atfip1 v ,atfips5,fip1 v ,fips5
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G58040 AT5G58040 |
| fragaria_vesca | FvH4_1g01180 |
| malus_domestica | MD02G1009900.v1.1 |
| prunus_persica | Prupe.7G260100_v2.0.a1 Prupe.7G260100_v2.0.a1 Prupe.7G260100_v2.0.a1 |
| pyrus_communis | pycom02g00860 pycom02g00870 pycom11g19220 pycom15g13900 |
| rosa_chinensis | RchiOBHm_Chr2g0085981 |
| rosa_laevigata | RLG00000015731 |
| rosa_multiflora | Rmu_ssc0000355.1_g000025 |
| rosa_roxburghii | Rroxscaffold_2G00154880 |
| rosa_rugosa | Rorug01G0464800 Rorug01G0464800 |
| rosa_samantha | Rh2AG014000 Rh2BG014500 Rh2CG015000 Rh2DG016300 |
| rosa_wichuraiana | Rw2G001240 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 279 |
| Acc36I | ACCTGC | 1 cut(s) | 2715 |
| Acc65I | GGTACC | 1 cut(s) | 935 |
| AccB1I | GGYRCC | 3 cut(s) | 88, 935, 3467 |
| AccI | GTMKAC | 3 cut(s) | 1062, 1921, 2338 |
| AccII | CGCG | 3 cut(s) | 404, 1005, 1968 |
| AclI | AACGTT | 1 cut(s) | 1426 |
| AcoI | YGGCCR | 3 cut(s) | 396, 1448, 3965 |
| AcsI | RAATTY | 7 cut(s) | 17, 322, 952, 1025, 1309, 1874, 3358 |
| AcuI | CTGAAG | 4 cut(s) | 1098, 1708, 2553, 3924 |
| AcvI | CACGTG | 1 cut(s) | 1826 |
| AcyI | GRCGYC | 4 cut(s) | 89, 141, 276, 375 |
| AfaI | GTAC | 5 cut(s) | 937, 973, 2396, 3149, 3304 |
| AfeI | AGCGCT | 1 cut(s) | 3845 |
| AflII | CTTAAG | 1 cut(s) | 3005 |
| AflIII | ACRYGT | 1 cut(s) | 2361 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 2298, 2330, 2368, 2400 |
| Alw21I | GWGCWC | 2 cut(s) | 621, 1825 |
| Alw26I | GTCTC | 8 cut(s) | 790, 907, 1587, 1860, 2000, 3155, 3412, 3893 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1283, 1475, 2347 |
| Ama87I | CYCGRG | 2 cut(s) | 850, 2272 |
| Aor51HI | AGCGCT | 1 cut(s) | 3845 |
| ApoI | RAATTY | 7 cut(s) | 17, 322, 952, 1025, 1309, 1874, 3358 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 34 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2250, 2808 |
| Asp718I | GGTACC | 1 cut(s) | 935 |
| AspLEI | GCGC | 5 cut(s) | 91, 97, 406, 3558, 3846 |
| AspS9I | GGNCC | 9 cut(s) | 626, 722, 836, 881, 1736, 1762, 2788, 2818, 3482 |
| AsuC2I | CCSGG | 5 cut(s) | 387, 443, 851, 852, 891 |
| AvaI | CYCGRG | 2 cut(s) | 850, 2272 |
| AvaII | GGWCC | 6 cut(s) | 722, 836, 881, 1762, 2788, 3482 |
| BamHI | GGATCC | 4 cut(s) | 1660, 2407, 2570, 3653 |
| BanI | GGYRCC | 3 cut(s) | 88, 935, 3467 |
| BanII | GRGCYC | 1 cut(s) | 3137 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3012, 3044 |
