Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G55840 AT5G55840 AT5G55840 |
| fragaria_vesca | FvH4_3g42930 |
| malus_domestica | MD03G1028500.v1.1 |
| prunus_persica | Prupe.6G024500_v2.0.a1 Prupe.6G024500_v2.0.a1 |
| pyrus_communis | pycom03g02310 |
| rosa_chinensis | RchiOBHm_Chr5g0076971 |
| rosa_laevigata | RLG00000036637 |
| rosa_multiflora | Rmu_sc0004655.1_g000020 |
| rosa_roxburghii | Rroxscaffold_1G00005180 |
| rosa_rugosa | Rorug05G0449800 Rorug05G0449900 |
| rosa_samantha | Rh5AG504500 Rh5BG526200 Rh5CG550100 Rh5DG538400 |
| rosa_wichuraiana | Rw5G047180 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 807, 1509, 2385 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2209 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 260 |
| AccI | GTMKAC | 3 cut(s) | 1088, 1864, 2174 |
| AccII | CGCG | 1 cut(s) | 2933 |
| AciI | CCGC | 3 cut(s) | 1297, 2112, 2940 |
| AclWI | GGATC | 5 cut(s) | 598, 1412, 1425, 1727, 2449 |
| AcoI | YGGCCR | 5 cut(s) | 1621, 1692, 1768, 2206, 2536 |
| AcsI | RAATTY | 7 cut(s) | 54, 278, 1108, 1891, 1910, 3319, 3379 |
| AcuI | CTGAAG | 1 cut(s) | 468 |
| AdeI | CACNNNGTG | 1 cut(s) | 2162 |
| AfaI | GTAC | 5 cut(s) | 258, 592, 827, 907, 1324 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 260, 440, 2215, 2374, 3058 |
| AflII | CTTAAG | 1 cut(s) | 740 |
| AflIII | ACRYGT | 3 cut(s) | 1643, 1982, 3030 |
| AjnI | CCWGG | 2 cut(s) | 304, 1404 |
| Alw21I | GWGCWC | 2 cut(s) | 448, 2917 |
| Alw26I | GTCTC | 5 cut(s) | 219, 539, 1973, 2615, 3206 |
| AlwI | GGATC | 5 cut(s) | 598, 1412, 1425, 1727, 2449 |
| Ama87I | CYCGRG | 2 cut(s) | 1068, 2302 |
| ApeKI | GCWGC | 2 cut(s) | 2219, 2355 |
| ApoI | RAATTY | 7 cut(s) | 54, 278, 1108, 1891, 1910, 3319, 3379 |
| AseI | ATTAAT | 2 cut(s) | 1029, 2817 |
| AspLEI | GCGC | 2 cut(s) | 3335, 3393 |
| AspS9I | GGNCC | 4 cut(s) | 625, 1402, 2419, 2460 |
| AsuC2I | CCSGG | 4 cut(s) | 1069, 1070, 2417, 2459 |
| AsuHPI | GGTGA | 6 cut(s) | 187, 938, 1095, 2647, 2800, 3164 |
| AsuII | TTCGAA | 2 cut(s) | 2856, 2983 |
| AvaI | CYCGRG | 2 cut(s) | 1068, 2302 |
| AvaII | GGWCC | 3 cut(s) | 625, 1402, 2419 |
| BaeGI | GKGCMC | 3 cut(s) | 2369, 2755, 3080 |
| BalI | TGGCCA | 4 cut(s) | 1623, 1770, 2208, 2538 |
| BamHI | GGATCC | 1 cut(s) | 1417 |
