AT5G58040

atfip1 v

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009289
Physical Location & Seq
Forward (+)
23488745 .. 23494259
5515 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G58040.1

Sequence Viewer

Length: 3591 bp
ATGGAAGAGGACGATGAGTTCGGAGATCTATATTCCGACGTTCTCCAGCCGTTTCAACCTCCCGTTGTTCTCCCTCCTCCGCCTCCTCTTCCTCACCGTTCAATCGACCTCAACCTCCGATCCCAAGATCAAGATGTCTCAGAACCTAATTCAGCTCCAATCTCTAGGGTTTCGGACAACGATGCCGTAAAATTATCTACTCAGGACGCGACTCGTCAAGCAATTGTCGATGGTGGCGGCGACGATAAGGATATGAGCTTTGATATCGAAGAACCCGATGCCGATTCTACACCTACGATTCCTGGTCTTTTCGTTACTGGAGCGTTACCTGGTTTGGCTACAGATCGAGGCGTTTCGCAAGTTACGACAAGAATTGAGCAGCAGGTTGGTGGTGGTGGCGATGGAGGCTATGGAGGACAAGGAGAAGGAGATGATTGGGATAGCGACAGTGAAGATGATTTGCAGATAGTGTTGAATGATAGTAGCCGTAACGTCATGATCGGAGGAGCTGATAGAAGATCAAGGATGGGAGATAATGAAGATGACGATGATGAAGATGATGAAGACCCACTTGTTATAGTGGCCGACACGGATCCAAATCAACCTATGGAGGAGCAGATGTGGGGAGAAGATGGTCTTCAAGGGATTGAAGGAGATGGCAAAGACGGAGGAGAAGCTGGCAAGGGAAGTGGACCAGGAGGTGCTACTGGACCGCCCAAAGCAGGGTATAGCAGTCATGGGTATCATCCGTTTCATTCTCAGTTTAAGTATGTAAGACCGGGGGCAGCTCCCATTCCTGGAGGTGCTGCATCTGTTGGTGGACCCTCCTCAGGTCAAGTTCGTCCACCCGCCAACCTTGGTCCTATGGCTGGTCGTGGCAGAGGAGATTGGCGTCCACTGGGAATGAGGAATGCTTCTGCTGCACAGAAAGGGTTCCACCAGCCTTGGGGTAGTAATACAGCAGGGCGTGGACTGGACTTCACTCTTCCCTCTCACAAGACTATATTTGAGGTCGACATAGATAGTTTTGAAGAAAAGCCCTGGAGATATCCAGGAGTTGAGATGACAGACTACTTCAACTTTGGACTAAATGAGGAGAGCTGGAAAGACTATTGCAAACAGCTGGACCAACACCGTATACAGACTACGATGCAAAGCAGAATACGTGTTTATGAAAGCGGTAGAACGGATCAGGGTTATGATCCAGATCTACCCCCAGAGTTAGCTGCAGCAACAGGGGCACAGGGTGTTCCCGTTGATTCTTCAAATTTAGTGAAGCCAGACTCTGTTCAAGGTGATTCAGCGAAAGTGCCAGCCAATGTTAGACCGACACTACCCCCTGGAAGACCAATACCTGTGGAGACTGGTTCTGGTGAACGTCTTCCGTCCATTGATACACGTGCTCCTCGGATGCGTGATCTAGATGCTATCATTGAGATTGTATGTCAGGATTCACATGAGGATGAACCCTCGGGTGAAAATGGCACAGATCAAGCTGATAGTAGCCTTCCTGGAGAAAATGTACCAGTTGAGACTAGTTATGTTAACAACAAAAGACCTGACACGGAATCTGCTGAACATAGTCCTGCACAGGATGAGCCACATAAAAATCTTCTCAAAAAGCAAGACGATGAGATCTCTAGAAGCACAGATAGTGGCCAGAGTTTTCGTTCATCGTCTCCTGTTGGAGACAGAGGCACAAGGTCATCAAGTGTTGACCGCGAAGATGTGGGAGGTGAAGCTGGCAAAGATGCTGAGATGGGGGAGGAGCTTAAAATGAGTTTTACATCCCCTCAGTCAGCAGTGCAAGAAGATGATGGAGGGGAGTCAAAGACGGAGAGGAGTAGTGAAAGCAGCAAAGCAAGATCTGGAAGTCACAGAGATTTTCAGCAAGAAGAGGACGTTATTCAAGATAAGCATTCTTCTCGACCAGCTAACAATAGGAAACAGTACGATAACAATGCACCTCATCAGAGCAGAAAGAATCAGGACAGAGGGAAGGAAATGGAAAGAACACGAGCGGCGAGCAAAGGTGGTAGAGAGAACTCTAATCCACATATGGAGCTTGATTCTACTTATATCTACTCAATTGCAAGTCGCGAGGATTTTGATAAAAGAAAAGAGCGAGATGTTGATGGCGCAGTCTGGCGCAGGAAAGAAGATGACCCATACAGTAGAAGAGGTGGGGATGAAGGGTCTAGAAAAAGGGATCGTGAAGATGATCCAGGCTTTAGGCAGAGGGGTAAAATGCGCGAGAATGAAATACGCAGCAAAGATGATCAGGTTCCTTCCAGAAAACATATGGATGATGCTGGTATGAGAAATATTTATGAACCGGATGATCACATTAACAAGAGGAGGAAGGATGAAGAATACTTGAGAAGAAGCCGGCCTGAAAAAAATGAAATCTCATATGGTCAAAGGGAATCAATGAGCCGCGTGAAACGAGAACGTGATGATAGGTTGGAGCATCAAAAGAGAGATGTCCAACATAAGATCAGAGATGATTTTGACGACCACGGTTCTCTCAGGCAGAGAGATGATATCTATATGCAGAGGGATGGAAACGAGAGGTTGAGGGAGCGTGATGTTTTGGATAAATTGAAGCTGCCTCACGAGGATGGTATATCAGCACGAGGAAGAGAGAGGCAGGTGGCAGTAAGGGGCCACAGAGGTTCCGAAGATCGATCATCAAGGATGAAGGATGAGTATAAAGCTTCTGACAAAGAGCATGTCACGAAAGATACATTAAGGCATGCTAAACAGACAAAGAGAAGGGACTACCCTGGTGAAGAAAGTTCTTCCCATCATAGAGGACATGAAGACTTCTCTGCACGGACAGACAACATAGTTAACAATGAGAAAAAACCAAGGCAGGAGAGGACAGGTGCTAAAATTGATAAGTTTATTGATACTTTGGATGGCCAGCGATTGCAAGACAGAAAACATAAAGATTCTAGACGAAAGATTAAAGAACAGCGAGAGGGCACAGAATCACTTAGCAAGCAAGGGGAGCAAAATGGCAGTTCCGTAGTGACAGGATCAAAAGGAACCAACGACGCAAGGAATTGCAGGAGTGAGATCCCACATCAGCCTAACACCGCCAAAAGACACAAGGAAAATGCATCCTCTGGTGATGAGATACACGATTCAAAGAGAGGACGTACAAAACTGGAGCGTTGGGCAAGCCACAAAGAGAGAGAAGATGCTGTCTCTGCCAAGTCATCATCCATTTCCTCAAAACTAGAAGAAAAGGAAAACAACACTAATGGCCGTCTTAGTGAACCTGTTCATGGTTCTATTGGAAAGAGCCGGGATGTAACTGAAGAGAAAATTGGCCATGATCTTGCAGACACAAAAGATGGAAGCGAGAAGGGACCAGGAGACCGGCACTTGGATACGGTTGAGAAACTCAAGAAACGCAGTGAAAGGTTCAAGCTTCCAATGCCCACGGAGAAAGACACCACGGGAGTAAAGAAAATGGAGTCTGAGACACTGCCCTCCGCAAAAATTGAAGGCCCTGTGGATTCAGAGGGAGAGTATGTGTGGGATGAGCGAAGTTGTGTAAGAATAGGGAGGGAATACGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0042802 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fip1

Protein Analysis

1196

Amino Acids

133.44

Weight (kDa)

5.29

Isoelectric Point (pI)

57.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fip1 PF05182 337 - 379 2.8e-21 Fip1 motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2641
Acc36I ACCTGC 2 cut(s) 373, 2641
AccBSI CCGCTC 1 cut(s) 2021
AccI GTMKAC 2 cut(s) 1014, 1138
AccII CGCG 5 cut(s) 209, 1722, 2100, 2253, 2439
