RLG00000005709

Domain of unknown function (DUF4516)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0010944
Physical Location & Seq
Reverse (-)
1028807 .. 1029379
573 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005709

Sequence Viewer

Length: 360 bp
ATGGACCCGGATCCTCCATCGAAGCAAGGACCCTTACCATTCGACCCGGAACTGCTTAACCTAACGACGTCGTTCACGTCACCTTCCCCAATAACACTTCGTCTCACCAGAAACCAAAGAAAACAGTCCGACAAATCCAACTCTTTCCGGCGAAGCAAACTGTCTATTCAGACGCCGAAGTTCGGCGGAGGGAAGCTGCCGACCGGCACTCCATCGCTGGCTTGGTCCAGCGTCGTCGTCGTCGTCTCACTTCTCGCCGGAGCCGCGGTCGTCCACAATCTCTACAAGCCCGATCTTACATTGCCTCCTGTCGATGGTGTTAATGTGACCAAGGAGAAGGAATCGGAGAAGAAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4516

Protein Analysis

120

Amino Acids

12.91

Weight (kDa)

9.7

Isoelectric Point (pI)

54.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4516 PF14990 66 - 104 5.7e-16 Domain of unknown function (DUF4516)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 71
AccII CGCG 1 cut(s) 266
AciI CCGC 3 cut(s) 186, 264, 266
AclWI GGATC 2 cut(s) 5, 18
AcyI GRCGYC 2 cut(s) 68, 173
AfiI CCNNNNNNNGG 2 cut(s) 182, 314
AjiI CACGTC 1 cut(s) 78
AluBI AGCT 1 cut(s) 196
AluI AGCT 1 cut(s) 196
Alw26I GTCTC 2 cut(s) 107, 250
AlwI GGATC 2 cut(s) 5, 18
ApeKI GCWGC 1 cut(s) 196
AspS9I GGNCC 3 cut(s) 4, 29, 225
AsuC2I CCSGG 2 cut(s) 8, 47
AsuHPI GGTGA 2 cut(s) 72, 97
AvaII GGWCC 3 cut(s) 4, 29, 225
BamHI GGATCC 1 cut(s) 10
BbvI GCAGC 1 cut(s) 183
BccI CCATC 3 cut(s) 25, 220, 308
BcnI CCSGG 2 cut(s) 8, 47
BcoDI GTCTC 2 cut(s) 107, 250
BisI GCNGC 2 cut(s) 197, 264
BlsI GCNGC 2 cut(s) 198, 265
Bme1390I CCNGG 2 cut(s) 8, 47
Bme18I GGWCC 3 cut(s) 4, 29, 225
BmgBI CACGTC 1 cut(s) 78
BmgT120I GGNCC 3 cut(s) 4, 29, 225
BmiI GGNNCC 4 cut(s) 6, 12, 31, 262
BmrFI CCNGG 2 cut(s) 8, 47
BpuMI CCSGG 2 cut(s) 8, 47
BsaHI GRCGYC 2 cut(s) 68, 173
BsaJI CCNNGG 2 cut(s) 264, 330
BsaXI ACNNNNNCTCC 6 cut(s) 193, 223, 252, 282, 289, 319
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 314
Bse118I RCCGGY 1 cut(s) 203
Bse3DI GCAATG 1 cut(s) 299
BseDI CCNNGG 2 cut(s) 264, 330
BseLI CCNNNNNNNGG 2 cut(s) 182, 314
BseMI GCAATG 1 cut(s) 299
BseXI GCAGC 1 cut(s) 183
Bsh1236I CGCG 1 cut(s) 266
Bsh1285I CGRYCG 2 cut(s) 204, 270
BsiEI CGRYCG 2 cut(s) 204, 270
BsiSI CCGG 5 cut(s) 8, 47, 148, 204, 258
BslI CCNNNNNNNGG 2 cut(s) 182, 314
BsmAI GTCTC 2 cut(s) 107, 250
BsmBI CGTCTC 2 cut(s) 107, 250
Bsp143I GATC 2 cut(s) 10, 292
BspACI CCGC 3 cut(s) 186, 264, 266
BspFNI CGCG 1 cut(s) 266
BspLI GGNNCC 4 cut(s) 6, 12, 31, 262
BspPI GGATC 2 cut(s) 5, 18
BsrDI GCAATG 1 cut(s) 299
BsrFI RCCGGY 1 cut(s) 203
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 2 cut(s) 264, 330
BssMI GATC 2 cut(s) 10, 292
BssNI GRCGYC 2 cut(s) 68, 173
BssT1I CCWWGG 1 cut(s) 330
Bst4CI ACNGT 2 cut(s) 126, 162
BstACI GRCGYC 2 cut(s) 68, 173
BstC8I GCNNGC 1 cut(s) 219
BstDSI CCRYGG 1 cut(s) 264
BstFNI CGCG 1 cut(s) 266
BstKTI GATC 2 cut(s) 13, 295
BstMAI GTCTC 2 cut(s) 107, 250
BstMBI GATC 2 cut(s) 10, 292
BstMCI CGRYCG 2 cut(s) 204, 270
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstSCI CCNGG 2 cut(s) 6, 45