| BanII | GRGCYC | 2 cut(s) | 1234, 2931 |
| BauI | CACGAG | 1 cut(s) | 2423 |
| BbsI | GAAGAC | 1 cut(s) | 3379 |
| Bbv12I | GWGCWC | 2 cut(s) | 448, 2917 |
| BbvI | GCAGC | 2 cut(s) | 2206, 2367 |
| BceAI | ACGGC | 2 cut(s) | 565, 1945 |
| BciT130I | CCWGG | 2 cut(s) | 306, 1406 |
| BciVI | GTATCC | 5 cut(s) | 448, 2260, 2291, 2396, 2788 |
| BclI | TGATCA | 2 cut(s) | 868, 2581 |
| BcnI | CCSGG | 4 cut(s) | 1069, 1070, 2417, 2459 |
| BcoDI | GTCTC | 5 cut(s) | 219, 539, 1973, 2615, 3206 |
| BfaI | CTAG | 6 cut(s) | 21, 369, 608, 750, 2183, 2651 |
| BfmI | CTRYAG | 2 cut(s) | 540, 2574 |
| BfoI | RGCGCY | 1 cut(s) | 3336 |
| BfrI | CTTAAG | 1 cut(s) | 740 |
| BfuI | GTATCC | 5 cut(s) | 448, 2260, 2291, 2396, 2788 |
| BisI | GCNGC | 3 cut(s) | 2112, 2220, 2356 |
| BlsI | GCNGC | 3 cut(s) | 2113, 2221, 2357 |
| Bme1390I | CCNGG | 6 cut(s) | 306, 1069, 1070, 1406, 2417, 2459 |
| Bme18I | GGWCC | 3 cut(s) | 625, 1402, 2419 |
| BmeT110I | CYCGRG | 2 cut(s) | 1068, 2302 |
| BmgT120I | GGNCC | 4 cut(s) | 625, 1402, 2419, 2460 |
| BmiI | GGNNCC | 2 cut(s) | 1419, 2420 |
| BmrFI | CCNGG | 6 cut(s) | 306, 1069, 1070, 1406, 2417, 2459 |
| BmsI | GCATC | 3 cut(s) | 109, 2753, 3015 |
| BpiI | GAAGAC | 1 cut(s) | 3379 |
| Bpu14I | TTCGAA | 2 cut(s) | 2856, 2983 |
| BpuMI | CCSGG | 4 cut(s) | 1069, 1070, 2417, 2459 |
| BsaAI | YACGTR | 1 cut(s) | 2064 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1795 |
| BsaI | GGTCTC | 1 cut(s) | 3206 |
| BsaJI | CCNNGG | 5 cut(s) | 1068, 1624, 1771, 1927, 2790 |
| BsaWI | WCCGGW | 1 cut(s) | 2519 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 260, 440, 2215, 2374, 3058 |
| Bse1I | ACTGG | 5 cut(s) | 254, 2209, 2209, 2629, 2895 |
| Bse3DI | GCAATG | 3 cut(s) | 2901, 2964, 3372 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1795 |
| BseBI | CCWGG | 2 cut(s) | 306, 1406 |
| BseDI | CCNNGG | 5 cut(s) | 1068, 1624, 1771, 1927, 2790 |
| BseGI | GGATG | 9 cut(s) | 1305, 1351, 1414, 1837, 2115, 2313, 2536, 2744, 3331 |
| BseJI | GATNNNNATC | 1 cut(s) | 1795 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 260, 440, 2215, 2374, 3058 |
| BseMI | GCAATG | 3 cut(s) | 2901, 2964, 3372 |
| BseMII | CTCAG | 4 cut(s) | 752, 2610, 2898, 3062 |
| BseNI | ACTGG | 5 cut(s) | 254, 2209, 2209, 2629, 2895 |
