Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0009289

Physical Location & Seq

Genomic Coordinates Forward (+)

524078 .. 526059

Gene Structure 1982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g00870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGCCACAGAGACAATAGCACTCGCCGAAAGCGTGAAAGGGATGAAATTCTGGATCAGCGTAAGAGAGATGAGCAACAAAGAGTTAGAGAAAATCTTGATCGATCTGCACCCTGTTAGGCACAAAGATGATGGCTGGTCGCAGAGGGAGAGAGGTGACAGGCAAAGAGAGAAGGAGGAGTGGCATAGGGTCAAACAATCCCATGAGGAAAATATACCCAAGCGTGAACGAGATGAAGGACGAGTTGCTATAAGGGGTGGGCGTGGTGCAGAAGACAAAGCATGGGTAGGCCATACTAGGGCAAAGGATGAGAACAAAGGCTCTGATAAGGAGCACCAATATAAAGAGACTGCACGGCATAGCGAACCATCTAAAAGGAGAGATAGGGTTGAGGAAGAAAGCTCACATCGTAGGGGACGTGAAGATGTTCATGGACGTGGAAATCAAATAAATAATGATGAGAAAAGATCTGGAAAGGAGAGATCAAGTACTCATAATGAGCGTGCTGACAACCAAAAGATCCATGACAGAAAACATAAAGAAAATTCAAGGAAGACTAAAGAATCTGAGATTGCTAATAACAGCACCACTTCCAAGAGACATCAAGAAGATCAAAGTGGTTATAATAAGGAGATGGGCTTGAAAGGCACCCGTGTGCAAGGAACTGGTGAGGAAATCCCACCACAGCGTCACTCTTCCAAAAGGCATAAGGAAGATGTTTCCTCTGATGATGAACAAGAGGATTTGAAAAGGGGGCGCTCCAAATTGGAGCGCTGGACAAGCCATAAGGAGAGGGATTTCAGTATCAACAGTAAATCATCTTTGAAGCTCAAAGAGCTTGATAGGATCAACAACCGAGGATCCTCAGATGCCAATAAAGTTCCAGAGGAATCTTCCAAGCCAGTTGAGGCTGTTGATAATCAACATTCAATGGCTGAGGAGAAAGATGCCGGTGATCAGGATATCAAGGATGCCGACACAAAACCATTGGAGGAGCGACACCTGGACACAGTCGAGAAGTTAAAGAAAAGAAGTGAGCGTTTCAAGCGTCCGATGCCAAGTGAAAAAGAGCCAGTGGCAATCAAAAAGGTGGAGAGTGATGTGCCGCCTTCCACCAGTAGCGAAACTCAGACTCAGACTCAGACTCCTGTGGAATCGGAGATCAAACCAGAGCGGCCAGCTAGGAAAAGAAGGTGGATCAGCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0042802 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fip1

Protein Analysis

403

Amino Acids

46.76

Weight (kDa)

9.15

Isoelectric Point (pI)

