Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010944

Physical Location & Seq

Genomic Coordinates Forward (+)

23098872 .. 23099587

Gene Structure 716 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G57080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGAAGAAACCGTATAAAGGAAAGTTGCCGACGGGAACTCCGTCTCTGGCAATGTCAACACTCGTCGTCGTTGCTTCCCTTCTCGCCGGAGCCTCCGTTGTCCACAACATCTACAAACCAGATCTCAGTTTACCACCGTTGGAAAGTAGTGAAGTGGCCAAGAAGGATGATTCTGTAAACAAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

62

Amino Acids

6.52

Weight (kDa)

9.4

Isoelectric Point (pI)

43.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4516	PF14990	9 - 51	6.8e-19	Domain of unknown function (DUF4516)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26055 AT5G57080
malus_domestica	MD16G1008700.v1.1
prunus_persica	Prupe.1G341800_v2.0.a1
pyrus_communis	pycom13g00930 pycom16g00840
rosa_chinensis	RchiOBHm_Chr4g0445811 RchiOBHm_Chr4g0445941
rosa_laevigata	RLG00000005709 RLG00000034739
rosa_multiflora	Rmu_sc0003637.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386280 Rroxscaffold_5G00386300
rosa_rugosa	Rorug04G0365400
rosa_samantha	Rh4AG426800 Rh4AG427500 Rh4BG437200 Rh4CG454000 Rh4DG435100
rosa_wichuraiana	Rw4G036530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	156
AfiI	CCNNNNNNNGG	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	48
AoxI	GGCC	1 cut(s)	156
BalI	TGGCCA	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	48
BglII	AGATCT	1 cut(s)	121
BmiI	GGNNCC	1 cut(s)	91
BsaXI	ACNNNNNCTCC	4 cut(s)	22, 52, 81, 111
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
Bse3DI	GCAATG	1 cut(s)	57
BseGI	GGATG	1 cut(s)	172
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseMI	GCAATG	1 cut(s)	57
BseMII	CTCAG	1 cut(s)	139
BshFI	GGCC	1 cut(s)	158
BsiSI	CCGG	1 cut(s)	87
BslI	CCNNNNNNNGG	1 cut(s)	17
BsmAI	GTCTC	1 cut(s)	48
BsmBI	CGTCTC	1 cut(s)	48
BsnI	GGCC	1 cut(s)	158
Bsp143I	GATC	1 cut(s)	121
BspANI	GGCC	1 cut(s)	158
BspCNI	CTCAG	1 cut(s)	138
BspLI	GGNNCC	1 cut(s)	91
BsrDI	GCAATG	1 cut(s)	57
BssMI	GATC	1 cut(s)	121
Bst4CI	ACNGT	2 cut(s)	12, 138
BstDEI	CTNAG	1 cut(s)	125
BstF5I	GGATG	1 cut(s)	172
BstKTI	GATC	1 cut(s)	124
BstMAI	GTCTC	1 cut(s)	48
BstMBI	GATC	1 cut(s)	121
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuRI	GGCC	1 cut(s)	158
BtsCI	GGATG	1 cut(s)	172
CviJI	RGCY	2 cut(s)	92, 158
CviKI_1	RGCY	2 cut(s)	92, 158
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
EaeI	YGGCCR	1 cut(s)	156
Esp3I	CGTCTC	1 cut(s)	48
FaiI	YATR	1 cut(s)	15
FokI	GGATG	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	158
HapII	CCGG	1 cut(s)	87
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HinfI	GANTC	1 cut(s)	170
HpaII	CCGG	1 cut(s)	87
Hpy166II	GTNNAC	4 cut(s)	57, 103, 131, 178
Hpy8I	GTNNAC	4 cut(s)	57, 103, 131, 178
Hpy99I	CGWCG	3 cut(s)	34, 68, 71
HpyAV	CCTTC	2 cut(s)	89, 157
HpyCH4III	ACNGT	2 cut(s)	12, 138
HpyF3I	CTNAG	1 cut(s)	125
Kzo9I	GATC	1 cut(s)	121
LmnI	GCTCC	1 cut(s)	89
LpnPI	CCDG	3 cut(s)	32, 100, 132
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	1 cut(s)	16
MflI	RGATCY	1 cut(s)	121
MlsI	TGGCCA	1 cut(s)	158
MluNI	TGGCCA	1 cut(s)	158
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	1 cut(s)	103
Mox20I	TGGCCA	1 cut(s)	158
MscI	TGGCCA	1 cut(s)	158
Msp20I	TGGCCA	1 cut(s)	158
MspI	CCGG	1 cut(s)	87
NdeII	GATC	1 cut(s)	121
NlaIV	GGNNCC	1 cut(s)	91
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PfeI	GAWTC	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	91
PsuI	RGATCY	1 cut(s)	121
Sau3AI	GATC	1 cut(s)	121
SgeI	CNNG	7 cut(s)	45, 59, 74, 95, 99, 131, 172
TaaI	ACNGT	2 cut(s)	12, 138
TfiI	GAWTC	1 cut(s)	170
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	30, 85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.