AclWI GGATC 9 cut(s) 114, 587, 600, 1196, 1197, 2216, 2217, 3049, 3076
AcoI YGGCCR 5 cut(s) 582, 1657, 2923, 3271, 3337
AcsI RAATTY 1 cut(s) 1267
AcuI CTGAAG 1 cut(s) 3345
AcvI CACGTG 1 cut(s) 1400
AcyI GRCGYC 1 cut(s) 892
AdeI CACNNNGTG 1 cut(s) 1247
AfaI GTAC 3 cut(s) 1524, 1952, 3166
AfiI CCNNNNNNNGG 8 cut(s) 722, 723, 797, 830, 869, 946, 3293, 3394
AflIII ACRYGT 2 cut(s) 1165, 1397
AhlI ACTAGT 1 cut(s) 1535
AjuI GAANNNNNNNTTGG 2 cut(s) 3318, 3350
AloI GAACNNNNNNTCC 1 cut(s) 34
Alw21I GWGCWC 1 cut(s) 1405
Alw26I GTCTC 8 cut(s) 142, 1355, 1526, 1683, 1683, 3217, 3378, 3485
AlwI GGATC 9 cut(s) 114, 587, 600, 1196, 1197, 2216, 2217, 3049, 3076
AlwNI CAGNNNCTG 1 cut(s) 1286
Ama87I CYCGRG 1 cut(s) 1471
AoxI GGCC 8 cut(s) 582, 1657, 2390, 2665, 2923, 3271, 3337, 3517
ApeKI GCWGC 9 cut(s) 379, 785, 806, 920, 1226, 1229, 1854, 2268, 2608
ApoI RAATTY 1 cut(s) 1267
ArsI GACNNNNNNTTYG 3 cut(s) 34, 2718, 2750
Asp700I GAANNNNTTC 3 cut(s) 932, 1380, 3288
AspLEI GCGC 3 cut(s) 2141, 2151, 2253
AspS9I GGNCC 8 cut(s) 692, 710, 821, 860, 1126, 2665, 3377, 3518
AsuC2I CCSGG 2 cut(s) 780, 3314
AsuHPI GGTGA 7 cut(s) 86, 1307, 1385, 1487, 1748, 2801, 3146
AvaI CYCGRG 1 cut(s) 1471
AvaII GGWCC 6 cut(s) 692, 710, 821, 860, 1126, 3377
AxyI CCTNAGG 1 cut(s) 829
BaeGI GKGCMC 2 cut(s) 1243, 2990
BalI TGGCCA 3 cut(s) 1659, 2925, 3339
BamHI GGATCC 1 cut(s) 592
BauI CACGAG 3 cut(s) 2016, 2615, 2634
BbrPI CACGTG 1 cut(s) 1400
BbsI GAAGAC 5 cut(s) 570, 629, 1351, 1373, 2829
Bbv12I GWGCWC 1 cut(s) 1405
BbvI GCAGC 9 cut(s) 391, 793, 797, 907, 1213, 1241, 1866, 2280, 2595
BceAI ACGGC 4 cut(s) 34, 170, 471, 3258
BcgI CGANNNNNNTGC 4 cut(s) 1907, 1941, 1943, 1977
BciVI GTATCC 1 cut(s) 3391
BclI TGATCA 2 cut(s) 2278, 2341
BcnI CCSGG 2 cut(s) 780, 3314
BcoDI GTCTC 8 cut(s) 142, 1355, 1526, 1683, 1683, 3217, 3378, 3485
BcuI ACTAGT 1 cut(s) 1535
BfaI CTAG 7 cut(s) 165, 1421, 1536, 1641, 2199, 2958, 3245
BfmI CTRYAG 2 cut(s) 339, 1227
BfuAI ACCTGC 2 cut(s) 373, 2641
BfuI GTATCC 1 cut(s) 3391
BglII AGATCT 4 cut(s) 25, 1207, 1635, 1865
Bme18I GGWCC 6 cut(s) 692, 710, 821, 860, 1126, 3377
BmeT110I CYCGRG 1 cut(s) 1471
BmgT120I GGNCC 8 cut(s) 692, 710, 821, 860, 1126, 2665, 3377, 3518
