Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009289

Physical Location & Seq

Genomic Coordinates Reverse (-)

55721295 .. 55728706

Gene Structure 7412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0464800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2982 bp

ATGAGGAAAAGGAGAGATGATTCTGGTGATGCTGATAAACATCTAGATTATGTGGAAGACATCAATGGTGGGCGATTATCATCTAGGGATGATTTAGGCAAGGAAGGCAGGCAGAAAGATGAGAAGCGAAAGGATGAGAGGTATAGAGAGAAGTTTCGTGAAGACATGGATAGGGACAATAAGAACCGAGATGAAAAGCAAAGAGATGAGAAGCAAAGAGATGACCGCTCTACAAAAGATCATTTAAGTAGCAAGTCTGAGGATAAGCATTTAAGGGATGAAAAAGATATAAGTGATATGCAACAGAAGAGATCCAAGCTTCAGGATGGTGAGCGCAAAGGGGAGCATGACCGTGATCGCAATCGGGACCGTGACTCATATCATGTTCGTGAGCGTGAGCGGTACCATGACCGTGAACGTGAACATGGGTGGGATCATGGCCGCGACCGTGATCGCGATTATGATCGGGATTGGGACTGGGATCGTGAGAGGGATGGAGATCGTGACCGAGAGAGGAATCATGATCGTGAGCGAGCTCGAGACCGTGATAAAGATGGGGATCGAGATCGTGAGTATGATCGGGACTATGATGGGTCACATCTTGATGATCGCAGCACAAGATATAAAGATAGTAGCAGAGGAAAGAGAAGATCTCCAGATGATCGTGATGATTCTACTGATACTAAATCCAGAGGTGTCAAACCTAGGTATTCTGACTTTGAAAAGAAGTCATCAAGTGGTGATAGGGTTGAGTCGGATGTTAACAAGGGAAGATCTCAGTCCCGGCAAGCTTATGTAGATACTATATTAGGCAGCAATAAACGAAGGACTTCTCCCAGTTCAAATTCAAATCTTGGCATAGATGAGTACAGGTATGCAAATCCAGAAGATATGAAATATAGGGATTCTATGGCAGAGCAGAGGTCCAAAGCACTTCCTCCCAGAGATGTATCTGGAGTTTCGGAAAGAGGTTCCAAGTACAGGTCAATGGAGAAGTCCAGTAAAATGGACGATAGCCATTTAGGGGAGCTTTCAAATGAAAAACCTTCAGGTTCTAAGGCTTCACCAATGGCATTGATGGAAAGATCTCCTTCATCATCAAGTATTGACCGTAGATATATGAACAAAACTGCTGTCAGACGAAGTATTGACATTGAAGAAACAGGTCGGAGAAGCAGTGCTTCTATGGATAATAGAGATTTCTCTAATAGTGAGGATAGACCGAGTCGGGACTTAGCATTGGAGAAGCCCTTTGTGGATGATTCCTCCCCCGCTGATTCATCCACTCACAATAGAAGTGGTCAGAGTAATTTTTCTTCTTCATTTGCTCCACATCCTAATTTCAGGGCTGGAGTTGAAAGCCCTTCCTTTGCTGGTTCAGTGGAAGACGACGGTAGAGTAAACTCTAGTGCACGTTATAGGAGGAGTAGTGATCCCAATTTGGTTAGAGGGCCTTGGAGAGGCGTCCCAAACTGGCCTTCACCAGTTCCAAATGGTTTTATGCCTTTCCCACACGGGGGACCTCATGTCGGTTTTCAAGGGATGCTGCCACAGTTTTCGGCTCCGCCACATTTTGGTGTTAGACCTTCAATGGAGATTAATCATTATGCGATTCCTTATCAAATTGCTGATGATAGGTTTTCCAGTCACTTGCGCCCACTAGGGTCTCAGAACATTATGGAAGGTTTGGGCCCTTCTCACATGCATCCATGGGATGGGAGTACTGGAGCCTTTAGGGATGATTCTAACAGTTATGGGGCAGAATGGGATCAGAACAGGCATCCAATGAGTGCACGGGGATGGGATCCCAGTGCTGAGCCATGGAAAGTACATAACAATGATGTAAAAAGGGACTTGCCCTCCCCATCTCCCAGAAATGATTATCCAGTGCAGACCCCTGTGGATGATGGTGTAGCTGGGCAGGTAGGTCAGATGTCTCATCATGAAGATAACCTGGATCTTGGAGTTCATACTAAAACAGCTGAGACTAGGTCCACTATAGCTTCTCCTATGAAAGAGTCGCCTATAACTCGTGAGAAGTCACAGGATGGCTCTAAATCGGCAATTGATAAAGTCCCTTCTCTAAGTCATTATTATCTTTCCAAGCTTGACATTTCAGCAGAACTTGCTCATACTGAGTTGTACAGCCAGTGTCTGAGCCTGCTGGATACTGAGGGGAGTGCAACTGTTGATGAAGATCCTACTATGCATACGATATTAAAGGCTGCAACAGCAGGATTGAAATCGTCCAAAACATTATTGAGTTCCTCACTTTTTCCACCTTTAAAAGATTCTGTTTTTCAGAAAGCTATGGATCTTTACAAGAAGCAGAGGATGGAAGCAAAAGGCATTTCATTTGTTGCTGGTGGAAGATTGGATATTATTTTCGCATCAAATCAGAAGAACATGGAAGCAAAAGTTTGTGAAGTGGAGAAAGTGGAGCAGCTAGTGTCGAAGTCTGATGCAGAAATGGCAGATGCTCCAGTGTCAAGTTCAGATGAGAAGAATGCTCTTGTTACTGTTTCAACAGATAGTGTTAAGGAGCTGGCTTCAACTCCTGGTCACGAGATGCAAAATCACATCTCTCTTGGTTCTCCCAAGTTGGAAATGGCAGTTGAAGATTCTAGTCAAGTTGAACCAGAAGAGCCTCAAACAATTCCAAATGGGGTGGAAATGGATTCAATGTCTTCAGAGCAGGAGAAACTAGAGGTGGATAATGCAGATGGTTTCTCGTTACTTGATAATAAAGCATCCCTTCCTACTAATACCACTTTACCTGTGGATGGCTATGGCGTGAACAAGGTCAAAGATGACAATTCTATTTATCATGCCGAGGAAGGCGTGGCTGTTGATGCAATAAGGGGTCCATTAGTATTACCAGATGGTTCCCCAAAGGCTTGTGAGGCTTTGATGTCTGGGTCTAATGAGTCTGATTCGGTAATTTTAAGTCGGATACATCATTCTCCTGAAAGTACACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0042802 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fip1