63.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58040 AT5G58040
fragaria_vesca	FvH4_1g01180
malus_domestica	MD02G1009900.v1.1
prunus_persica	Prupe.7G260100_v2.0.a1 Prupe.7G260100_v2.0.a1 Prupe.7G260100_v2.0.a1
pyrus_communis	pycom02g00860 pycom02g00870 pycom11g19220 pycom15g13900
rosa_chinensis	RchiOBHm_Chr2g0085981
rosa_laevigata	RLG00000015731
rosa_multiflora	Rmu_ssc0000355.1_g000025
rosa_roxburghii	Rroxscaffold_2G00154880
rosa_rugosa	Rorug01G0464800 Rorug01G0464800
rosa_samantha	Rh2AG014000 Rh2BG014500 Rh2CG015000 Rh2DG016300
rosa_wichuraiana	Rw2G001240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	624
AccB1I	GGYRCC	1 cut(s)	647
AccBSI	CCGCTC	1 cut(s)	1174
AciI	CCGC	2 cut(s)	1106, 1174
AclWI	GGATC	6 cut(s)	62, 514, 854, 855, 868, 1205
AcoI	YGGCCR	2 cut(s)	3, 1175
AcsI	RAATTY	2 cut(s)	47, 544
AfaI	GTAC	1 cut(s)	490
AfeI	AGCGCT	1 cut(s)	773
AfiI	CCNNNNNNNGG	1 cut(s)	298
AgsI	TTSAA	6 cut(s)	549, 643, 748, 826, 930, 1045
AjiI	CACGTC	2 cut(s)	419, 437
AjnI	CCWGG	1 cut(s)	1002
AleI	CACNNNNGTG	1 cut(s)	653
AluBI	AGCT	4 cut(s)	402, 829, 838, 1181
AluI	AGCT	4 cut(s)	402, 829, 838, 1181
Alw21I	GWGCWC	1 cut(s)	336
Alw26I	GTCTC	3 cut(s)	5, 341, 592
AlwI	GGATC	6 cut(s)	62, 514, 854, 855, 868, 1205
AlwNI	CAGNNNCTG	1 cut(s)	1206
Aor51HI	AGCGCT	1 cut(s)	773
AoxI	GGCC	3 cut(s)	3, 289, 1175
ApoI	RAATTY	2 cut(s)	47, 544
Asp700I	GAANNNNTTC	1 cut(s)	426
AspLEI	GCGC	2 cut(s)	759, 774
AsuHPI	GGTGA	3 cut(s)	167, 680, 965
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	860
BanI	GGYRCC	1 cut(s)	647
BbsI	GAAGAC	2 cut(s)	279, 560
Bbv12I	GWGCWC	1 cut(s)	336
BbvCI	CCTCAGC	1 cut(s)	936
BccI	CCATC	3 cut(s)	125, 376, 628
BceAI	ACGGC	1 cut(s)	371
BciT130I	CCWGG	1 cut(s)	1004
BclI	TGATCA	1 cut(s)	955
BcoDI	GTCTC	3 cut(s)	5, 341, 592
BfaI	CTAG	2 cut(s)	297, 1182
BfoI	RGCGCY	2 cut(s)	760, 775
BglII	AGATCT	1 cut(s)	467
BisI	GCNGC	2 cut(s)	1106, 1175
BlsI	GCNGC	2 cut(s)	1107, 1176
BmcAI	AGTACT	1 cut(s)	490
Bme1390I	CCNGG	1 cut(s)	1004
BmgBI	CACGTC	2 cut(s)	419, 437
BmiI	GGNNCC	2 cut(s)	649, 862
BmrFI	CCNGG	1 cut(s)	1004
BmsI	GCATC	4 cut(s)	859, 937, 961, 1044
BpiI	GAAGAC	2 cut(s)	279, 560
Bpu10I	CCTNAGC	1 cut(s)	936
Bsa29I	ATCGAT	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	856
BsaXI	ACNNNNNCTCC	2 cut(s)	1129, 1159
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse118I	RCCGGY	1 cut(s)	950
Bse1I	ACTGG	4 cut(s)	670, 902, 1073, 1116
BseBI	CCWGG	1 cut(s)	1004
BseCI	ATCGAT	1 cut(s)	102
BseDI	CCNNGG	1 cut(s)	856
BseGI	GGATG	3 cut(s)	48, 313, 976
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseMII	CTCAG	6 cut(s)	558, 879, 927, 1142, 1148, 1154
BseNI	ACTGG	4 cut(s)	670, 902, 1073, 1116
BseRI	GAGGAG	3 cut(s)	191, 953, 1007
BsgI	GTGCAG	3 cut(s)	92, 288, 336
BshFI	GGCC	3 cut(s)	5, 291, 1177
BshNI	GGYRCC	1 cut(s)	647