BmiI GGNNCC 8 cut(s) 594, 823, 935, 2286, 2666, 2677, 3052, 3378
BmrI ACTGGG 1 cut(s) 908
BmuI ACTGGG 1 cut(s) 908
BpiI GAAGAC 5 cut(s) 570, 629, 1351, 1373, 2829
BpmI CTGGAG 6 cut(s) 29, 339, 819, 1063, 1533, 3194
BpuEI CTTGAG 2 cut(s) 2398, 3398
BpuMI CCSGG 2 cut(s) 780, 3314
Bsa29I ATCGAT 1 cut(s) 2686
BsaAI YACGTR 2 cut(s) 1166, 1400
BsaBI GATNNNNATC 2 cut(s) 597, 1206
BsaHI GRCGYC 1 cut(s) 892
BsaI GGTCTC 1 cut(s) 3378
BsaWI WCCGGW 1 cut(s) 2335
BsaXI ACNNNNNCTCC 8 cut(s) 605, 635, 1387, 1417, 1506, 1536, 3528, 3558
Bsc4I CCNNNNNNNGG 8 cut(s) 722, 723, 797, 830, 869, 946, 3293, 3394
Bse118I RCCGGY 2 cut(s) 2388, 3387
Bse1I ACTGG 7 cut(s) 322, 712, 903, 978, 1369, 1526, 3177
Bse21I CCTNAGG 1 cut(s) 829
Bse8I GATNNNNATC 2 cut(s) 597, 1206
BseCI ATCGAT 1 cut(s) 2686
BseJI GATNNNNATC 2 cut(s) 597, 1206
BseLI CCNNNNNNNGG 8 cut(s) 722, 723, 797, 830, 869, 946, 3293, 3394
BseMII CTCAG 8 cut(s) 153, 215, 773, 843, 1746, 1808, 2542, 3480
BseNI ACTGG 7 cut(s) 322, 712, 903, 978, 1369, 1526, 3177
BseSI GKGCMC 2 cut(s) 1243, 2990
BseXI GCAGC 9 cut(s) 391, 793, 797, 907, 1213, 1241, 1866, 2280, 2595
BsgI GTGCAG 3 cut(s) 906, 1572, 2817
Bsh1236I CGCG 5 cut(s) 209, 1722, 2100, 2253, 2439
BshFI GGCC 8 cut(s) 584, 1659, 2392, 2667, 2925, 3273, 3339, 3519
BshVI ATCGAT 1 cut(s) 2686
BsiHKAI GWGCWC 1 cut(s) 1405
BsiHKCI CYCGRG 1 cut(s) 1471
BsiSI CCGG 5 cut(s) 779, 2336, 2389, 3313, 3388
BslFI GGGAC 2 cut(s) 2792, 3390
BslI CCNNNNNNNGG 8 cut(s) 722, 723, 797, 830, 869, 946, 3293, 3394
BsmAI GTCTC 8 cut(s) 142, 1355, 1526, 1683, 1683, 3217, 3378, 3485
BsmBI CGTCTC 1 cut(s) 1683
BsmFI GGGAC 2 cut(s) 2792, 3390
BsmI GAATGC 2 cut(s) 916, 1918
BsnI GGCC 8 cut(s) 584, 1659, 2392, 2667, 2925, 3273, 3339, 3519
Bso31I GGTCTC 1 cut(s) 3378
BsoBI CYCGRG 1 cut(s) 1471
Bsp1286I GDGCHC 3 cut(s) 1243, 1405, 2990
Bsp68I TCGCGA 1 cut(s) 2100
BspANI GGCC 8 cut(s) 584, 1659, 2392, 2667, 2925, 3273, 3339, 3519
BspCNI CTCAG 8 cut(s) 152, 214, 772, 842, 1747, 1807, 2541, 3481
BspDI ATCGAT 1 cut(s) 2686
BspFNI CGCG 5 cut(s) 209, 1722, 2100, 2253, 2439
BspHI TCATGA 1 cut(s) 495
BspLI GGNNCC 8 cut(s) 594, 823, 935, 2286, 2666, 2677, 3052, 3378
BspMAI CTGCAG 1 cut(s) 1231