Protein Analysis

993

Amino Acids

112.09

Weight (kDa)

5.66

Isoelectric Point (pI)

56.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58040 AT5G58040
fragaria_vesca	FvH4_1g01180
malus_domestica	MD02G1009900.v1.1
prunus_persica	Prupe.7G260100_v2.0.a1 Prupe.7G260100_v2.0.a1 Prupe.7G260100_v2.0.a1
pyrus_communis	pycom02g00860 pycom02g00870 pycom11g19220 pycom15g13900
rosa_chinensis	RchiOBHm_Chr2g0085981
rosa_laevigata	RLG00000015731
rosa_multiflora	Rmu_ssc0000355.1_g000025
rosa_roxburghii	Rroxscaffold_2G00154880
rosa_rugosa	Rorug01G0464800 Rorug01G0464800
rosa_samantha	Rh2AG014000 Rh2BG014500 Rh2CG015000 Rh2DG016300
rosa_wichuraiana	Rw2G001240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1912
Acc65I	GGTACC	1 cut(s)	402
AccB1I	GGYRCC	1 cut(s)	402
AccB7I	CCANNNNNTGG	2 cut(s)	1574, 1715
AccBSI	CCGCTC	2 cut(s)	228, 400
AccII	CGCG	2 cut(s)	444, 456
AciI	CCGC	5 cut(s)	226, 400, 442, 1272, 1565
AcoI	YGGCCR	1 cut(s)	439
AcsI	RAATTY	1 cut(s)	844
AcuI	CTGAAG	3 cut(s)	305, 1032, 2673
AcyI	GRCGYC	1 cut(s)	1464
AfaI	GTAC	7 cut(s)	404, 869, 980, 1723, 1830, 2144, 2974
AfiI	CCNNNNNNNGG	9 cut(s)	981, 1024, 1460, 1516, 1517, 1529, 1574, 1715, 2783
AhdI	GACNNNNNGTC	1 cut(s)	1526
AjnI	CCWGG	2 cut(s)	1953, 2557
AjuI	GAANNNNNNNTTGG	2 cut(s)	1462, 1494
Alw21I	GWGCWC	3 cut(s)	538, 1414, 1795
Alw26I	GTCTC	4 cut(s)	534, 1671, 1941, 1979
Alw44I	GTGCAC	2 cut(s)	1410, 1791
AlwNI	CAGNNNCTG	1 cut(s)	2155
Ama87I	CYCGRG	1 cut(s)	537
AoxI	GGCC	4 cut(s)	439, 1451, 1475, 1690
ApaI	GGGCCC	1 cut(s)	1694
ApaLI	GTGCAC	2 cut(s)	1410, 1791
ApeKI	GCWGC	5 cut(s)	612, 813, 1546, 2225, 2443
ApoI	RAATTY	1 cut(s)	844
ArsI	GACNNNNNNTTYG	2 cut(s)	1119, 1151
AseI	ATTAAT	1 cut(s)	1599
Asp700I	GAANNNNTTC	1 cut(s)	829
Asp718I	GGTACC	1 cut(s)	402
AspA2I	CCTAGG	1 cut(s)	704
AspLEI	GCGC	2 cut(s)	336, 1656
AspS9I	GGNCC	8 cut(s)	367, 924, 1451, 1520, 1690, 1691, 1992, 2864
AsuC2I	CCSGG	1 cut(s)	784
AsuHPI	GGTGA	5 cut(s)	38, 341, 752, 1056, 1473
AvaI	CYCGRG	1 cut(s)	537
AvaII	GGWCC	5 cut(s)	367, 924, 1520, 1992, 2864
AvrII	CCTAGG	1 cut(s)	704
BaeGI	GKGCMC	3 cut(s)	1414, 1694, 1795
BamHI	GGATCC	1 cut(s)	1804
BanI	GGYRCC	1 cut(s)	402
BanII	GRGCYC	2 cut(s)	538, 1694
