Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0012309

Physical Location & Seq

Genomic Coordinates Forward (+)

62317874 .. 62322194

Gene Structure 4321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0449800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGGTCCTGTGAGGGGTCTTAAGAAGAGAAAGAAGGCAGAGAAGAACAAGTCTCATGAAGATCAAAATGCTTCTGGTTCTGGGTCCTCAGAGAAGGAAGGTCCTTTGGATTGGTGGGATGAGTTCTCCAAGAGAATCAATGGTCTTCAGTCTCCAGCAAAGGGTTTAAGTAGGTTTCAATCTATCTTTAAGATGTCCAGAAAAACCTTTGACTACATATGCTCACTTGTGAGTGAAGAAATGATGGCTAAGTCAGCACATTTTGTGTTTAATAATGGTACGCCATTGTCTTTATATGATCAAGTAGCTGTGGCTTTAAGAAGACTGAGCTCTGGTGAGTCACTAGTAATGATCGGCGATTCATTTGGGCTGAACCACTCTGCCGTGTCTCAAGTGACCTGGCGATTTGTGGAAGCCATGGAACAAAAGGGACTTCACCACCTGCAATGGCCTTCAACTGAAGCAGAAATGGCAGAAATCAAATTGAAATTTCAGAAAATGCAAGGGTTTCCTAATTGTTGTGGTGCTGTTGATACTACTCACATCATGATGTGTTTACCAGCTTCAGACCCCACAAGCAATGCATGGCTCGATCAAGAGAAGAATTACAGCATGGTCTTGCAGGCCATTGTGGACCCGGACATGAGGTTCCGGGACATAATCACCGGATGGCCAGGGAAAATGAAGGACTGGTTGGTGTTTCAGAGTTCTAAGTTTCATGAACTCTGTGATAAAGGAGAGAGGTTGAATGGGAAAGTTTTAGAGCTCTCCAAAGGATTTGATATAAGGGAATACATAATTGGGGATTCAGGCTTTCCTTTACTGCCTTATCTTGTAATCCCCTATGAAGGGAAAGAACTCCCAGAACAAAAAGATGAGTTCAATAAGCAGCAGCGTGCTACCCAAATGGTGGCACAGAGAGCATTAGCAAGGTTGAAGGACTCATGGAGGATCATCGAAGGTGTGATGTGGAGACCTGACAAACACAGATTGCCGAGGATTATTCTCGTTTGCTGCTTGCTTCATAACATTGTCATCGACATGGAAGATGAAGTGCTGGATCACCTGCCTTTGTCTCACAACCATGATGACTCGGCTTACCACCAACAGATTTGTGGAACTCTTGACATAAATGGTGTTCATCTCAGAGATAAGCTGTCTCTCTACTTGTCTGGAAGGATGCCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

396

Amino Acids

45.19

Weight (kDa)

6.92

Isoelectric Point (pI)