BspMI ACCTGC 2 cut(s) 373, 2641
BspPI GGATC 9 cut(s) 114, 587, 600, 1196, 1197, 2216, 2217, 3049, 3076
BspTNI GGTCTC 1 cut(s) 3378
BsrBI CCGCTC 1 cut(s) 2021
BsrFI RCCGGY 2 cut(s) 2388, 3387
BsrI ACTGG 7 cut(s) 322, 712, 903, 978, 1369, 1526, 3177
BssAI RCCGGY 2 cut(s) 2388, 3387
BssNAI GTATAC 1 cut(s) 1139
BssNI GRCGYC 1 cut(s) 892
BssSI CACGAG 3 cut(s) 2016, 2615, 2634
BssT1I CCWWGG 3 cut(s) 856, 944, 2870
Bst1107I GTATAC 1 cut(s) 1139
Bst2BI CACGAG 3 cut(s) 2016, 2615, 2634
Bst4CI ACNGT 7 cut(s) 98, 449, 1136, 1950, 2174, 2522, 3403
Bst6I CTCTTC 6 cut(s) 93, 990, 1890, 2173, 2635, 3321
BstACI GRCGYC 1 cut(s) 892
BstBAI YACGTR 2 cut(s) 1166, 1400
BstC8I GCNNGC 9 cut(s) 679, 1314, 1744, 2026, 2390, 2757, 2927, 3005, 3187
BstDSI CCRYGG 3 cut(s) 2518, 3450, 3465
BstFNI CGCG 5 cut(s) 209, 1722, 2100, 2253, 2439
BstHHI GCGC 3 cut(s) 2141, 2151, 2253
BstMAI GTCTC 8 cut(s) 142, 1355, 1526, 1683, 1683, 3217, 3378, 3485
BstMWI GCNNNNNNNGC 6 cut(s) 405, 920, 1238, 3013, 3215, 3445
BstNSI RCATGY 2 cut(s) 2735, 2759
BstSFI CTRYAG 2 cut(s) 339, 1227
BstSLI GKGCMC 2 cut(s) 1243, 2990
BstUI CGCG 5 cut(s) 209, 1722, 2100, 2253, 2439
BstV1I GCAGC 9 cut(s) 391, 793, 797, 907, 1213, 1241, 1866, 2280, 2595
BstV2I GAAGAC 5 cut(s) 570, 629, 1351, 1373, 2829
BstX2I RGATCY 6 cut(s) 25, 592, 1207, 1635, 1865, 3081
BstYI RGATCY 6 cut(s) 25, 592, 1207, 1635, 1865, 3081
BstZ17I GTATAC 1 cut(s) 1139
Bsu15I ATCGAT 1 cut(s) 2686
Bsu36I CCTNAGG 1 cut(s) 829
BsuI GTATCC 1 cut(s) 3391
BsuRI GGCC 8 cut(s) 584, 1659, 2392, 2667, 2925, 3273, 3339, 3519
BsuTUI ATCGAT 1 cut(s) 2686
BtgI CCRYGG 3 cut(s) 2518, 3450, 3465
BtgZI GCGATG 1 cut(s) 414
BtsI GCAGTG 3 cut(s) 1809, 3430, 3494
BtsIMutI CAGTG 5 cut(s) 454, 896, 1809, 3430, 3494
BtuMI TCGCGA 1 cut(s) 2100
BveI ACCTGC 2 cut(s) 373, 2641
Cac8I GCNNGC 9 cut(s) 679, 1314, 1744, 2026, 2390, 2757, 2927, 3005, 3187
CaiI CAGNNNCTG 1 cut(s) 1286
CciI TCATGA 1 cut(s) 495
CfoI GCGC 3 cut(s) 2141, 2151, 2253
Cfr10I RCCGGY 2 cut(s) 2388, 3387
Cfr13I GGNCC 8 cut(s) 692, 710, 821, 860, 1126, 2665, 3377, 3518
ClaI ATCGAT 1 cut(s) 2686
CseI GACGC 3 cut(s) 215, 881, 3068
CsiI ACCWGGT 1 cut(s) 328
Csp6I GTAC 3 cut(s) 1523, 1951, 3165