| BauI | CACGAG | 2 cut(s) | 185, 2112 |
| BbrPI | CACGTG | 1 cut(s) | 1826 |
| BbsI | GAAGAC | 4 cut(s) | 144, 2160, 3093, 3435 |
| Bbv12I | GWGCWC | 2 cut(s) | 621, 1825 |
| BbvCI | CCTCAGC | 2 cut(s) | 79, 3726 |
| BceAI | ACGGC | 6 cut(s) | 362, 435, 478, 2313, 3804, 3980 |
| BciVI | GTATCC | 2 cut(s) | 1544, 3628 |
| BclI | TGATCA | 1 cut(s) | 3742 |
| BcnI | CCSGG | 5 cut(s) | 387, 443, 851, 852, 891 |
| BcoDI | GTCTC | 8 cut(s) | 790, 907, 1587, 1860, 2000, 3155, 3412, 3893 |
| BfaI | CTAG | 6 cut(s) | 158, 212, 255, 1851, 2412, 3111 |
| BfmI | CTRYAG | 5 cut(s) | 944, 1521, 2659, 2813, 3081 |
| BfoI | RGCGCY | 3 cut(s) | 92, 3559, 3847 |
| BfrI | CTTAAG | 1 cut(s) | 3005 |
| BfuAI | ACCTGC | 1 cut(s) | 2715 |
| BfuI | GTATCC | 2 cut(s) | 1544, 3628 |
| BglII | AGATCT | 4 cut(s) | 25, 1255, 1832, 3281 |
| BmcAI | AGTACT | 1 cut(s) | 3304 |
| Bme18I | GGWCC | 6 cut(s) | 722, 836, 881, 1762, 2788, 3482 |
| BmeT110I | CYCGRG | 2 cut(s) | 850, 2272 |
| BmgT120I | GGNCC | 9 cut(s) | 626, 722, 836, 881, 1736, 1762, 2788, 2818, 3482 |
| BmrI | ACTGGG | 2 cut(s) | 775, 1767 |
| BmsI | GCATC | 4 cut(s) | 1462, 3229, 3652, 3862 |
| BmuI | ACTGGG | 2 cut(s) | 775, 1767 |
| BpiI | GAAGAC | 4 cut(s) | 144, 2160, 3093, 3435 |
| BpmI | CTGGAG | 4 cut(s) | 861, 931, 1171, 1248 |
| Bpu10I | CCTNAGC | 2 cut(s) | 79, 3726 |
| BpuEI | CTTGAG | 2 cut(s) | 113, 1420 |
| BpuMI | CCSGG | 5 cut(s) | 387, 443, 851, 852, 891 |
| Bsa29I | ATCGAT | 1 cut(s) | 117 |
| BsaAI | YACGTR | 1 cut(s) | 1826 |
| BsaBI | GATNNNNATC | 4 cut(s) | 1254, 2406, 2505, 3711 |
| BsaHI | GRCGYC | 4 cut(s) | 89, 141, 276, 375 |
| BsaI | GGTCTC | 3 cut(s) | 790, 907, 1587 |
| BsaWI | WCCGGW | 2 cut(s) | 359, 724 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 199, 229, 629, 659, 2368, 2398 |
| Bse118I | RCCGGY | 3 cut(s) | 91, 628, 1446 |
| Bse3DI | GCAATG | 2 cut(s) | 574, 3857 |
| Bse8I | GATNNNNATC | 4 cut(s) | 1254, 2406, 2505, 3711 |
| BseCI | ATCGAT | 1 cut(s) | 117 |
| BseJI | GATNNNNATC | 4 cut(s) | 1254, 2406, 2505, 3711 |
| BseMI | GCAATG | 2 cut(s) | 574, 3857 |
| BseMII | CTCAG | 6 cut(s) | 93, 1482, 3672, 3717, 3888, 3939 |
| BseX3I | CGGCCG | 1 cut(s) | 396 |
| BseYI | CCCAGC | 3 cut(s) | 66, 163, 2014 |
| BsgI | GTGCAG | 1 cut(s) | 804 |
| Bsh1236I | CGCG | 3 cut(s) | 404, 1005, 1968 |
| Bsh1285I | CGRYCG | 3 cut(s) | 117, 399, 895 |
| BshNI | GGYRCC | 3 cut(s) | 88, 935, 3467 |