BarI	GAAGNNNNNNTAC	2 cut(s)	1300, 1332
BauI	CACGAG	2 cut(s)	2031, 2564
BbsI	GAAGAC	4 cut(s)	63, 168, 1392, 2679
Bbv12I	GWGCWC	3 cut(s)	538, 1414, 1795
BbvI	GCAGC	5 cut(s)	624, 825, 1533, 2212, 2455
BciT130I	CCWGG	2 cut(s)	1955, 2559
BciVI	GTATCC	2 cut(s)	2161, 2946
BcnI	CCSGG	1 cut(s)	784
BcoDI	GTCTC	4 cut(s)	534, 1671, 1941, 1979
BfaI	CTAG	9 cut(s)	44, 84, 705, 1407, 1661, 1989, 2447, 2625, 2705
BfmI	CTRYAG	1 cut(s)	1998
BfuAI	ACCTGC	1 cut(s)	1912
BfuI	GTATCC	2 cut(s)	2161, 2946
BglII	AGATCT	3 cut(s)	650, 773, 1085
BisI	GCNGC	6 cut(s)	442, 613, 814, 1547, 2226, 2444
BlnI	CCTAGG	1 cut(s)	704
BlpI	GCTNAGC	1 cut(s)	1815
BlsI	GCNGC	6 cut(s)	443, 614, 815, 1548, 2227, 2445
BmcAI	AGTACT	1 cut(s)	1723
Bme1390I	CCNGG	3 cut(s)	784, 1955, 2559
Bme18I	GGWCC	5 cut(s)	367, 924, 1520, 1992, 2864
BmeRI	GACNNNNNGTC	1 cut(s)	1526
BmeT110I	CYCGRG	1 cut(s)	537
BmgT120I	GGNCC	8 cut(s)	367, 924, 1451, 1520, 1690, 1691, 1992, 2864
BmrFI	CCNGG	3 cut(s)	784, 1955, 2559
BmrI	ACTGGG	3 cut(s)	487, 831, 1803
BmuI	ACTGGG	3 cut(s)	487, 831, 1803
BpiI	GAAGAC	4 cut(s)	63, 168, 1392, 2679
BplI	GAGNNNNNCTC	2 cut(s)	637, 669
BpmI	CTGGAG	5 cut(s)	639, 975, 1371, 1746, 2466
Bpu1102I	GCTNAGC	1 cut(s)	1815
BpuMI	CCSGG	1 cut(s)	784
BsaBI	GATNNNNATC	9 cut(s)	39, 79, 360, 462, 498, 558, 564, 2196, 2242
BsaHI	GRCGYC	1 cut(s)	1464
BsaI	GGTCTC	2 cut(s)	534, 1671
BsaJI	CCNNGG	5 cut(s)	704, 1454, 1709, 1820, 2832
BsaXI	ACNNNNNCTCC	6 cut(s)	1162, 1192, 1414, 1444, 1844, 1874
Bsc4I	CCNNNNNNNGG	9 cut(s)	981, 1024, 1460, 1516, 1517, 1529, 1574, 1715, 2783
Bse8I	GATNNNNATC	9 cut(s)	39, 79, 360, 462, 498, 558, 564, 2196, 2242
BseBI	CCWGG	2 cut(s)	1955, 2559
BseDI	CCNNGG	5 cut(s)	704, 1454, 1709, 1820, 2832
BseJI	GATNNNNATC	9 cut(s)	39, 79, 360, 462, 498, 558, 564, 2196, 2242
BseLI	CCNNNNNNNGG	9 cut(s)	981, 1024, 1460, 1516, 1517, 1529, 1574, 1715, 2783
BseMII	CTCAG	8 cut(s)	249, 791, 1682, 1806, 1974, 2127, 2147, 2163
BseRI	GAGGAG	1 cut(s)	1438
BseSI	GKGCMC	3 cut(s)	1414, 1694, 1795
BseXI	GCAGC	5 cut(s)	624, 825, 1533, 2212, 2455
BseYI	CCCAGC	1 cut(s)	1916
BsgI	GTGCAG	1 cut(s)	1910
Bsh1236I	CGCG	2 cut(s)	444, 456
Bsh1285I	CGRYCG	1 cut(s)	448