CspCI CAANNNNNGTGG 6 cut(s) 670, 705, 926, 961, 1338, 1373
CviAII CATG 8 cut(s) 496, 737, 1457, 2732, 2756, 2819, 3293, 3341
CviQI GTAC 3 cut(s) 1523, 1951, 3165
DraIII CACNNNGTG 1 cut(s) 1247
EaeI YGGCCR 5 cut(s) 582, 1657, 2923, 3271, 3337
Eam1104I CTCTTC 6 cut(s) 93, 990, 1890, 2173, 2635, 3321
EarI CTCTTC 6 cut(s) 93, 990, 1890, 2173, 2635, 3321
EciI GGCGGA 1 cut(s) 69
Eco130I CCWWGG 3 cut(s) 856, 944, 2870
Eco31I GGTCTC 1 cut(s) 3378
Eco32I GATATC 3 cut(s) 265, 1049, 2545
Eco47I GGWCC 6 cut(s) 692, 710, 821, 860, 1126, 3377
Eco57I CTGAAG 1 cut(s) 3345
Eco72I CACGTG 1 cut(s) 1400
Eco81I CCTNAGG 1 cut(s) 829
Eco88I CYCGRG 1 cut(s) 1471
EcoO109I RGGNCCY 1 cut(s) 3518
EcoRV GATATC 3 cut(s) 265, 1049, 2545
EcoT14I CCWWGG 3 cut(s) 856, 944, 2870
EcoT22I ATGCAT 1 cut(s) 3127
ErhI CCWWGG 3 cut(s) 856, 944, 2870
Esp3I CGTCTC 1 cut(s) 1683
FaeI CATG 8 cut(s) 499, 740, 1460, 2735, 2759, 2822, 3296, 3344
FalI AAGNNNNNCTT 4 cut(s) 555, 587, 621, 653
FaqI GGGAC 2 cut(s) 2792, 3390
FatI CATG 8 cut(s) 495, 736, 1456, 2731, 2755, 2818, 3292, 3340
FauI CCCGC 1 cut(s) 856
FauNDI CATATG 3 cut(s) 2058, 2301, 2413
FbaI TGATCA 2 cut(s) 2278, 2341
FblI GTMKAC 2 cut(s) 1014, 1138
FspBI CTAG 7 cut(s) 165, 1421, 1536, 1641, 2199, 2958, 3245
GlaI GCGC 3 cut(s) 2140, 2150, 2252
GsuI CTGGAG 6 cut(s) 29, 339, 819, 1063, 1533, 3194
HaeIII GGCC 8 cut(s) 584, 1659, 2392, 2667, 2925, 3273, 3339, 3519
HapII CCGG 5 cut(s) 779, 2336, 2389, 3313, 3388
HgaI GACGC 3 cut(s) 215, 881, 3068
HhaI GCGC 3 cut(s) 2141, 2151, 2253
Hin1I GRCGYC 1 cut(s) 892
Hin1II CATG 8 cut(s) 499, 740, 1460, 2735, 2759, 2822, 3296, 3344
Hin6I GCGC 3 cut(s) 2139, 2149, 2251
HinP1I GCGC 3 cut(s) 2139, 2149, 2251
HincII GTYRAC 4 cut(s) 1015, 1546, 1717, 2854
HindII GTYRAC 4 cut(s) 1015, 1546, 1717, 2854
HindIII AAGCTT 2 cut(s) 2715, 3437
HpaI GTTAAC 2 cut(s) 1546, 2854
HpaII CCGG 5 cut(s) 779, 2336, 2389, 3313, 3388
HphI GGTGA 7 cut(s) 86, 1307, 1385, 1487, 1748, 2801, 3146
Hpy99I CGWCG 3 cut(s) 41, 245, 3062
HpyCH4III ACNGT 7 cut(s) 98, 449, 1136, 1950, 2174, 2522, 3403
HpyCH4IV ACGT 8 cut(s) 39, 492, 1165, 1378, 1399, 1902, 2452, 3163
HpyF10VI GCNNNNNNNGC 6 cut(s) 405, 920, 1238, 3013, 3215, 3445