| BseRI | GAGGAG | 2 cut(s) | 2365, 3197 |
| BseSI | GKGCMC | 3 cut(s) | 2369, 2755, 3080 |
| BseXI | GCAGC | 2 cut(s) | 2206, 2367 |
| BseYI | CCCAGC | 3 cut(s) | 635, 1466, 2081 |
| Bsh1236I | CGCG | 1 cut(s) | 2933 |
| BsiHKAI | GWGCWC | 2 cut(s) | 448, 2917 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1068, 2302 |
| BsiSI | CCGG | 5 cut(s) | 1069, 2092, 2416, 2458, 2520 |
| BslFI | GGGAC | 4 cut(s) | 1215, 2432, 3095, 3318 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 260, 440, 2215, 2374, 3058 |
| BsmAI | GTCTC | 5 cut(s) | 219, 539, 1973, 2615, 3206 |
| BsmFI | GGGAC | 4 cut(s) | 1215, 2432, 3095, 3318 |
| BsmI | GAATGC | 5 cut(s) | 1299, 1932, 2852, 3092, 3367 |
| Bso31I | GGTCTC | 1 cut(s) | 3206 |
| BsoBI | CYCGRG | 2 cut(s) | 1068, 2302 |
| Bsp119I | TTCGAA | 2 cut(s) | 2856, 2983 |
| Bsp1286I | GDGCHC | 7 cut(s) | 448, 1234, 2369, 2755, 2917, 2931, 3080 |
| Bsp1407I | TGTACA | 1 cut(s) | 905 |
| Bsp143I | GATC | 9 cut(s) | 603, 868, 1338, 1417, 1732, 2454, 2581, 2866, 2971 |
| Bsp19I | CCATGG | 2 cut(s) | 1624, 1771 |
| Bsp68I | TCGCGA | 1 cut(s) | 2933 |
| BspACI | CCGC | 3 cut(s) | 1297, 2112, 2940 |
| BspCNI | CTCAG | 4 cut(s) | 753, 2611, 2899, 3063 |
| BspFNI | CGCG | 1 cut(s) | 2933 |
| BspHI | TCATGA | 1 cut(s) | 2286 |
| BspLI | GGNNCC | 2 cut(s) | 1419, 2420 |
| BspPI | GGATC | 5 cut(s) | 598, 1412, 1425, 1727, 2449 |
| BspQI | GCTCTTC | 1 cut(s) | 170 |
| BspT104I | TTCGAA | 2 cut(s) | 2856, 2983 |
| BspTI | CTTAAG | 1 cut(s) | 740 |
| BspTNI | GGTCTC | 1 cut(s) | 3206 |
| BsrDI | GCAATG | 3 cut(s) | 2901, 2964, 3372 |
| BsrGI | TGTACA | 1 cut(s) | 905 |
| BsrI | ACTGG | 5 cut(s) | 254, 2209, 2209, 2629, 2895 |
| BssECI | CCNNGG | 5 cut(s) | 1068, 1624, 1771, 1927, 2790 |
| BssMI | GATC | 9 cut(s) | 603, 868, 1338, 1417, 1732, 2454, 2581, 2866, 2971 |
| BssNAI | GTATAC | 2 cut(s) | 1865, 2175 |
| BssSI | CACGAG | 1 cut(s) | 2423 |
| BssT1I | CCWWGG | 3 cut(s) | 1624, 1771, 2790 |
| Bst1107I | GTATAC | 2 cut(s) | 1865, 2175 |
| Bst2BI | CACGAG | 1 cut(s) | 2423 |
| Bst2UI | CCWGG | 2 cut(s) | 306, 1406 |
| Bst4CI | ACNGT | 7 cut(s) | 206, 969, 1637, 1954, 2272, 2337, 2593 |
| Bst6I | CTCTTC | 2 cut(s) | 170, 2232 |
| BstAFI | CTTAAG | 1 cut(s) | 740 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 409, 2364, 2750 |