BstUI CGCG 1 cut(s) 266
BstV1I GCAGC 1 cut(s) 183
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
BtgI CCRYGG 1 cut(s) 264
BtgZI GCGATG 1 cut(s) 198
BtrI CACGTC 1 cut(s) 78
Cac8I GCNNGC 1 cut(s) 219
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 3 cut(s) 4, 29, 225
Cfr42I CCGCGG 1 cut(s) 267
CseI GACGC 2 cut(s) 181, 220
CviJI RGCY 4 cut(s) 196, 221, 263, 289
CviKI_1 RGCY 4 cut(s) 196, 221, 263, 289
DpnI GATC 2 cut(s) 12, 294
DpnII GATC 2 cut(s) 10, 292
EciI GGCGGA 1 cut(s) 201
Eco130I CCWWGG 1 cut(s) 330
Eco47I GGWCC 3 cut(s) 4, 29, 225
EcoO109I RGGNCCY 1 cut(s) 29
EcoT14I CCWWGG 1 cut(s) 330
ErhI CCWWGG 1 cut(s) 330
Esp3I CGTCTC 2 cut(s) 107, 250
Fnu4HI GCNGC 2 cut(s) 197, 264
Fsp4HI GCNGC 2 cut(s) 197, 264
GluI GCNGC 2 cut(s) 197, 264
HapII CCGG 5 cut(s) 8, 47, 148, 204, 258
HgaI GACGC 2 cut(s) 181, 220
Hin1I GRCGYC 2 cut(s) 68, 173
HinfI GANTC 1 cut(s) 341
HpaII CCGG 5 cut(s) 8, 47, 148, 204, 258
HphI GGTGA 2 cut(s) 72, 97
Hpy166II GTNNAC 2 cut(s) 75, 274
Hpy188I TCNGA 3 cut(s) 130, 171, 346
Hpy8I GTNNAC 2 cut(s) 75, 274
Hpy99I CGWCG 6 cut(s) 70, 73, 236, 239, 242, 245
HpyAV CCTTC 2 cut(s) 93, 331
HpyCH4III ACNGT 2 cut(s) 126, 162
HpyCH4IV ACGT 2 cut(s) 68, 77
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpySE526I ACGT 2 cut(s) 68, 77
Hsp92I GRCGYC 2 cut(s) 68, 173
KspI CCGCGG 1 cut(s) 267
Kzo9I GATC 2 cut(s) 10, 292
LmnI GCTCC 1 cut(s) 260
LpnPI CCDG 9 cut(s) 21, 60, 121, 161, 203, 217, 241, 271, 321
Lsp1109I GCAGC 1 cut(s) 183
MaeII ACGT 2 cut(s) 68, 77
MaeIII GTNAC 2 cut(s) 78, 325
MalI GATC 2 cut(s) 12, 294
MboI GATC 2 cut(s) 10, 292
MflI RGATCY 1 cut(s) 10
MmeI TCCRAC 2 cut(s) 153, 162
MnlI CCTC 3 cut(s) 24, 182, 315
MseI TTAA 2 cut(s) 57, 321
MspA1I CMGCKG 1 cut(s) 266
MspI CCGG 5 cut(s) 8, 47, 148, 204, 258
MspR9I CCNGG 2 cut(s) 8, 47
MvnI CGCG 1 cut(s) 266
MwoI GCNNNNNNNGC 1 cut(s) 263
NciI CCSGG 2 cut(s) 8, 47
NdeII GATC 2 cut(s) 10, 292
NlaIV GGNNCC 4 cut(s) 6, 12, 31, 262
NmuCI GTSAC 2 cut(s) 78, 325
PcsI WCGNNNNNNNCGW 2 cut(s) 74, 240
PfeI GAWTC 1 cut(s) 341
PkrI GCNGC 2 cut(s) 198, 265
PpuMI RGGWCCY 1 cut(s) 29
Psp5II RGGWCCY 1 cut(s) 29
PspN4I GGNNCC 4 cut(s) 6, 12, 31, 262
PspPI GGNCC 3 cut(s) 4, 29, 225
PspPPI RGGWCCY 1 cut(s) 29
PsuI RGATCY 1 cut(s) 10
SacII CCGCGG 1 cut(s) 267
SaqAI TTAA 2 cut(s) 57, 321
SatI GCNGC 2 cut(s) 197, 264
Sau3AI GATC 2 cut(s) 10, 292
Sau96I GGNCC 3 cut(s) 4, 29, 225
ScrFI CCNGG 2 cut(s) 8, 47
SetI ASST 5 cut(s) 63, 71, 80, 85, 198
Sfr303I CCGCGG 1 cut(s) 267
SgrBI CCGCGG 1 cut(s) 267
SinI GGWCC 3 cut(s) 4, 29, 225
SsiI CCGC 3 cut(s) 186, 264, 266
StyD4I CCNGG 2 cut(s) 6, 45
StyI CCWWGG 1 cut(s) 330
TaaI ACNGT 2 cut(s) 126, 162
TaiI ACGT 2 cut(s) 71, 80
TaqI TCGA 3 cut(s) 20, 42, 312
TauI GCSGC 1 cut(s) 266
TfiI GAWTC 1 cut(s) 341
Tru1I TTAA 2 cut(s) 57, 321
Tru9I TTAA 2 cut(s) 57, 321
TseFI GTSAC 2 cut(s) 78, 325
TseI GCWGC 1 cut(s) 196
Tsp45I GTSAC 2 cut(s) 78, 325
VpaK11BI GGWCC 3 cut(s) 4, 29, 225
XcmI CCANNNNNNNNNTGG 1 cut(s) 219
ZraI GACGTC 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.