HpySE526I ACGT 8 cut(s) 39, 492, 1165, 1378, 1399, 1902, 2452, 3163
Hsp92I GRCGYC 1 cut(s) 892
Hsp92II CATG 8 cut(s) 499, 740, 1460, 2735, 2759, 2822, 3296, 3344
HspAI GCGC 3 cut(s) 2139, 2149, 2251
KroI GCCGGC 1 cut(s) 2388
KroNI GCCGGC 1 cut(s) 2390
Ksp22I TGATCA 2 cut(s) 2278, 2341
KspAI GTTAAC 2 cut(s) 1546, 2854
Lsp1109I GCAGC 9 cut(s) 391, 793, 797, 907, 1213, 1241, 1866, 2280, 2595
MabI ACCWGGT 1 cut(s) 328
MaeI CTAG 7 cut(s) 165, 1421, 1536, 1641, 2199, 2958, 3245
MaeII ACGT 8 cut(s) 39, 492, 1165, 1378, 1399, 1902, 2452, 3163
MaeIII GTNAC 8 cut(s) 313, 324, 361, 488, 1874, 2734, 3034, 3319
MbiI CCGCTC 1 cut(s) 2021
MfeI CAATTG 2 cut(s) 222, 2088
MflI RGATCY 6 cut(s) 25, 592, 1207, 1635, 1865, 3081
MhlI GDGCHC 3 cut(s) 1243, 1405, 2990
MlsI TGGCCA 3 cut(s) 1659, 2925, 3339
MluNI TGGCCA 3 cut(s) 1659, 2925, 3339
MlyI GAGTC 4 cut(s) 205, 1277, 1835, 3494
MmeI TCCRAC 4 cut(s) 60, 1666, 2445, 2512
Mox20I TGGCCA 3 cut(s) 1659, 2925, 3339
Mph1103I ATGCAT 1 cut(s) 3127
MroNI GCCGGC 1 cut(s) 2388
MroXI GAANNNNTTC 3 cut(s) 932, 1380, 3288
MscI TGGCCA 3 cut(s) 1659, 2925, 3339
MseI TTAA 7 cut(s) 765, 1545, 1773, 2349, 2750, 2853, 2970
MslI CAYNNNNRTG 3 cut(s) 1461, 2304, 2619
Msp20I TGGCCA 3 cut(s) 1659, 2925, 3339
MspA1I CMGCKG 1 cut(s) 1123
MspI CCGG 5 cut(s) 779, 2336, 2389, 3313, 3388
MunI CAATTG 2 cut(s) 222, 2088
Mva1269I GAATGC 2 cut(s) 916, 1918
MvnI CGCG 5 cut(s) 209, 1722, 2100, 2253, 2439
MwoI GCNNNNNNNGC 6 cut(s) 405, 920, 1238, 3013, 3215, 3445
NaeI GCCGGC 1 cut(s) 2390
NciI CCSGG 2 cut(s) 780, 3314
NdeI CATATG 3 cut(s) 2058, 2301, 2413
NgoMIV GCCGGC 1 cut(s) 2388
NlaIII CATG 8 cut(s) 499, 740, 1460, 2735, 2759, 2822, 3296, 3344
NlaIV GGNNCC 8 cut(s) 594, 823, 935, 2286, 2666, 2677, 3052, 3378
NmuCI GTSAC 3 cut(s) 1874, 2734, 3034
NruI TCGCGA 1 cut(s) 2100
NsiI ATGCAT 1 cut(s) 3127
NspI RCATGY 2 cut(s) 2735, 2759
PaeI GCATGC 1 cut(s) 2759
PagI TCATGA 1 cut(s) 495
PaqCI CACCTGC 1 cut(s) 2641
PcsI WCGNNNNNNNCGW 2 cut(s) 273, 362
PctI GAATGC 2 cut(s) 916, 1918
PdiI GCCGGC 1 cut(s) 2390
PdmI GAANNNNTTC 3 cut(s) 932, 1380, 3288
PfoI TCCNGGA 3 cut(s) 796, 1051, 1510
PleI GAGTC 4 cut(s) 205, 1277, 1834, 3493
PmaCI CACGTG 1 cut(s) 1400