| BstAUI | TGTACA | 1 cut(s) | 905 |
| BstBAI | YACGTR | 1 cut(s) | 2064 |
| BstBI | TTCGAA | 2 cut(s) | 2856, 2983 |
| BstC8I | GCNNGC | 6 cut(s) | 270, 669, 1257, 1516, 2931, 2978 |
| BstDEI | CTNAG | 8 cut(s) | 248, 761, 882, 1205, 2214, 2619, 2907, 3071 |
| BstDSI | CCRYGG | 3 cut(s) | 1624, 1771, 1927 |
| BstEII | GGTNACC | 1 cut(s) | 1009 |
| BstF5I | GGATG | 9 cut(s) | 1305, 1351, 1414, 1837, 2115, 2313, 2536, 2744, 3331 |
| BstFNI | CGCG | 1 cut(s) | 2933 |
| BstH2I | RGCGCY | 1 cut(s) | 3336 |
| BstHHI | GCGC | 2 cut(s) | 3335, 3393 |
| BstKTI | GATC | 9 cut(s) | 606, 871, 1341, 1420, 1735, 2457, 2584, 2869, 2974 |
| BstMAI | GTCTC | 5 cut(s) | 219, 539, 1973, 2615, 3206 |
| BstMBI | GATC | 9 cut(s) | 603, 868, 1338, 1417, 1732, 2454, 2581, 2866, 2971 |
| BstNI | CCWGG | 2 cut(s) | 306, 1406 |
| BstNSI | RCATGY | 8 cut(s) | 919, 1259, 1484, 1647, 1986, 2602, 2980, 3034 |
| BstPI | GGTNACC | 1 cut(s) | 1009 |
| BstSCI | CCNGG | 6 cut(s) | 304, 1067, 1068, 1404, 2415, 2457 |
| BstSFI | CTRYAG | 2 cut(s) | 540, 2574 |
| BstSLI | GKGCMC | 3 cut(s) | 2369, 2755, 3080 |
| BstSNI | TACGTA | 1 cut(s) | 2064 |
| BstUI | CGCG | 1 cut(s) | 2933 |
| BstV1I | GCAGC | 2 cut(s) | 2206, 2367 |
| BstV2I | GAAGAC | 1 cut(s) | 3379 |
| BstX2I | RGATCY | 1 cut(s) | 1417 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 635 |
| BstYI | RGATCY | 1 cut(s) | 1417 |
| BstZ17I | GTATAC | 2 cut(s) | 1865, 2175 |
| BsuI | GTATCC | 5 cut(s) | 448, 2260, 2291, 2396, 2788 |
| BtgI | CCRYGG | 3 cut(s) | 1624, 1771, 1927 |
| BtsCI | GGATG | 9 cut(s) | 1305, 1351, 1414, 1837, 2115, 2313, 2536, 2744, 3331 |
| BtsI | GCAGTG | 1 cut(s) | 3063 |
| BtsIMutI | CAGTG | 2 cut(s) | 2902, 3063 |
| BtuMI | TCGCGA | 1 cut(s) | 2933 |
| Cac8I | GCNNGC | 6 cut(s) | 270, 669, 1257, 1516, 2931, 2978 |
| CciI | TCATGA | 1 cut(s) | 2286 |
| CfoI | GCGC | 2 cut(s) | 3335, 3393 |
| Cfr13I | GGNCC | 4 cut(s) | 625, 1402, 2419, 2460 |
| Cfr9I | CCCGGG | 1 cut(s) | 1068 |
| CseI | GACGC | 1 cut(s) | 1697 |
| CsiI | ACCWGGT | 1 cut(s) | 304 |
| Csp6I | GTAC | 5 cut(s) | 257, 591, 826, 906, 1323 |
| CviQI | GTAC | 5 cut(s) | 257, 591, 826, 906, 1323 |
| DdeI | CTNAG | 8 cut(s) | 248, 761, 882, 1205, 2214, 2619, 2907, 3071 |