43.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_tran	PF04827	159 - 351	1.5e-10	Plant transposon protein
DDE_Tnp_4	PF13359	177 - 343	6.4e-27	DDE superfamily endonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55840 AT5G55840 AT5G55840
fragaria_vesca	FvH4_3g42930
malus_domestica	MD03G1028500.v1.1
prunus_persica	Prupe.6G024500_v2.0.a1 Prupe.6G024500_v2.0.a1
pyrus_communis	pycom03g02310
rosa_chinensis	RchiOBHm_Chr5g0076971
rosa_laevigata	RLG00000036637
rosa_multiflora	Rmu_sc0004655.1_g000020
rosa_roxburghii	Rroxscaffold_1G00005180
rosa_rugosa	Rorug05G0449800 Rorug05G0449900
rosa_samantha	Rh5AG504500 Rh5BG526200 Rh5CG550100 Rh5DG538400
rosa_wichuraiana	Rw5G047180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	450, 1074
Acc36I	ACCTGC	2 cut(s)	450, 1074
AccB7I	CCANNNNNTGG	1 cut(s)	910
AclWI	GGATC	2 cut(s)	959, 1068
AcoI	YGGCCR	1 cut(s)	671
AcsI	RAATTY	1 cut(s)	488
AcuI	CTGAAG	3 cut(s)	131, 480, 549
AfaI	GTAC	1 cut(s)	280
AfiI	CCNNNNNNNGG	5 cut(s)	14, 161, 848, 849, 910
AflII	CTTAAG	1 cut(s)	20
AgsI	TTSAA	6 cut(s)	179, 456, 487, 748, 883, 937
AhlI	ACTAGT	1 cut(s)	343
AjnI	CCWGG	2 cut(s)	398, 673
AjuI	GAANNNNNNNTTGG	4 cut(s)	677, 709, 783, 815
AloI	GAACNNNNNNTCC	2 cut(s)	632, 664
AluBI	AGCT	5 cut(s)	308, 330, 563, 766, 1156
AluI	AGCT	5 cut(s)	308, 330, 563, 766, 1156
Alw21I	GWGCWC	2 cut(s)	332, 768
Alw26I	GTCTC	6 cut(s)	57, 156, 393, 967, 1080, 1164
AlwI	GGATC	2 cut(s)	959, 1068
AoxI	GGCC	3 cut(s)	449, 624, 671
ApeKI	GCWGC	3 cut(s)	889, 892, 1014
ApoI	RAATTY	1 cut(s)	488
AspS9I	GGNCC	4 cut(s)	5, 84, 101, 634
AsuC2I	CCSGG	2 cut(s)	638, 653
AsuHPI	GGTGA	4 cut(s)	347, 428, 655, 1055
AvaII	GGWCC	4 cut(s)	5, 84, 101, 634
BalI	TGGCCA	1 cut(s)	673
BanII	GRGCYC	2 cut(s)	332, 768
BbsI	GAAGAC	2 cut(s)	137, 328
Bbv12I	GWGCWC	2 cut(s)	332, 768
BbvI	GCAGC	3 cut(s)	901, 904, 1001
BccI	CCATC	2 cut(s)	238, 663
BceAI	ACGGC	1 cut(s)	368
BciT130I	CCWGG	2 cut(s)	400, 675
BclI	TGATCA	1 cut(s)	298
BcnI	CCSGG	2 cut(s)	638, 653
BcoDI	GTCTC	6 cut(s)	57, 156, 393, 967, 1080, 1164
BcuI	ACTAGT	1 cut(s)	343
BfaI	CTAG	1 cut(s)	344
BfrI	CTTAAG	1 cut(s)	20
BfuAI	ACCTGC	2 cut(s)	450, 1074
BisI	GCNGC	3 cut(s)	890, 893, 1015
BlsI	GCNGC	3 cut(s)	891, 894, 1016
Bme1390I	CCNGG	4 cut(s)	400, 638, 653, 675
Bme18I	GGWCC	4 cut(s)	5, 84, 101, 634
BmgT120I	GGNCC	4 cut(s)	5, 84, 101, 634
BmiI	GGNNCC	4 cut(s)	6, 85, 636, 650