| BshVI | ATCGAT | 1 cut(s) | 117 |
| BsiEI | CGRYCG | 3 cut(s) | 117, 399, 895 |
| BsiHKAI | GWGCWC | 2 cut(s) | 621, 1825 |
| BsiHKCI | CYCGRG | 2 cut(s) | 850, 2272 |
| BslFI | GGGAC | 6 cut(s) | 473, 509, 833, 1775, 1822, 2801 |
| BsmAI | GTCTC | 8 cut(s) | 790, 907, 1587, 1860, 2000, 3155, 3412, 3893 |
| BsmFI | GGGAC | 6 cut(s) | 473, 509, 833, 1775, 1822, 2801 |
| BsmI | GAATGC | 2 cut(s) | 1464, 3739 |
| Bso31I | GGTCTC | 3 cut(s) | 790, 907, 1587 |
| BsoBI | CYCGRG | 2 cut(s) | 850, 2272 |
| Bsp1286I | GDGCHC | 3 cut(s) | 621, 1825, 3137 |
| Bsp19I | CCATGG | 1 cut(s) | 2749 |
| BspCNI | CTCAG | 6 cut(s) | 92, 1481, 3671, 3718, 3889, 3940 |
| BspDI | ATCGAT | 1 cut(s) | 117 |
| BspFNI | CGCG | 3 cut(s) | 404, 1005, 1968 |
| BspMAI | CTGCAG | 4 cut(s) | 948, 1525, 2817, 3085 |
| BspMI | ACCTGC | 1 cut(s) | 2715 |
| BspQI | GCTCTTC | 2 cut(s) | 1387, 1813 |
| BspT107I | GGYRCC | 3 cut(s) | 88, 935, 3467 |
| BspTI | CTTAAG | 1 cut(s) | 3005 |
| BspTNI | GGTCTC | 3 cut(s) | 790, 907, 1587 |
| BsrDI | GCAATG | 2 cut(s) | 574, 3857 |
| BsrFI | RCCGGY | 3 cut(s) | 91, 628, 1446 |
| BssAI | RCCGGY | 3 cut(s) | 91, 628, 1446 |
| BssNI | GRCGYC | 4 cut(s) | 89, 141, 276, 375 |
| BssSI | CACGAG | 2 cut(s) | 185, 2112 |
| BssT1I | CCWWGG | 5 cut(s) | 1088, 2160, 2540, 2749, 3433 |
| Bst2BI | CACGAG | 2 cut(s) | 185, 2112 |
| Bst4CI | ACNGT | 9 cut(s) | 110, 500, 614, 1073, 1886, 3166, 3176, 3611, 3817 |
| Bst6I | CTCTTC | 6 cut(s) | 570, 645, 1387, 1813, 2540, 3499 |
| BstACI | GRCGYC | 4 cut(s) | 89, 141, 276, 375 |
| BstAFI | CTTAAG | 1 cut(s) | 3005 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3859 |
| BstBAI | YACGTR | 1 cut(s) | 1826 |
| BstC8I | GCNNGC | 9 cut(s) | 93, 630, 819, 1366, 1370, 1718, 1966, 3078, 3969 |
| BstDEI | CTNAG | 6 cut(s) | 79, 1468, 3658, 3726, 3897, 3948 |
| BstDSI | CCRYGG | 1 cut(s) | 2749 |
| BstEII | GGTNACC | 1 cut(s) | 1994 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1601 |
| BstFNI | CGCG | 3 cut(s) | 404, 1005, 1968 |
| BstH2I | RGCGCY | 3 cut(s) | 92, 3559, 3847 |
| BstHHI | GCGC | 5 cut(s) | 91, 97, 406, 3558, 3846 |
| BstMAI | GTCTC | 8 cut(s) | 790, 907, 1587, 1860, 2000, 3155, 3412, 3893 |
| BstMCI | CGRYCG | 3 cut(s) | 117, 399, 895 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 471, 625, 717, 1177, 2455, 3465, 3850, 3859 |
| BstNSI | RCATGY | 2 cut(s) | 1751, 2365 |
| BstPI | GGTNACC | 1 cut(s) | 1994 |