PmlI CACGTG 1 cut(s) 1400
PpsI GAGTC 4 cut(s) 205, 1277, 1834, 3493
Ppu21I YACGTR 2 cut(s) 1166, 1400
PspCI CACGTG 1 cut(s) 1400
PspN4I GGNNCC 8 cut(s) 594, 823, 935, 2286, 2666, 2677, 3052, 3378
PspPI GGNCC 8 cut(s) 692, 710, 821, 860, 1126, 2665, 3377, 3518
PstI CTGCAG 1 cut(s) 1231
PstNI CAGNNNCTG 1 cut(s) 1286
PsuI RGATCY 6 cut(s) 25, 592, 1207, 1635, 1865, 3081
PvuII CAGCTG 1 cut(s) 1123
RruI TCGCGA 1 cut(s) 2100
RsaI GTAC 3 cut(s) 1524, 1952, 3166
RsaNI GTAC 3 cut(s) 1523, 1951, 3165
RseI CAYNNNNRTG 3 cut(s) 1461, 2304, 2619
SalI GTCGAC 1 cut(s) 1013
SaqAI TTAA 7 cut(s) 765, 1545, 1773, 2349, 2750, 2853, 2970
Sau96I GGNCC 8 cut(s) 692, 710, 821, 860, 1126, 2665, 3377, 3518
SchI GAGTC 4 cut(s) 205, 1277, 1835, 3494
SduI GDGCHC 3 cut(s) 1243, 1405, 2990
SexAI ACCWGGT 1 cut(s) 328
SfcI CTRYAG 2 cut(s) 339, 1227
SinI GGWCC 6 cut(s) 692, 710, 821, 860, 1126, 3377
SmiMI CAYNNNNRTG 3 cut(s) 1461, 2304, 2619
SmlI CTYRAG 2 cut(s) 2377, 3413
SmoI CTYRAG 2 cut(s) 2377, 3413
SpeI ACTAGT 1 cut(s) 1535
SphI GCATGC 1 cut(s) 2759
SspI AATATT 1 cut(s) 2326
SspMI CTAG 7 cut(s) 165, 1421, 1536, 1641, 2199, 2958, 3245
StyI CCWWGG 3 cut(s) 856, 944, 2870
TaaI ACNGT 7 cut(s) 98, 449, 1136, 1950, 2174, 2522, 3403
TaiI ACGT 8 cut(s) 42, 495, 1168, 1381, 1402, 1905, 2455, 3166
TaqI TCGA 7 cut(s) 105, 228, 267, 346, 1014, 1927, 2686
TaqII GACCGA 1 cut(s) 1342
TauI GCSGC 3 cut(s) 240, 2024, 2439
Tru1I TTAA 7 cut(s) 765, 1545, 1773, 2349, 2750, 2853, 2970
Tru9I TTAA 7 cut(s) 765, 1545, 1773, 2349, 2750, 2853, 2970
TscAI CASTG 5 cut(s) 454, 903, 1809, 3430, 3501
TseFI GTSAC 3 cut(s) 1874, 2734, 3034
TseI GCWGC 9 cut(s) 379, 785, 806, 920, 1226, 1229, 1854, 2268, 2608
Tsp45I GTSAC 3 cut(s) 1874, 2734, 3034
TspRI CASTG 5 cut(s) 454, 903, 1809, 3430, 3501
VpaK11BI GGWCC 6 cut(s) 692, 710, 821, 860, 1126, 3377
XapI RAATTY 1 cut(s) 1267
XbaI TCTAGA 4 cut(s) 1420, 1640, 2198, 2957
XceI RCATGY 2 cut(s) 2735, 2759
XcmI CCANNNNNNNNNTGG 1 cut(s) 2299
XmiI GTMKAC 2 cut(s) 1014, 1138
XmnI GAANNNNTTC 3 cut(s) 932, 1380, 3288
XspI CTAG 7 cut(s) 165, 1421, 1536, 1641, 2199, 2958, 3245
Zsp2I ATGCAT 1 cut(s) 3127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.