| DpnI | GATC | 9 cut(s) | 605, 870, 1340, 1419, 1734, 2456, 2583, 2868, 2973 |
| DpnII | GATC | 9 cut(s) | 603, 868, 1338, 1417, 1732, 2454, 2581, 2866, 2971 |
| DraIII | CACNNNGTG | 1 cut(s) | 2162 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2209 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2209 |
| EaeI | YGGCCR | 5 cut(s) | 1621, 1692, 1768, 2206, 2536 |
| Eam1104I | CTCTTC | 2 cut(s) | 170, 2232 |
| EarI | CTCTTC | 2 cut(s) | 170, 2232 |
| Eco105I | TACGTA | 1 cut(s) | 2064 |
| Eco130I | CCWWGG | 3 cut(s) | 1624, 1771, 2790 |
| Eco147I | AGGCCT | 2 cut(s) | 2642, 3138 |
| Eco24I | GRGCYC | 2 cut(s) | 1234, 2931 |
| Eco31I | GGTCTC | 1 cut(s) | 3206 |
| Eco32I | GATATC | 1 cut(s) | 3312 |
| Eco47I | GGWCC | 3 cut(s) | 625, 1402, 2419 |
| Eco57I | CTGAAG | 1 cut(s) | 468 |
| Eco88I | CYCGRG | 2 cut(s) | 1068, 2302 |
| Eco91I | GGTNACC | 1 cut(s) | 1009 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2419 |
| EcoO65I | GGTNACC | 1 cut(s) | 1009 |
| EcoRII | CCWGG | 2 cut(s) | 304, 1404 |
| EcoRV | GATATC | 1 cut(s) | 3312 |
| EcoT14I | CCWWGG | 3 cut(s) | 1624, 1771, 2790 |
| EcoT38I | GRGCYC | 2 cut(s) | 1234, 2931 |
| ErhI | CCWWGG | 3 cut(s) | 1624, 1771, 2790 |
| FaqI | GGGAC | 4 cut(s) | 1215, 2432, 3095, 3318 |
| FauI | CCCGC | 1 cut(s) | 2933 |
| FauNDI | CATATG | 2 cut(s) | 1713, 1855 |
| FbaI | TGATCA | 2 cut(s) | 868, 2581 |
| FblI | GTMKAC | 3 cut(s) | 1088, 1864, 2174 |
| Fnu4HI | GCNGC | 3 cut(s) | 2112, 2220, 2356 |
| FokI | GGATG | 9 cut(s) | 1312, 1358, 1421, 1824, 2102, 2320, 2543, 2731, 3338 |
| FriOI | GRGCYC | 2 cut(s) | 1234, 2931 |
| Fsp4HI | GCNGC | 3 cut(s) | 2112, 2220, 2356 |
| FspBI | CTAG | 6 cut(s) | 21, 369, 608, 750, 2183, 2651 |
| GlaI | GCGC | 2 cut(s) | 3334, 3392 |
| GluI | GCNGC | 3 cut(s) | 2112, 2220, 2356 |
| GsaI | CCCAGC | 3 cut(s) | 639, 1470, 2085 |
| HaeII | RGCGCY | 1 cut(s) | 3336 |
| HapII | CCGG | 5 cut(s) | 1069, 2092, 2416, 2458, 2520 |
| HgaI | GACGC | 1 cut(s) | 1697 |
| HhaI | GCGC | 2 cut(s) | 3335, 3393 |
| Hin6I | GCGC | 2 cut(s) | 3333, 3391 |
| HinP1I | GCGC | 2 cut(s) | 3333, 3391 |
| HincII | GTYRAC | 1 cut(s) | 2596 |
| HindII | GTYRAC | 1 cut(s) | 2596 |
| HindIII | AAGCTT | 4 cut(s) | 737, 1157, 1167, 3101 |