| BstSFI | CTRYAG | 5 cut(s) | 944, 1521, 2659, 2813, 3081 |
| BstUI | CGCG | 3 cut(s) | 404, 1005, 1968 |
| BstV2I | GAAGAC | 4 cut(s) | 144, 2160, 3093, 3435 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1751 |
| BstZI | CGGCCG | 1 cut(s) | 396 |
| Bsu15I | ATCGAT | 1 cut(s) | 117 |
| BsuI | GTATCC | 2 cut(s) | 1544, 3628 |
| BsuTUI | ATCGAT | 1 cut(s) | 117 |
| BtgI | CCRYGG | 1 cut(s) | 2749 |
| BtgZI | GCGATG | 1 cut(s) | 501 |
| BtsI | GCAGTG | 1 cut(s) | 3316 |
| BtsIMutI | CAGTG | 5 cut(s) | 505, 619, 1908, 3181, 3316 |
| BveI | ACCTGC | 1 cut(s) | 2715 |
| Cac8I | GCNNGC | 9 cut(s) | 93, 630, 819, 1366, 1370, 1718, 1966, 3078, 3969 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1283, 1475, 2347 |
| CfoI | GCGC | 5 cut(s) | 91, 97, 406, 3558, 3846 |
| Cfr10I | RCCGGY | 3 cut(s) | 91, 628, 1446 |
| Cfr13I | GGNCC | 9 cut(s) | 626, 722, 836, 881, 1736, 1762, 2788, 2818, 3482 |
| Cfr9I | CCCGGG | 1 cut(s) | 850 |
| ClaI | ATCGAT | 1 cut(s) | 117 |
| CpoI | CGGWCCG | 1 cut(s) | 722 |
| CseI | GACGC | 3 cut(s) | 149, 383, 1361 |
| CsiI | ACCWGGT | 3 cut(s) | 799, 976, 3484 |
| Csp6I | GTAC | 5 cut(s) | 936, 972, 2395, 3148, 3303 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 979, 1014, 1386, 1421 |
| CspI | CGGWCCG | 1 cut(s) | 722 |
| CviQI | GTAC | 5 cut(s) | 936, 972, 2395, 3148, 3303 |
| DdeI | CTNAG | 6 cut(s) | 79, 1468, 3658, 3726, 3897, 3948 |
| DinI | GGCGCC | 1 cut(s) | 90 |
| DraI | TTTAAA | 1 cut(s) | 3546 |
| EaeI | YGGCCR | 3 cut(s) | 396, 1448, 3965 |
| EagI | CGGCCG | 1 cut(s) | 396 |
| Eam1104I | CTCTTC | 6 cut(s) | 570, 645, 1387, 1813, 2540, 3499 |
| EarI | CTCTTC | 6 cut(s) | 570, 645, 1387, 1813, 2540, 3499 |
| EciI | GGCGGA | 7 cut(s) | 483, 489, 495, 623, 647, 686, 726 |
| EclXI | CGGCCG | 1 cut(s) | 396 |
| Eco130I | CCWWGG | 5 cut(s) | 1088, 2160, 2540, 2749, 3433 |
| Eco147I | AGGCCT | 1 cut(s) | 1616 |
| Eco24I | GRGCYC | 1 cut(s) | 3137 |
| Eco31I | GGTCTC | 3 cut(s) | 790, 907, 1587 |
| Eco32I | GATATC | 2 cut(s) | 331, 3394 |
| Eco47I | GGWCC | 6 cut(s) | 722, 836, 881, 1762, 2788, 3482 |
| Eco47III | AGCGCT | 1 cut(s) | 3845 |
| Eco52I | CGGCCG | 1 cut(s) | 396 |
| Eco57I | CTGAAG | 4 cut(s) | 1098, 1708, 2553, 3924 |
| Eco72I | CACGTG | 1 cut(s) | 1826 |
| Eco88I | CYCGRG | 2 cut(s) | 850, 2272 |
| Eco91I | GGTNACC | 1 cut(s) | 1994 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1601 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3482 |