BshVI	ATCGAT	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	336
BsiSI	CCGG	1 cut(s)	951
BslFI	GGGAC	1 cut(s)	429
BslI	CCNNNNNNNGG	1 cut(s)	298
BsmAI	GTCTC	3 cut(s)	5, 341, 592
BsmFI	GGGAC	1 cut(s)	429
BsnI	GGCC	3 cut(s)	5, 291, 1177
Bsp1286I	GDGCHC	1 cut(s)	336
BspACI	CCGC	2 cut(s)	1106, 1174
BspANI	GGCC	3 cut(s)	5, 291, 1177
BspCNI	CTCAG	6 cut(s)	559, 878, 928, 1141, 1147, 1153
BspDI	ATCGAT	1 cut(s)	102
BspLI	GGNNCC	2 cut(s)	649, 862
BspPI	GGATC	6 cut(s)	62, 514, 854, 855, 868, 1205
BspT107I	GGYRCC	1 cut(s)	647
BsrBI	CCGCTC	1 cut(s)	1174
BsrFI	RCCGGY	1 cut(s)	950
BsrI	ACTGG	4 cut(s)	670, 902, 1073, 1116
BssAI	RCCGGY	1 cut(s)	950
BssECI	CCNNGG	1 cut(s)	856
Bst2UI	CCWGG	1 cut(s)	1004
Bst4CI	ACNGT	2 cut(s)	812, 1012
Bst6I	CTCTTC	1 cut(s)	700
BstC8I	GCNNGC	2 cut(s)	504, 1179
BstDEI	CTNAG	6 cut(s)	567, 865, 936, 1128, 1134, 1140
BstF5I	GGATG	3 cut(s)	48, 313, 976
BstH2I	RGCGCY	2 cut(s)	760, 775
BstHHI	GCGC	2 cut(s)	759, 774
BstMAI	GTCTC	3 cut(s)	5, 341, 592
BstMWI	GCNNNNNNNGC	5 cut(s)	645, 780, 835, 1045, 1054
BstNI	CCWGG	1 cut(s)	1004
BstSCI	CCNGG	1 cut(s)	1002
BstV2I	GAAGAC	2 cut(s)	279, 560
BstX2I	RGATCY	3 cut(s)	467, 519, 860
BstYI	RGATCY	3 cut(s)	467, 519, 860
Bsu15I	ATCGAT	1 cut(s)	102
BsuRI	GGCC	3 cut(s)	5, 291, 1177
BsuTUI	ATCGAT	1 cut(s)	102
BtrI	CACGTC	2 cut(s)	419, 437
BtsCI	GGATG	3 cut(s)	48, 313, 976
BtsIMutI	CAGTG	1 cut(s)	1080
Cac8I	GCNNGC	2 cut(s)	504, 1179
CaiI	CAGNNNCTG	1 cut(s)	1206
CfoI	GCGC	2 cut(s)	759, 774
Cfr10I	RCCGGY	1 cut(s)	950
ClaI	ATCGAT	1 cut(s)	102
CseI	GACGC	2 cut(s)	677, 1037
Csp6I	GTAC	1 cut(s)	489
CviAII	CATG	4 cut(s)	203, 282, 431, 524
CviQI	GTAC	1 cut(s)	489
DdeI	CTNAG	6 cut(s)	567, 865, 936, 1128, 1134, 1140
EaeI	YGGCCR	2 cut(s)	3, 1175
Eam1104I	CTCTTC	1 cut(s)	700
EarI	CTCTTC	1 cut(s)	700
Eco32I	GATATC	1 cut(s)	964
Eco47III	AGCGCT	1 cut(s)	773
EcoRII	CCWGG	1 cut(s)	1002
EcoRV	GATATC	1 cut(s)	964
FaeI	CATG	4 cut(s)	206, 285, 434, 527
FaqI	GGGAC	1 cut(s)	429
FatI	CATG	4 cut(s)	202, 281, 430, 523
FbaI	TGATCA	1 cut(s)	955
Fnu4HI	GCNGC	2 cut(s)	1106, 1175
FokI	GGATG	3 cut(s)	55, 320, 983
Fsp4HI	GCNGC	2 cut(s)	1106, 1175
FspBI	CTAG	2 cut(s)	297, 1182
GlaI	GCGC	2 cut(s)	758, 773
GluI	GCNGC	2 cut(s)	1106, 1175
HaeII	RGCGCY	2 cut(s)	760, 775
HaeIII	GGCC	3 cut(s)	5, 291, 1177
HapII	CCGG	1 cut(s)	951
HgaI	GACGC	2 cut(s)	677, 1037
HhaI	GCGC	2 cut(s)	759, 774
Hin1II	CATG	4 cut(s)	206, 285, 434, 527
Hin6I	GCGC	2 cut(s)	757, 772
HinP1I	GCGC	2 cut(s)	757, 772
HinfI	GANTC	6 cut(s)	563, 890, 1132, 1138, 1144, 1154
HpaII	CCGG	1 cut(s)	951
HphI	GGTGA	3 cut(s)	167, 680, 965
Hpy166II	GTNNAC	1 cut(s)	227
Hpy188I	TCNGA	9 cut(s)	325, 568, 727, 868, 1053, 1131, 1137, 1143, 1159
Hpy188III	TCNNGA	7 cut(s)	52, 97, 471, 605, 884, 959, 1015
Hpy8I	GTNNAC	1 cut(s)	227
HpyAV	CCTTC	4 cut(s)	166, 230, 1119, 1185
