Rh4AG427500

Domain of unknown function (DUF4516)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0010944
Physical Location & Seq
Forward (+)
72364772 .. 72370127
5356 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG427500.1

Sequence Viewer

Length: 258 bp
ATGAATCAGAAGTCGAGCGGAAGGAAGCTGCCGACTGGCACTCTCTCCCTGGCTTGGTCCGGAGTTGTGGTCGTCTCGCTTCTCGCCGGAGCCTTCGTCGTCCACAGTGTCTACAAGCTCGATCTTACATATCTCCCGAAAACTGATTCAACCCAAACAATCCAGGCGTGCACAATTCTAGCTAGTCTTGAGGCCCGTGGTTGTCAGGCCCATCGTTTGGACGTTTTACCATTTAATTCTTTGCAATTAAGAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4516

Protein Analysis

85

Amino Acids

9.19

Weight (kDa)

9.51

Isoelectric Point (pI)

30.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4516 PF14990 10 - 44 1.8e-07 Domain of unknown function (DUF4516)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 217
AccBSI CCGCTC 1 cut(s) 18
AccI GTMKAC 1 cut(s) 111
AccIII TCCGGA 1 cut(s) 59
AciI CCGC 1 cut(s) 18
AfiI CCNNNNNNNGG 2 cut(s) 54, 217
AgsI TTSAA 1 cut(s) 150
AjnI CCWGG 2 cut(s) 48, 162
AluBI AGCT 3 cut(s) 28, 118, 182
AluI AGCT 3 cut(s) 28, 118, 182
Alw21I GWGCWC 1 cut(s) 173
Alw26I GTCTC 1 cut(s) 79
Alw44I GTGCAC 1 cut(s) 169
Aor13HI TCCGGA 1 cut(s) 59
AoxI GGCC 2 cut(s) 192, 207
ApaLI GTGCAC 1 cut(s) 169
ApeKI GCWGC 1 cut(s) 28
AspS9I GGNCC 3 cut(s) 57, 193, 208
AvaII GGWCC 1 cut(s) 57
BaeGI GKGCMC 1 cut(s) 173
Bbv12I GWGCWC 1 cut(s) 173
BbvI GCAGC 1 cut(s) 15
BccI CCATC 1 cut(s) 219
BciT130I CCWGG 2 cut(s) 50, 164
BcoDI GTCTC 1 cut(s) 79
BfaI CTAG 2 cut(s) 179, 183
BisI GCNGC 1 cut(s) 29
BlsI GCNGC 1 cut(s) 30
Bme1390I CCNGG 2 cut(s) 50, 164
Bme18I GGWCC 1 cut(s) 57
BmgT120I GGNCC 3 cut(s) 57, 193, 208
BmiI GGNNCC 1 cut(s) 91
BmrFI CCNGG 2 cut(s) 50, 164
BpuEI CTTGAG 1 cut(s) 209
BsaJI CCNNGG 2 cut(s) 48, 196
BsaWI WCCGGW 1 cut(s) 59
BsaXI ACNNNNNCTCC 4 cut(s) 54, 81, 84, 111
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 217
Bse1I ACTGG 1 cut(s) 40
BseAI TCCGGA 1 cut(s) 59
BseBI CCWGG 2 cut(s) 50, 164
BseDI CCNNGG 2 cut(s) 48, 196
BseLI CCNNNNNNNGG 2 cut(s) 54, 217
BseNI ACTGG 1 cut(s) 40
BseSI GKGCMC 1 cut(s) 173
BseXI GCAGC 1 cut(s) 15
BshFI GGCC 2 cut(s) 194, 209
BsiHKAI GWGCWC 1 cut(s) 173
BsiSI CCGG 2 cut(s) 60, 87
BslI CCNNNNNNNGG 2 cut(s) 54, 217
BsmAI GTCTC 1 cut(s) 79
BsmBI CGTCTC 1 cut(s) 79
BsnI GGCC 2 cut(s) 194, 209
Bsp1286I GDGCHC 1 cut(s) 173
Bsp13I TCCGGA 1 cut(s) 59
Bsp143I GATC 1 cut(s) 121
BspACI CCGC 1 cut(s) 18
BspANI GGCC 2 cut(s) 194, 209
BspEI TCCGGA 1 cut(s) 59
BspLI GGNNCC 1 cut(s) 91
BsrBI CCGCTC 1 cut(s) 18
BsrI ACTGG 1 cut(s) 40
BssECI CCNNGG 2 cut(s) 48, 196
BssMI GATC 1 cut(s) 121
Bst2UI CCWGG 2 cut(s) 50, 164
Bst4CI ACNGT 1 cut(s) 107
BstC8I GCNNGC 1 cut(s) 169
BstDSI CCRYGG 1 cut(s) 196
BstKTI GATC 1 cut(s) 124