| EcoO65I | GGTNACC | 1 cut(s) | 1994 |
| EcoRI | GAATTC | 3 cut(s) | 17, 1025, 3358 |
| EcoRV | GATATC | 2 cut(s) | 331, 3394 |
| EcoT14I | CCWWGG | 5 cut(s) | 1088, 2160, 2540, 2749, 3433 |
| EcoT22I | ATGCAT | 1 cut(s) | 1293 |
| EcoT38I | GRGCYC | 1 cut(s) | 3137 |
| EgeI | GGCGCC | 1 cut(s) | 90 |
| EheI | GGCGCC | 1 cut(s) | 90 |
| ErhI | CCWWGG | 5 cut(s) | 1088, 2160, 2540, 2749, 3433 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1604, 1636, 2793, 2825 |
| FaqI | GGGAC | 6 cut(s) | 473, 509, 833, 1775, 1822, 2801 |
| FauI | CCCGC | 4 cut(s) | 948, 1954, 1973, 2841 |
| FbaI | TGATCA | 1 cut(s) | 3742 |
| FblI | GTMKAC | 3 cut(s) | 1062, 1921, 2338 |
| FriOI | GRGCYC | 1 cut(s) | 3137 |
| FspBI | CTAG | 6 cut(s) | 158, 212, 255, 1851, 2412, 3111 |
| GlaI | GCGC | 5 cut(s) | 90, 96, 405, 3557, 3845 |
| GsaI | CCCAGC | 3 cut(s) | 70, 167, 2018 |
| GsuI | CTGGAG | 4 cut(s) | 861, 931, 1171, 1248 |
| HaeII | RGCGCY | 3 cut(s) | 92, 3559, 3847 |
| HgaI | GACGC | 3 cut(s) | 149, 383, 1361 |
| HhaI | GCGC | 5 cut(s) | 91, 97, 406, 3558, 3846 |
| Hin1I | GRCGYC | 4 cut(s) | 89, 141, 276, 375 |
| Hin6I | GCGC | 5 cut(s) | 89, 95, 404, 3556, 3844 |
| HinP1I | GCGC | 5 cut(s) | 89, 95, 404, 3556, 3844 |
| HincII | GTYRAC | 3 cut(s) | 1063, 2119, 3763 |
| HindII | GTYRAC | 3 cut(s) | 1063, 2119, 3763 |
| HindIII | AAGCTT | 1 cut(s) | 1714 |
| Hpy99I | CGWCG | 8 cut(s) | 11, 14, 41, 149, 152, 377, 590, 593 |
| HpyCH4III | ACNGT | 9 cut(s) | 110, 500, 614, 1073, 1886, 3166, 3176, 3611, 3817 |
| HpyCH4IV | ACGT | 9 cut(s) | 39, 276, 1426, 1695, 1825, 1924, 2260, 2554, 3316 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 471, 625, 717, 1177, 2455, 3465, 3850, 3859 |
| HpyF3I | CTNAG | 6 cut(s) | 79, 1468, 3658, 3726, 3897, 3948 |
| HpySE526I | ACGT | 9 cut(s) | 39, 276, 1426, 1695, 1825, 1924, 2260, 2554, 3316 |
| Hsp92I | GRCGYC | 4 cut(s) | 89, 141, 276, 375 |
| HspAI | GCGC | 5 cut(s) | 89, 95, 404, 3556, 3844 |
| KasI | GGCGCC | 1 cut(s) | 88 |
| KpnI | GGTACC | 1 cut(s) | 939 |
| KroI | GCCGGC | 2 cut(s) | 91, 628 |
| KroNI | GCCGGC | 2 cut(s) | 93, 630 |
| Ksp22I | TGATCA | 1 cut(s) | 3742 |
| LguI | GCTCTTC | 2 cut(s) | 1387, 1813 |
| LweI | GCATC | 4 cut(s) | 1462, 3229, 3652, 3862 |
| MabI | ACCWGGT | 3 cut(s) | 799, 976, 3484 |
| MaeI | CTAG | 6 cut(s) | 158, 212, 255, 1851, 2412, 3111 |
| MaeII | ACGT | 9 cut(s) | 39, 276, 1426, 1695, 1825, 1924, 2260, 2554, 3316 |