| HinfI | GANTC | 7 cut(s) | 212, 380, 1140, 1612, 1739, 2516, 2665 |
| HpaI | GTTAAC | 1 cut(s) | 2596 |
| HpaII | CCGG | 5 cut(s) | 1069, 2092, 2416, 2458, 2520 |
| HphI | GGTGA | 6 cut(s) | 187, 938, 1095, 2647, 2800, 3164 |
| Hpy166II | GTNNAC | 7 cut(s) | 29, 585, 1089, 1139, 1865, 2175, 2596 |
| Hpy188I | TCNGA | 8 cut(s) | 68, 219, 450, 762, 1175, 2620, 2726, 3298 |
| Hpy8I | GTNNAC | 7 cut(s) | 29, 585, 1089, 1139, 1865, 2175, 2596 |
| HpyCH4III | ACNGT | 7 cut(s) | 206, 969, 1637, 1954, 2272, 2337, 2593 |
| HpyCH4IV | ACGT | 4 cut(s) | 698, 900, 2063, 2700 |
| HpyF3I | CTNAG | 8 cut(s) | 248, 761, 882, 1205, 2214, 2619, 2907, 3071 |
| HpySE526I | ACGT | 4 cut(s) | 698, 900, 2063, 2700 |
| HspAI | GCGC | 2 cut(s) | 3333, 3391 |
| Ksp22I | TGATCA | 2 cut(s) | 868, 2581 |
| KspAI | GTTAAC | 1 cut(s) | 2596 |
| Kzo9I | GATC | 9 cut(s) | 603, 868, 1338, 1417, 1732, 2454, 2581, 2866, 2971 |
| LguI | GCTCTTC | 1 cut(s) | 170 |
| LmnI | GCTCC | 2 cut(s) | 2352, 2849 |
| Lsp1109I | GCAGC | 2 cut(s) | 2206, 2367 |
| LweI | GCATC | 3 cut(s) | 109, 2753, 3015 |
| MabI | ACCWGGT | 1 cut(s) | 304 |
| MaeI | CTAG | 6 cut(s) | 21, 369, 608, 750, 2183, 2651 |
| MaeII | ACGT | 4 cut(s) | 698, 900, 2063, 2700 |
| MaeIII | GTNAC | 9 cut(s) | 343, 1009, 1114, 1646, 1744, 2146, 2670, 2887, 2897 |
| MalI | GATC | 9 cut(s) | 605, 870, 1340, 1419, 1734, 2456, 2583, 2868, 2973 |
| MboI | GATC | 9 cut(s) | 603, 868, 1338, 1417, 1732, 2454, 2581, 2866, 2971 |
| MfeI | CAATTG | 2 cut(s) | 286, 820 |
| MflI | RGATCY | 1 cut(s) | 1417 |
| MhlI | GDGCHC | 7 cut(s) | 448, 1234, 2369, 2755, 2917, 2931, 3080 |
| MlsI | TGGCCA | 4 cut(s) | 1623, 1770, 2208, 2538 |
| MluNI | TGGCCA | 4 cut(s) | 1623, 1770, 2208, 2538 |
| MlyI | GAGTC | 4 cut(s) | 221, 374, 1134, 2525 |
| MmeI | TCCRAC | 4 cut(s) | 1865, 2508, 2751, 3023 |
| Mox20I | TGGCCA | 4 cut(s) | 1623, 1770, 2208, 2538 |
| MscI | TGGCCA | 4 cut(s) | 1623, 1770, 2208, 2538 |
| MslI | CAYNNNNRTG | 1 cut(s) | 167 |
| Msp20I | TGGCCA | 4 cut(s) | 1623, 1770, 2208, 2538 |
| MspCI | CTTAAG | 1 cut(s) | 740 |
| MspI | CCGG | 5 cut(s) | 1069, 2092, 2416, 2458, 2520 |
| MspR9I | CCNGG | 6 cut(s) | 306, 1069, 1070, 1406, 2417, 2459 |
| MunI | CAATTG | 2 cut(s) | 286, 820 |
| Mva1269I | GAATGC | 5 cut(s) | 1299, 1932, 2852, 3092, 3367 |