HpyCH4III	ACNGT	2 cut(s)	812, 1012
HpyCH4IV	ACGT	2 cut(s)	418, 436
HpyCH4V	TGCA	4 cut(s)	109, 269, 353, 658
HpyF10VI	GCNNNNNNNGC	5 cut(s)	645, 780, 835, 1045, 1054
HpyF3I	CTNAG	6 cut(s)	567, 865, 936, 1128, 1134, 1140
HpySE526I	ACGT	2 cut(s)	418, 436
Hsp92II	CATG	4 cut(s)	206, 285, 434, 527
HspAI	GCGC	2 cut(s)	757, 772
Ksp22I	TGATCA	1 cut(s)	955
LmnI	GCTCC	4 cut(s)	331, 764, 769, 994
LweI	GCATC	4 cut(s)	859, 937, 961, 1044
MaeI	CTAG	2 cut(s)	297, 1182
MaeII	ACGT	2 cut(s)	418, 436
MaeIII	GTNAC	2 cut(s)	155, 689
MbiI	CCGCTC	1 cut(s)	1174
MboII	GAAGA	8 cut(s)	284, 407, 434, 565, 620, 687, 725, 885
MflI	RGATCY	3 cut(s)	467, 519, 860
MhlI	GDGCHC	1 cut(s)	336
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	47, 544, 764
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	1126, 1132, 1138
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	426
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	1022
MslI	CAYNNNNRTG	3 cut(s)	126, 435, 653
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	951
MspR9I	CCNGG	1 cut(s)	1004
MvaI	CCWGG	1 cut(s)	1004
MwoI	GCNNNNNNNGC	5 cut(s)	645, 780, 835, 1045, 1054
NlaIII	CATG	4 cut(s)	206, 285, 434, 527
NlaIV	GGNNCC	2 cut(s)	649, 862
NmuCI	GTSAC	2 cut(s)	155, 689
OliI	CACNNNNGTG	1 cut(s)	653
PcsI	WCGNNNNNNNCGW	2 cut(s)	30, 415
PdmI	GAANNNNTTC	1 cut(s)	426
PfeI	GAWTC	3 cut(s)	563, 890, 1154
PflFI	GACNNNGTC	1 cut(s)	1010
PkrI	GCNGC	2 cut(s)	1107, 1176
PleI	GAGTC	3 cut(s)	1126, 1132, 1138
PpsI	GAGTC	3 cut(s)	1126, 1132, 1138
PsiI	TTATAA	1 cut(s)	624
Psp6I	CCWGG	1 cut(s)	1002
PspGI	CCWGG	1 cut(s)	1002
PspN4I	GGNNCC	2 cut(s)	649, 862
PstNI	CAGNNNCTG	1 cut(s)	1206
PsuI	RGATCY	3 cut(s)	467, 519, 860
PsyI	GACNNNGTC	1 cut(s)	1010
RsaI	GTAC	1 cut(s)	490
RsaNI	GTAC	1 cut(s)	489
RseI	CAYNNNNRTG	3 cut(s)	126, 435, 653
SaqAI	TTAA	1 cut(s)	1022
SatI	GCNGC	2 cut(s)	1106, 1175
ScaI	AGTACT	1 cut(s)	490
SchI	GAGTC	3 cut(s)	1126, 1132, 1138
ScrFI	CCNGG	1 cut(s)	1004
SduI	GDGCHC	1 cut(s)	336
SfaNI	GCATC	4 cut(s)	859, 937, 961, 1044
SmiMI	CAYNNNNRTG	3 cut(s)	126, 435, 653
Sse9I	AATT	3 cut(s)	47, 544, 764
SsiI	CCGC	2 cut(s)	1106, 1174
SspMI	CTAG	2 cut(s)	297, 1182
StyD4I	CCNGG	1 cut(s)	1002
TaaI	ACNGT	2 cut(s)	812, 1012
TaiI	ACGT	2 cut(s)	421, 439
TaqI	TCGA	2 cut(s)	102, 1014
TasI	AATT	3 cut(s)	47, 544, 764
TatI	WGTACW	1 cut(s)	488
TauI	GCSGC	2 cut(s)	1108, 1177
TfiI	GAWTC	3 cut(s)	563, 890, 1154
Tru1I	TTAA	1 cut(s)	1022
Tru9I	TTAA	1 cut(s)	1022
TscAI	CASTG	1 cut(s)	1080
TseFI	GTSAC	2 cut(s)	155, 689
Tsp45I	GTSAC	2 cut(s)	155, 689
TspDTI	ATGAA	4 cut(s)	59, 249, 419, 747
TspRI	CASTG	1 cut(s)	1080
Tth111I	GACNNNGTC	1 cut(s)	1010
XapI	RAATTY	2 cut(s)	47, 544
XmnI	GAANNNNTTC	1 cut(s)	426
XspI	CTAG	2 cut(s)	297, 1182
ZrmI	AGTACT	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.