| MfeI | CAATTG | 1 cut(s) | 2432 |
| MhlI | GDGCHC | 3 cut(s) | 621, 1825, 3137 |
| Mly113I | GGCGCC | 1 cut(s) | 89 |
| MmeI | TCCRAC | 5 cut(s) | 908, 1338, 1409, 1768, 2665 |
| Mph1103I | ATGCAT | 1 cut(s) | 1293 |
| MreI | CGCCGGCG | 1 cut(s) | 91 |
| MroNI | GCCGGC | 2 cut(s) | 91, 628 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2250, 2808 |
| MslI | CAYNNNNRTG | 3 cut(s) | 2295, 2739, 2940 |
| MspA1I | CMGCKG | 2 cut(s) | 943, 1171 |
| MspCI | CTTAAG | 1 cut(s) | 3005 |
| MunI | CAATTG | 1 cut(s) | 2432 |
| Mva1269I | GAATGC | 2 cut(s) | 1464, 3739 |
| MvnI | CGCG | 3 cut(s) | 404, 1005, 1968 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 471, 625, 717, 1177, 2455, 3465, 3850, 3859 |
| NaeI | GCCGGC | 2 cut(s) | 93, 630 |
| NarI | GGCGCC | 1 cut(s) | 89 |
| NciI | CCSGG | 5 cut(s) | 387, 443, 851, 852, 891 |
| NcoI | CCATGG | 1 cut(s) | 2749 |
| NgoMIV | GCCGGC | 2 cut(s) | 91, 628 |
| NmeAIII | GCCGAG | 1 cut(s) | 2982 |
| NsiI | ATGCAT | 1 cut(s) | 1293 |
| NspI | RCATGY | 2 cut(s) | 1751, 2365 |
| PasI | CCCWGGG | 2 cut(s) | 1319, 2697 |
| PceI | AGGCCT | 1 cut(s) | 1616 |
| PciI | ACATGT | 1 cut(s) | 2361 |
| PciSI | GCTCTTC | 2 cut(s) | 1387, 1813 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 147, 3313 |
| PctI | GAATGC | 2 cut(s) | 1464, 3739 |
| PdiI | GCCGGC | 2 cut(s) | 93, 630 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2250, 2808 |
| PfeI | GAWTC | 9 cut(s) | 221, 239, 296, 369, 382, 1514, 2313, 3683, 3944 |
| PflFI | GACNNNGTC | 2 cut(s) | 1926, 3486 |
| PfoI | TCCNGGA | 1 cut(s) | 838 |
| Ple19I | CGATCG | 1 cut(s) | 117 |
| PluTI | GGCGCC | 1 cut(s) | 92 |
| PmaCI | CACGTG | 1 cut(s) | 1826 |
| PmlI | CACGTG | 1 cut(s) | 1826 |
| Ppu21I | YACGTR | 1 cut(s) | 1826 |
| PpuMI | RGGWCCY | 1 cut(s) | 3482 |
| PscI | ACATGT | 1 cut(s) | 2361 |
| Psp1406I | AACGTT | 1 cut(s) | 1426 |
| Psp5II | RGGWCCY | 1 cut(s) | 3482 |
| PspCI | CACGTG | 1 cut(s) | 1826 |
| PspEI | GGTNACC | 1 cut(s) | 1994 |
| PspFI | CCCAGC | 3 cut(s) | 66, 163, 2014 |
| PspPI | GGNCC | 9 cut(s) | 626, 722, 836, 881, 1736, 1762, 2788, 2818, 3482 |
| PspPPI | RGGWCCY | 1 cut(s) | 3482 |
| PstI | CTGCAG | 4 cut(s) | 948, 1525, 2817, 3085 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1283, 1475, 2347 |
| PsyI | GACNNNGTC | 2 cut(s) | 1926, 3486 |
| PvuI | CGATCG | 1 cut(s) | 117 |
| PvuII | CAGCTG | 1 cut(s) | 1171 |
| RsaI | GTAC | 5 cut(s) | 937, 973, 2396, 3149, 3304 |