BshFI	GGCC	4 cut(s)	441, 1453, 1477, 1692
BshNI	GGYRCC	1 cut(s)	402
BsiEI	CGRYCG	1 cut(s)	448
BsiHKAI	GWGCWC	3 cut(s)	538, 1414, 1795
BsiHKCI	CYCGRG	1 cut(s)	537
BsiSI	CCGG	1 cut(s)	784
BslI	CCNNNNNNNGG	9 cut(s)	981, 1024, 1460, 1516, 1517, 1529, 1574, 1715, 2783
BsmAI	GTCTC	4 cut(s)	534, 1671, 1941, 1979
BsmI	GAATGC	1 cut(s)	2512
BsnI	GGCC	4 cut(s)	441, 1453, 1477, 1692
Bso31I	GGTCTC	2 cut(s)	534, 1671
BsoBI	CYCGRG	1 cut(s)	537
Bsp120I	GGGCCC	1 cut(s)	1690
Bsp1286I	GDGCHC	4 cut(s)	538, 1414, 1694, 1795
Bsp1407I	TGTACA	1 cut(s)	2142
Bsp1720I	GCTNAGC	1 cut(s)	1815
Bsp19I	CCATGG	2 cut(s)	1709, 1820
Bsp68I	TCGCGA	1 cut(s)	456
BspACI	CCGC	5 cut(s)	226, 400, 442, 1272, 1565
BspANI	GGCC	4 cut(s)	441, 1453, 1477, 1692
BspCNI	CTCAG	8 cut(s)	250, 790, 1681, 1807, 1975, 2128, 2148, 2164
BspFNI	CGCG	2 cut(s)	444, 456
BspHI	TCATGA	2 cut(s)	520, 1942
BspMI	ACCTGC	1 cut(s)	1912
BspQI	GCTCTTC	1 cut(s)	2637
BspT107I	GGYRCC	1 cut(s)	402
BspTNI	GGTCTC	2 cut(s)	534, 1671
BsrBI	CCGCTC	2 cut(s)	228, 400
BsrGI	TGTACA	1 cut(s)	2142
BssECI	CCNNGG	5 cut(s)	704, 1454, 1709, 1820, 2832
BssNI	GRCGYC	1 cut(s)	1464
BssSI	CACGAG	2 cut(s)	2031, 2564
BssT1I	CCWWGG	4 cut(s)	704, 1454, 1709, 1820
Bst2BI	CACGAG	2 cut(s)	2031, 2564
Bst2UI	CCWGG	2 cut(s)	1955, 2559
Bst6I	CTCTTC	2 cut(s)	302, 2637
BstACI	GRCGYC	1 cut(s)	1464
BstAPI	GCANNNNNTGC	1 cut(s)	2126
BstAUI	TGTACA	1 cut(s)	2142
BstC8I	GCNNGC	5 cut(s)	110, 534, 789, 2162, 2547
BstDSI	CCRYGG	2 cut(s)	1709, 1820
BstENI	CCTNNNNNAGG	1 cut(s)	1458
BstFNI	CGCG	2 cut(s)	444, 456
BstHHI	GCGC	2 cut(s)	336, 1656
BstMAI	GTCTC	4 cut(s)	534, 1671, 1941, 1979
BstMCI	CGRYCG	1 cut(s)	448
BstMWI	GCNNNNNNNGC	6 cut(s)	105, 2126, 2231, 2471, 2852, 2903
BstNI	CCWGG	2 cut(s)	1955, 2559
BstNSI	RCATGY	1 cut(s)	1705
BstSCI	CCNGG	3 cut(s)	782, 1953, 2557
BstSFI	CTRYAG	1 cut(s)	1998
BstSLI	GKGCMC	3 cut(s)	1414, 1694, 1795
BstUI	CGCG	2 cut(s)	444, 456
BstV1I	GCAGC	5 cut(s)	624, 825, 1533, 2212, 2455
BstV2I	GAAGAC	4 cut(s)	63, 168, 1392, 2679
BstX2I	RGATCY	8 cut(s)	311, 650, 773, 1085, 1804, 1957, 2197, 2314
BstXI	CCANNNNNNTGG	1 cut(s)	1006
BstYI	RGATCY	8 cut(s)	311, 650, 773, 1085, 1804, 1957, 2197, 2314
BsuI	GTATCC	2 cut(s)	2161, 2946