BstMAI GTCTC 1 cut(s) 79
BstMBI GATC 1 cut(s) 121
BstNI CCWGG 2 cut(s) 50, 164
BstSCI CCNGG 2 cut(s) 48, 162
BstSLI GKGCMC 1 cut(s) 173
BstV1I GCAGC 1 cut(s) 15
BsuRI GGCC 2 cut(s) 194, 209
BtgI CCRYGG 1 cut(s) 196
BtsIMutI CAGTG 1 cut(s) 112
Cac8I GCNNGC 1 cut(s) 169
Cfr13I GGNCC 3 cut(s) 57, 193, 208
CviJI RGCY 7 cut(s) 28, 53, 92, 118, 182, 194, 209
CviKI_1 RGCY 7 cut(s) 28, 53, 92, 118, 182, 194, 209
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 57
EcoRII CCWGG 2 cut(s) 48, 162
Esp3I CGTCTC 1 cut(s) 79
FaiI YATR 1 cut(s) 130
FblI GTMKAC 1 cut(s) 111
Fnu4HI GCNGC 1 cut(s) 29
Fsp4HI GCNGC 1 cut(s) 29
FspBI CTAG 2 cut(s) 179, 183
GluI GCNGC 1 cut(s) 29
HaeIII GGCC 2 cut(s) 194, 209
HapII CCGG 2 cut(s) 60, 87
HinfI GANTC 2 cut(s) 4, 146
HpaII CCGG 2 cut(s) 60, 87
Hpy166II GTNNAC 3 cut(s) 103, 112, 171
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 3 cut(s) 60, 136, 188
Hpy8I GTNNAC 3 cut(s) 103, 112, 171
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 2 cut(s) 15, 103
HpyCH4III ACNGT 1 cut(s) 107
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 2 cut(s) 171, 244
HpySE526I ACGT 1 cut(s) 222
Kpn2I TCCGGA 1 cut(s) 59
Kzo9I GATC 1 cut(s) 121
LmnI GCTCC 1 cut(s) 89
LpnPI CCDG 8 cut(s) 21, 35, 62, 73, 100, 149, 176, 191
Lsp1109I GCAGC 1 cut(s) 15
MaeI CTAG 2 cut(s) 179, 183
MaeII ACGT 1 cut(s) 222
MalI GATC 1 cut(s) 123
MbiI CCGCTC 1 cut(s) 18
MboI GATC 1 cut(s) 121
MhlI GDGCHC 1 cut(s) 173
MluCI AATT 3 cut(s) 174, 235, 245
MnlI CCTC 1 cut(s) 184
MroI TCCGGA 1 cut(s) 59
MseI TTAA 3 cut(s) 234, 248, 256
MspI CCGG 2 cut(s) 60, 87
MspR9I CCNGG 2 cut(s) 50, 164
MvaI CCWGG 2 cut(s) 50, 164
NdeII GATC 1 cut(s) 121
NlaIV GGNNCC 1 cut(s) 91
PfeI GAWTC 2 cut(s) 4, 146
PflMI CCANNNNNTGG 1 cut(s) 217
PkrI GCNGC 1 cut(s) 30
Psp6I CCWGG 2 cut(s) 48, 162
PspGI CCWGG 2 cut(s) 48, 162
PspN4I GGNNCC 1 cut(s) 91
PspPI GGNCC 3 cut(s) 57, 193, 208
SaqAI TTAA 3 cut(s) 234, 248, 256
SatI GCNGC 1 cut(s) 29
Sau3AI GATC 1 cut(s) 121
Sau96I GGNCC 3 cut(s) 57, 193, 208
ScrFI CCNGG 2 cut(s) 50, 164
SduI GDGCHC 1 cut(s) 173
SetI ASST 4 cut(s) 30, 120, 184, 225
SinI GGWCC 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 3 cut(s) 174, 235, 245
SsiI CCGC 1 cut(s) 18
SspMI CTAG 2 cut(s) 179, 183
StyD4I CCNGG 2 cut(s) 48, 162
TaaI ACNGT 1 cut(s) 107
TaiI ACGT 1 cut(s) 225
TaqI TCGA 2 cut(s) 14, 120
TasI AATT 3 cut(s) 174, 235, 245
TfiI GAWTC 2 cut(s) 4, 146
Tru1I TTAA 3 cut(s) 234, 248, 256
Tru9I TTAA 3 cut(s) 234, 248, 256
TscAI CASTG 1 cut(s) 112
TseI GCWGC 1 cut(s) 28
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 112
Van91I CCANNNNNTGG 1 cut(s) 217
VneI GTGCAC 1 cut(s) 169
VpaK11BI GGWCC 1 cut(s) 57
XmiI GTMKAC 1 cut(s) 111
XspI CTAG 2 cut(s) 179, 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.