BmrFI	CCNGG	4 cut(s)	400, 638, 653, 675
BmsI	GCATC	1 cut(s)	1170
BpiI	GAAGAC	2 cut(s)	137, 328
BpmI	CTGGAG	1 cut(s)	138
BpuEI	CTTGAG	1 cut(s)	375
BpuMI	CCSGG	2 cut(s)	638, 653
BsaI	GGTCTC	1 cut(s)	967
BsaJI	CCNNGG	3 cut(s)	417, 674, 995
BsaWI	WCCGGW	1 cut(s)	665
Bsc4I	CCNNNNNNNGG	5 cut(s)	14, 161, 848, 849, 910
Bse1I	ACTGG	1 cut(s)	695
Bse3DI	GCAATG	2 cut(s)	452, 586
BseBI	CCWGG	2 cut(s)	400, 675
BseDI	CCNNGG	3 cut(s)	417, 674, 995
BseGI	GGATG	3 cut(s)	124, 674, 1185
BseLI	CCNNNNNNNGG	5 cut(s)	14, 161, 848, 849, 910
BseMI	GCAATG	2 cut(s)	452, 586
BseMII	CTCAG	3 cut(s)	102, 317, 1159
BseNI	ACTGG	1 cut(s)	695
BseXI	GCAGC	3 cut(s)	901, 904, 1001
BshFI	GGCC	3 cut(s)	451, 626, 673
BsiHKAI	GWGCWC	2 cut(s)	332, 768
BsiSI	CCGG	3 cut(s)	638, 652, 666
BslFI	GGGAC	2 cut(s)	444, 668
BslI	CCNNNNNNNGG	5 cut(s)	14, 161, 848, 849, 910
BsmAI	GTCTC	6 cut(s)	57, 156, 393, 967, 1080, 1164
BsmFI	GGGAC	2 cut(s)	444, 668
BsnI	GGCC	3 cut(s)	451, 626, 673
Bso31I	GGTCTC	1 cut(s)	967
Bsp1286I	GDGCHC	2 cut(s)	332, 768
Bsp143I	GATC	6 cut(s)	61, 298, 351, 592, 951, 1060
Bsp19I	CCATGG	1 cut(s)	417
BspANI	GGCC	3 cut(s)	451, 626, 673
BspCNI	CTCAG	3 cut(s)	101, 318, 1158
BspHI	TCATGA	3 cut(s)	55, 546, 718
BspLI	GGNNCC	4 cut(s)	6, 85, 636, 650
BspMI	ACCTGC	2 cut(s)	450, 1074
BspPI	GGATC	2 cut(s)	959, 1068
BspTI	CTTAAG	1 cut(s)	20
BspTNI	GGTCTC	1 cut(s)	967
BsrDI	GCAATG	2 cut(s)	452, 586
BsrI	ACTGG	1 cut(s)	695
BssECI	CCNNGG	3 cut(s)	417, 674, 995
BssMI	GATC	6 cut(s)	61, 298, 351, 592, 951, 1060
BssT1I	CCWWGG	1 cut(s)	417
Bst2UI	CCWGG	2 cut(s)	400, 675
Bst6I	CTCTTC	1 cut(s)	20
BstAFI	CTTAAG	1 cut(s)	20
BstC8I	GCNNGC	3 cut(s)	624, 897, 1019
BstDEI	CTNAG	5 cut(s)	88, 249, 326, 711, 1145
BstDSI	CCRYGG	1 cut(s)	417
BstF5I	GGATG	3 cut(s)	124, 674, 1185
BstKTI	GATC	6 cut(s)	64, 301, 354, 595, 954, 1063
BstMAI	GTCTC	6 cut(s)	57, 156, 393, 967, 1080, 1164
BstMBI	GATC	6 cut(s)	61, 298, 351, 592, 951, 1060
BstMWI	GCNNNNNNNGC	3 cut(s)	254, 470, 920
BstNI	CCWGG	2 cut(s)	400, 675
BstSCI	CCNGG	4 cut(s)	398, 636, 651, 673
BstV1I	GCAGC	3 cut(s)	901, 904, 1001
BstV2I	GAAGAC	2 cut(s)	137, 328
BsuRI	GGCC	3 cut(s)	451, 626, 673
BtgI	CCRYGG	1 cut(s)	417
BtsCI	GGATG	3 cut(s)	124, 674, 1185
BveI	ACCTGC	2 cut(s)	450, 1074
Cac8I	GCNNGC	3 cut(s)	624, 897, 1019
CciI	TCATGA	3 cut(s)	55, 546, 718
Cfr13I	GGNCC	4 cut(s)	5, 84, 101, 634
Csp6I	GTAC	1 cut(s)	279