| RsaNI | GTAC | 5 cut(s) | 936, 972, 2395, 3148, 3303 |
| RseI | CAYNNNNRTG | 3 cut(s) | 2295, 2739, 2940 |
| Rsr2I | CGGWCCG | 1 cut(s) | 722 |
| RsrII | CGGWCCG | 1 cut(s) | 722 |
| SalI | GTCGAC | 1 cut(s) | 1061 |
| SapI | GCTCTTC | 2 cut(s) | 1387, 1813 |
| Sau96I | GGNCC | 9 cut(s) | 626, 722, 836, 881, 1736, 1762, 2788, 2818, 3482 |
| ScaI | AGTACT | 1 cut(s) | 3304 |
| SduI | GDGCHC | 3 cut(s) | 621, 1825, 3137 |
| SexAI | ACCWGGT | 3 cut(s) | 799, 976, 3484 |
| SfaNI | GCATC | 4 cut(s) | 1462, 3229, 3652, 3862 |
| SfcI | CTRYAG | 5 cut(s) | 944, 1521, 2659, 2813, 3081 |
| SfoI | GGCGCC | 1 cut(s) | 90 |
| SgrAI | CRCCGGYG | 1 cut(s) | 91 |
| SinI | GGWCC | 6 cut(s) | 722, 836, 881, 1762, 2788, 3482 |
| SmaI | CCCGGG | 1 cut(s) | 852 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 2295, 2739, 2940 |
| SmlI | CTYRAG | 3 cut(s) | 128, 1435, 3005 |
| SmoI | CTYRAG | 3 cut(s) | 128, 1435, 3005 |
| SseBI | AGGCCT | 1 cut(s) | 1616 |
| SspDI | GGCGCC | 1 cut(s) | 88 |
| SspI | AATATT | 1 cut(s) | 3268 |
| SspMI | CTAG | 6 cut(s) | 158, 212, 255, 1851, 2412, 3111 |
| StuI | AGGCCT | 1 cut(s) | 1616 |
| StyI | CCWWGG | 5 cut(s) | 1088, 2160, 2540, 2749, 3433 |
| TaaI | ACNGT | 9 cut(s) | 110, 500, 614, 1073, 1886, 3166, 3176, 3611, 3817 |
| TaiI | ACGT | 9 cut(s) | 42, 279, 1429, 1698, 1828, 1927, 2263, 2557, 3319 |
| TaqII | GACCGA | 1 cut(s) | 149 |
| TatI | WGTACW | 1 cut(s) | 3302 |
| TauI | GCSGC | 7 cut(s) | 236, 249, 401, 404, 425, 468, 671 |
| TfiI | GAWTC | 9 cut(s) | 221, 239, 296, 369, 382, 1514, 2313, 3683, 3944 |
| TscAI | CASTG | 5 cut(s) | 505, 619, 1908, 3181, 3316 |
| TspGWI | ACGGA | 7 cut(s) | 323, 1202, 1557, 1920, 2382, 2496, 3708 |
| TspMI | CCCGGG | 1 cut(s) | 850 |
| TspRI | CASTG | 5 cut(s) | 505, 619, 1908, 3181, 3316 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1926, 3486 |
| Vha464I | CTTAAG | 1 cut(s) | 3005 |
| VpaK11BI | GGWCC | 6 cut(s) | 722, 836, 881, 1762, 2788, 3482 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1601 |
| XapI | RAATTY | 7 cut(s) | 17, 322, 952, 1025, 1309, 1874, 3358 |
| XceI | RCATGY | 2 cut(s) | 1751, 2365 |
| XmaI | CCCGGG | 1 cut(s) | 850 |
| XmiI | GTMKAC | 3 cut(s) | 1062, 1921, 2338 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2250, 2808 |
| XspI | CTAG | 6 cut(s) | 158, 212, 255, 1851, 2412, 3111 |
| ZraI | GACGTC | 1 cut(s) | 277 |
| ZrmI | AGTACT | 1 cut(s) | 3304 |
| Zsp2I | ATGCAT | 1 cut(s) | 1293 |