1404, 1628, 2573, 2744, 2818, 2885
NciI	CCSGG	1 cut(s)	1510
NdeI	CATATG	2 cut(s)	705, 1545
NdeII	GATC	8 cut(s)	700, 1170, 1428, 2164, 2286, 2413, 2698, 2803
NlaIV	GGNNCC	2 cut(s)	1514, 2186
NmuCI	GTSAC	4 cut(s)	45, 2321, 2719, 2729
NsiI	ATGCAT	1 cut(s)	2862
NspI	RCATGY	6 cut(s)	751, 1316, 1479, 2265, 2322, 2812
NspV	TTCGAA	1 cut(s)	2815
PaeI	GCATGC	1 cut(s)	2265
PagI	TCATGA	1 cut(s)	2493
PceI	AGGCCT	1 cut(s)	2970
PciI	ACATGT	3 cut(s)	1312, 1475, 2318
PctI	GAATGC	3 cut(s)	1131, 1764, 2823
PdmI	GAANNNNTTC	1 cut(s)	113
PfeI	GAWTC	6 cut(s)	436, 1208, 1249, 1287, 1444, 2497
PflMI	CCANNNNNTGG	1 cut(s)	92
PfoI	TCCNGGA	1 cut(s)	1236
PkrI	GCNGC	9 cut(s)	685, 1525, 1542, 1553, 1945, 2053, 2947, 2998, 3073
PleI	GAGTC	6 cut(s)	52, 206, 251, 1002, 1846, 2356
PpsI	GAGTC	6 cut(s)	52, 206, 251, 1002, 1846, 2356
Ppu21I	YACGTR	2 cut(s)	846, 1896
PscI	ACATGT	3 cut(s)	1312, 1475, 2318
PshBI	ATTAAT	2 cut(s)	861, 2649
PsiI	TTATAA	2 cut(s)	639, 954
Psp6I	CCWGG	3 cut(s)	136, 218, 1236
PspFI	CCCAGC	2 cut(s)	1298, 1913
PspGI	CCWGG	3 cut(s)	136, 218, 1236
PspN4I	GGNNCC	2 cut(s)	1514, 2186
PspPI	GGNCC	3 cut(s)	457, 1234, 2185
PstI	CTGCAG	1 cut(s)	1528
PsuI	RGATCY	1 cut(s)	1428
RseI	CAYNNNNRTG	2 cut(s)	475, 2925
SatI	GCNGC	9 cut(s)	684, 1524, 1541, 1552, 1944, 2052, 2946, 2997, 3072
Sau3AI	GATC	8 cut(s)	700, 1170, 1428, 2164, 2286, 2413, 2698, 2803
Sau96I	GGNCC	3 cut(s)	457, 1234, 2185
ScaI	AGTACT	2 cut(s)	529, 1114
SchI	GAGTC	6 cut(s)	53, 206, 251, 1002, 1847, 2357
ScrFI	CCNGG	4 cut(s)	138, 220, 1238, 1510
SduI	GDGCHC	2 cut(s)	975, 1278
SfaNI	GCATC	5 cut(s)	479, 1609, 2585, 2781, 2847
SfcI	CTRYAG	3 cut(s)	30, 372, 1524
SfuI	TTCGAA	1 cut(s)	2815
SinI	GGWCC	2 cut(s)	457, 1234
SmiMI	CAYNNNNRTG	2 cut(s)	475, 2925
SmlI	CTYRAG	2 cut(s)	346, 2134
SmoI	CTYRAG	2 cut(s)	346, 2134
SnaBI	TACGTA	2 cut(s)	846, 1896
SphI	GCATGC	1 cut(s)	2265
SseBI	AGGCCT	1 cut(s)	2970
SsiI	CCGC	1 cut(s)	2572
SspMI	CTAG	7 cut(s)	195, 201, 440, 582, 1674, 2015, 2483
StuI	AGGCCT	1 cut(s)	2970
StyD4I	CCNGG	4 cut(s)	136, 218, 1236, 1508
StyI	CCWWGG	2 cut(s)	900, 1516
TaaI	ACNGT	6 cut(s)	776, 1061, 1338, 1786, 1901, 2553
TaiI	ACGT	5 cut(s)	848, 1817, 1898, 2635, 3056
TaqI	TCGA	5 cut(s)	260, 1169, 1416, 2815, 2937
TaqII	GACCGA	1 cut(s)	51
TatI	WGTACW	7 cut(s)	527, 1112, 1791, 2004, 2091, 2274, 3009
TfiI	GAWTC	6 cut(s)	436, 1208, 1249, 1287, 1444, 2497
TscAI	CASTG	5 cut(s)	54, 93, 1278, 1465, 3180
TseFI	GTSAC	4 cut(s)	45, 2321, 2719, 2729
TseI	GCWGC	9 cut(s)	683, 1523, 1540, 1551, 1943, 2051, 2945, 2996, 3071
Tsp45I	GTSAC	4 cut(s)	45, 2321, 2719, 2729
TspRI	CASTG	5 cut(s)	54, 93, 1278, 1465, 3180
Van91I	CCANNNNNTGG	1 cut(s)	92
VpaK11BI	GGWCC	2 cut(s)	457, 1234
VspI	ATTAAT	2 cut(s)	861, 2649
XagI	CCTNNNNNAGG	1 cut(s)	2888
XapI	RAATTY	6 cut(s)	110, 1742, 1828, 1980, 2559, 3151
XceI	RCATGY	6 cut(s)	751, 1316, 1479, 2265, 2322, 2812
XcmI	CCANNNNNNNNNTGG	1 cut(s)	226
XmiI	GTMKAC	4 cut(s)	422, 1163, 1696, 2627
XmnI	GAANNNNTTC	1 cut(s)	113
XspI	CTAG	7 cut(s)	195, 201, 440, 582, 1674, 2015, 2483
ZrmI	AGTACT	2 cut(s)	529, 1114
Zsp2I	ATGCAT	1 cut(s)	2862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.