CviQI	GTAC	1 cut(s)	279
DdeI	CTNAG	5 cut(s)	88, 249, 326, 711, 1145
DpnI	GATC	6 cut(s)	63, 300, 353, 594, 953, 1062
DpnII	GATC	6 cut(s)	61, 298, 351, 592, 951, 1060
EaeI	YGGCCR	1 cut(s)	671
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Ecl136II	GAGCTC	2 cut(s)	330, 766
Eco130I	CCWWGG	1 cut(s)	417
Eco24I	GRGCYC	2 cut(s)	332, 768
Eco31I	GGTCTC	1 cut(s)	967
Eco47I	GGWCC	4 cut(s)	5, 84, 101, 634
Eco53kI	GAGCTC	2 cut(s)	330, 766
Eco57I	CTGAAG	3 cut(s)	131, 480, 549
EcoICRI	GAGCTC	2 cut(s)	330, 766
EcoO109I	RGGNCCY	3 cut(s)	5, 84, 101
EcoRII	CCWGG	2 cut(s)	398, 673
EcoT14I	CCWWGG	1 cut(s)	417
EcoT22I	ATGCAT	1 cut(s)	586
EcoT38I	GRGCYC	2 cut(s)	332, 768
ErhI	CCWWGG	1 cut(s)	417
FaqI	GGGAC	2 cut(s)	444, 668
FauNDI	CATATG	1 cut(s)	218
FbaI	TGATCA	1 cut(s)	298
Fnu4HI	GCNGC	3 cut(s)	890, 893, 1015
FokI	GGATG	2 cut(s)	131, 681
FriOI	GRGCYC	2 cut(s)	332, 768
Fsp4HI	GCNGC	3 cut(s)	890, 893, 1015
FspBI	CTAG	1 cut(s)	344
GluI	GCNGC	3 cut(s)	890, 893, 1015
GsuI	CTGGAG	1 cut(s)	138
HaeIII	GGCC	3 cut(s)	451, 626, 673
HapII	CCGG	3 cut(s)	638, 652, 666
HinfI	GANTC	6 cut(s)	135, 338, 359, 806, 941, 1091
HpaII	CCGG	3 cut(s)	638, 652, 666
HphI	GGTGA	4 cut(s)	347, 428, 655, 1055
Hpy166II	GTNNAC	2 cut(s)	557, 634
Hpy188I	TCNGA	5 cut(s)	91, 495, 568, 705, 1148
Hpy188III	TCNNGA	7 cut(s)	56, 198, 547, 596, 719, 1124, 1173
Hpy8I	GTNNAC	2 cut(s)	557, 634
HpyAV	CCTTC	9 cut(s)	28, 88, 92, 462, 679, 842, 931, 953, 1170
HpyCH4V	TGCA	4 cut(s)	445, 502, 584, 622
HpyF10VI	GCNNNNNNNGC	3 cut(s)	254, 470, 920
HpyF3I	CTNAG	5 cut(s)	88, 249, 326, 711, 1145
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	6 cut(s)	61, 298, 351, 592, 951, 1060
Lsp1109I	GCAGC	3 cut(s)	901, 904, 1001
LweI	GCATC	1 cut(s)	1170
MaeI	CTAG	1 cut(s)	344
MaeIII	GTNAC	2 cut(s)	339, 394
MalI	GATC	6 cut(s)	63, 300, 353, 594, 953, 1062
MboI	GATC	6 cut(s)	61, 298, 351, 592, 951, 1060
MboII	GAAGA	8 cut(s)	37, 55, 71, 137, 248, 333, 613, 1058
MhlI	GDGCHC	2 cut(s)	332, 768
MlsI	TGGCCA	1 cut(s)	673
MluCI	AATT	5 cut(s)	482, 488, 514, 604, 798
MluNI	TGGCCA	1 cut(s)	673
MlyI	GAGTC	3 cut(s)	347, 935, 1085
MnlI	CCTC	6 cut(s)	6, 97, 639, 735, 942, 990
Mox20I	TGGCCA	1 cut(s)	673
Mph1103I	ATGCAT	1 cut(s)	586
MscI	TGGCCA	1 cut(s)	673
MseI	TTAA	6 cut(s)	21, 167, 189, 270, 317, 1189
MslI	CAYNNNNRTG	3 cut(s)	548, 1040, 1083
Msp20I	TGGCCA	1 cut(s)	673
MspCI	CTTAAG	1 cut(s)	20