| MvaI | CCWGG | 2 cut(s) | 306, 1406 |
| MvnI | CGCG | 1 cut(s) | 2933 |
| NciI | CCSGG | 4 cut(s) | 1069, 1070, 2417, 2459 |
| NcoI | CCATGG | 2 cut(s) | 1624, 1771 |
| NdeI | CATATG | 2 cut(s) | 1713, 1855 |
| NdeII | GATC | 9 cut(s) | 603, 868, 1338, 1417, 1732, 2454, 2581, 2866, 2971 |
| NlaIV | GGNNCC | 2 cut(s) | 1419, 2420 |
| NmuCI | GTSAC | 2 cut(s) | 2146, 2897 |
| NruI | TCGCGA | 1 cut(s) | 2933 |
| NspI | RCATGY | 8 cut(s) | 919, 1259, 1484, 1647, 1986, 2602, 2980, 3034 |
| NspV | TTCGAA | 2 cut(s) | 2856, 2983 |
| PacI | TTAATTAA | 1 cut(s) | 2817 |
| PaeI | GCATGC | 2 cut(s) | 1259, 2980 |
| PaeR7I | CTCGAG | 1 cut(s) | 2302 |
| PagI | TCATGA | 1 cut(s) | 2286 |
| PceI | AGGCCT | 2 cut(s) | 2642, 3138 |
| PciI | ACATGT | 3 cut(s) | 1643, 1982, 3030 |
| PciSI | GCTCTTC | 1 cut(s) | 170 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2980 |
| PctI | GAATGC | 5 cut(s) | 1299, 1932, 2852, 3092, 3367 |
| PfeI | GAWTC | 3 cut(s) | 1612, 1739, 2665 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 260 |
| PfoI | TCCNGGA | 1 cut(s) | 1404 |
| PkrI | GCNGC | 3 cut(s) | 2113, 2221, 2357 |
| PleI | GAGTC | 4 cut(s) | 220, 374, 1134, 2524 |
| PpsI | GAGTC | 4 cut(s) | 220, 374, 1134, 2524 |
| Ppu21I | YACGTR | 1 cut(s) | 2064 |
| PpuMI | RGGWCCY | 1 cut(s) | 2419 |
| PscI | ACATGT | 3 cut(s) | 1643, 1982, 3030 |
| PshBI | ATTAAT | 2 cut(s) | 1029, 2817 |
| PsiI | TTATAA | 3 cut(s) | 807, 1509, 2385 |
| Psp5II | RGGWCCY | 1 cut(s) | 2419 |
| Psp6I | CCWGG | 2 cut(s) | 304, 1404 |
| PspEI | GGTNACC | 1 cut(s) | 1009 |
| PspFI | CCCAGC | 3 cut(s) | 635, 1466, 2081 |
| PspGI | CCWGG | 2 cut(s) | 304, 1404 |
| PspN4I | GGNNCC | 2 cut(s) | 1419, 2420 |
| PspPI | GGNCC | 4 cut(s) | 625, 1402, 2419, 2460 |
| PspPPI | RGGWCCY | 1 cut(s) | 2419 |
| PspXI | VCTCGAGB | 1 cut(s) | 2302 |
| PsuI | RGATCY | 1 cut(s) | 1417 |
| RruI | TCGCGA | 1 cut(s) | 2933 |
| RsaI | GTAC | 5 cut(s) | 258, 592, 827, 907, 1324 |
| RsaNI | GTAC | 5 cut(s) | 257, 591, 826, 906, 1323 |
| RseI | CAYNNNNRTG | 1 cut(s) | 167 |
| SapI | GCTCTTC | 1 cut(s) | 170 |
| SatI | GCNGC | 3 cut(s) | 2112, 2220, 2356 |
| Sau3AI | GATC | 9 cut(s) | 603, 868, 1338, 1417, 1732, 2454, 2581, 2866, 2971 |
| Sau96I | GGNCC | 4 cut(s) | 625, 1402, 2419, 2460 |