MspI	CCGG	3 cut(s)	638, 652, 666
MspR9I	CCNGG	4 cut(s)	400, 638, 653, 675
MvaI	CCWGG	2 cut(s)	400, 675
MwoI	GCNNNNNNNGC	3 cut(s)	254, 470, 920
NciI	CCSGG	2 cut(s)	638, 653
NcoI	CCATGG	1 cut(s)	417
NdeI	CATATG	1 cut(s)	218
NdeII	GATC	6 cut(s)	61, 298, 351, 592, 951, 1060
NlaIV	GGNNCC	4 cut(s)	6, 85, 636, 650
NmeAIII	GCCGAG	2 cut(s)	1020, 1073
NmuCI	GTSAC	2 cut(s)	339, 394
NsiI	ATGCAT	1 cut(s)	586
PagI	TCATGA	3 cut(s)	55, 546, 718
PaqCI	CACCTGC	2 cut(s)	450, 1074
PfeI	GAWTC	3 cut(s)	135, 359, 806
PflMI	CCANNNNNTGG	1 cut(s)	910
PfoI	TCCNGGA	1 cut(s)	651
PkrI	GCNGC	3 cut(s)	891, 894, 1016
PleI	GAGTC	3 cut(s)	346, 935, 1085
PpsI	GAGTC	3 cut(s)	346, 935, 1085
PpuMI	RGGWCCY	3 cut(s)	5, 84, 101
Psp124BI	GAGCTC	2 cut(s)	332, 768
Psp5II	RGGWCCY	3 cut(s)	5, 84, 101
Psp6I	CCWGG	2 cut(s)	398, 673
PspGI	CCWGG	2 cut(s)	398, 673
PspN4I	GGNNCC	4 cut(s)	6, 85, 636, 650
PspPI	GGNCC	4 cut(s)	5, 84, 101, 634
PspPPI	RGGWCCY	3 cut(s)	5, 84, 101
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
RseI	CAYNNNNRTG	3 cut(s)	548, 1040, 1083
SacI	GAGCTC	2 cut(s)	332, 768
SaqAI	TTAA	6 cut(s)	21, 167, 189, 270, 317, 1189
SatI	GCNGC	3 cut(s)	890, 893, 1015
Sau3AI	GATC	6 cut(s)	61, 298, 351, 592, 951, 1060
Sau96I	GGNCC	4 cut(s)	5, 84, 101, 634
SchI	GAGTC	3 cut(s)	347, 935, 1085
ScrFI	CCNGG	4 cut(s)	400, 638, 653, 675
SduI	GDGCHC	2 cut(s)	332, 768
SfaNI	GCATC	1 cut(s)	1170
SinI	GGWCC	4 cut(s)	5, 84, 101, 634
SmiMI	CAYNNNNRTG	3 cut(s)	548, 1040, 1083
SmlI	CTYRAG	2 cut(s)	20, 390
SmoI	CTYRAG	2 cut(s)	20, 390
SpeI	ACTAGT	1 cut(s)	343
Sse9I	AATT	5 cut(s)	482, 488, 514, 604, 798
SspMI	CTAG	1 cut(s)	344
SstI	GAGCTC	2 cut(s)	332, 768
StyD4I	CCNGG	4 cut(s)	398, 636, 651, 673
StyI	CCWWGG	1 cut(s)	417
TaqI	TCGA	3 cut(s)	591, 957, 1038
TasI	AATT	5 cut(s)	482, 488, 514, 604, 798
TfiI	GAWTC	3 cut(s)	135, 359, 806
Tru1I	TTAA	6 cut(s)	21, 167, 189, 270, 317, 1189
Tru9I	TTAA	6 cut(s)	21, 167, 189, 270, 317, 1189
TseFI	GTSAC	2 cut(s)	339, 394
TseI	GCWGC	3 cut(s)	889, 892, 1014
Tsp45I	GTSAC	2 cut(s)	339, 394
TspDTI	ATGAA	9 cut(s)	72, 351, 698, 707, 735, 861, 1013, 1065, 1130
Van91I	CCANNNNNTGG	1 cut(s)	910
Vha464I	CTTAAG	1 cut(s)	20
VpaK11BI	GGWCC	4 cut(s)	5, 84, 101, 634
XapI	RAATTY	1 cut(s)	488
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1112
XspI	CTAG	1 cut(s)	344
Zsp2I	ATGCAT	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.