| SchI | GAGTC | 4 cut(s) | 221, 374, 1134, 2525 |
| ScrFI | CCNGG | 6 cut(s) | 306, 1069, 1070, 1406, 2417, 2459 |
| SduI | GDGCHC | 7 cut(s) | 448, 1234, 2369, 2755, 2917, 2931, 3080 |
| SexAI | ACCWGGT | 1 cut(s) | 304 |
| SfaNI | GCATC | 3 cut(s) | 109, 2753, 3015 |
| SfcI | CTRYAG | 2 cut(s) | 540, 2574 |
| Sfr274I | CTCGAG | 1 cut(s) | 2302 |
| SfuI | TTCGAA | 2 cut(s) | 2856, 2983 |
| SinI | GGWCC | 3 cut(s) | 625, 1402, 2419 |
| SlaI | CTCGAG | 1 cut(s) | 2302 |
| SmaI | CCCGGG | 1 cut(s) | 1070 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 167 |
| SmlI | CTYRAG | 2 cut(s) | 740, 2302 |
| SmoI | CTYRAG | 2 cut(s) | 740, 2302 |
| SnaBI | TACGTA | 1 cut(s) | 2064 |
| SphI | GCATGC | 2 cut(s) | 1259, 2980 |
| SseBI | AGGCCT | 2 cut(s) | 2642, 3138 |
| SsiI | CCGC | 3 cut(s) | 1297, 2112, 2940 |
| SspI | AATATT | 2 cut(s) | 1021, 2389 |
| SspMI | CTAG | 6 cut(s) | 21, 369, 608, 750, 2183, 2651 |
| StuI | AGGCCT | 2 cut(s) | 2642, 3138 |
| StyD4I | CCNGG | 6 cut(s) | 304, 1067, 1068, 1404, 2415, 2457 |
| StyI | CCWWGG | 3 cut(s) | 1624, 1771, 2790 |
| TaaI | ACNGT | 7 cut(s) | 206, 969, 1637, 1954, 2272, 2337, 2593 |
| TaiI | ACGT | 4 cut(s) | 701, 903, 2066, 2703 |
| TaqI | TCGA | 6 cut(s) | 364, 2187, 2303, 2408, 2856, 2983 |
| TatI | WGTACW | 4 cut(s) | 256, 590, 905, 1322 |
| TauI | GCSGC | 1 cut(s) | 2114 |
| TfiI | GAWTC | 3 cut(s) | 1612, 1739, 2665 |
| TscAI | CASTG | 2 cut(s) | 2902, 3063 |
| TseFI | GTSAC | 2 cut(s) | 2146, 2897 |
| TseI | GCWGC | 2 cut(s) | 2219, 2355 |
| Tsp45I | GTSAC | 2 cut(s) | 2146, 2897 |
| TspGWI | ACGGA | 1 cut(s) | 1732 |
| TspMI | CCCGGG | 1 cut(s) | 1068 |
| TspRI | CASTG | 2 cut(s) | 2902, 3063 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 260 |
| Vha464I | CTTAAG | 1 cut(s) | 740 |
| VpaK11BI | GGWCC | 3 cut(s) | 625, 1402, 2419 |
| VspI | ATTAAT | 2 cut(s) | 1029, 2817 |
| XapI | RAATTY | 7 cut(s) | 54, 278, 1108, 1891, 1910, 3319, 3379 |
| XceI | RCATGY | 8 cut(s) | 919, 1259, 1484, 1647, 1986, 2602, 2980, 3034 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 394, 3055 |
| XhoI | CTCGAG | 1 cut(s) | 2302 |
| XmaI | CCCGGG | 1 cut(s) | 1068 |
| XmiI | GTMKAC | 3 cut(s) | 1088, 1864, 2174 |
| XspI | CTAG | 6 cut(s) | 21, 369, 608, 750, 2183, 2651 |