BsuRI	GGCC	4 cut(s)	441, 1453, 1477, 1692
BtgI	CCRYGG	2 cut(s)	1709, 1820
BtsI	GCAGTG	1 cut(s)	1183
BtsIMutI	CAGTG	6 cut(s)	1183, 1386, 1816, 1893, 2156, 2490
BtuMI	TCGCGA	1 cut(s)	456
BveI	ACCTGC	1 cut(s)	1912
Cac8I	GCNNGC	5 cut(s)	110, 534, 789, 2162, 2547
CaiI	CAGNNNCTG	1 cut(s)	2155
CciI	TCATGA	2 cut(s)	520, 1942
CfoI	GCGC	2 cut(s)	336, 1656
Cfr13I	GGNCC	8 cut(s)	367, 924, 1451, 1520, 1690, 1691, 1992, 2864
CseI	GACGC	1 cut(s)	1453
Csp6I	GTAC	7 cut(s)	403, 868, 979, 1722, 1829, 2143, 2973
CspCI	CAANNNNNGTGG	4 cut(s)	1279, 1314, 2649, 2684
CviQI	GTAC	7 cut(s)	403, 868, 979, 1722, 1829, 2143, 2973
DraI	TTTAAA	1 cut(s)	2286
DriI	GACNNNNNGTC	1 cut(s)	1526
EaeI	YGGCCR	1 cut(s)	439
Eam1104I	CTCTTC	2 cut(s)	302, 2637
Eam1105I	GACNNNNNGTC	1 cut(s)	1526
EarI	CTCTTC	2 cut(s)	302, 2637
EciI	GGCGGA	1 cut(s)	1554
Ecl136II	GAGCTC	1 cut(s)	536
Eco130I	CCWWGG	4 cut(s)	704, 1454, 1709, 1820
Eco24I	GRGCYC	2 cut(s)	538, 1694
Eco31I	GGTCTC	2 cut(s)	534, 1671
Eco47I	GGWCC	5 cut(s)	367, 924, 1520, 1992, 2864
Eco53kI	GAGCTC	1 cut(s)	536
Eco57I	CTGAAG	3 cut(s)	305, 1032, 2673
Eco88I	CYCGRG	1 cut(s)	537
EcoICRI	GAGCTC	1 cut(s)	536
EcoNI	CCTNNNNNAGG	1 cut(s)	1458
EcoO109I	RGGNCCY	3 cut(s)	1451, 1520, 1691
EcoRII	CCWGG	2 cut(s)	1953, 2557
EcoT14I	CCWWGG	4 cut(s)	704, 1454, 1709, 1820
EcoT22I	ATGCAT	2 cut(s)	1707, 2211
EcoT38I	GRGCYC	2 cut(s)	538, 1694
ErhI	CCWWGG	4 cut(s)	704, 1454, 1709, 1820
FalI	AAGNNNNNCTT	6 cut(s)	1075, 1107, 1165, 1197, 2739, 2771
FauI	CCCGC	1 cut(s)	1279
Fnu4HI	GCNGC	6 cut(s)	442, 613, 814, 1547, 2226, 2444
FriOI	GRGCYC	2 cut(s)	538, 1694
Fsp4HI	GCNGC	6 cut(s)	442, 613, 814, 1547, 2226, 2444
FspBI	CTAG	9 cut(s)	44, 84, 705, 1407, 1661, 1989, 2447, 2625, 2705
GlaI	GCGC	2 cut(s)	335, 1655
GluI	GCNGC	6 cut(s)	442, 613, 814, 1547, 2226, 2444
GsaI	CCCAGC	1 cut(s)	1920
GsuI	CTGGAG	5 cut(s)	639, 975, 1371, 1746, 2466
HaeIII	GGCC	4 cut(s)	441, 1453, 1477, 1692
HapII	CCGG	1 cut(s)	784
HgaI	GACGC	1 cut(s)	1453
HhaI	GCGC	2 cut(s)	336, 1656
Hin1I	GRCGYC	1 cut(s)	1464
Hin6I	GCGC	2 cut(s)	334, 1654
HinP1I	GCGC	2 cut(s)	334, 1654
HincII	GTYRAC	1 cut(s)	763
HindII	GTYRAC	1 cut(s)	763
HindIII	AAGCTT	3 cut(s)	317, 789, 2105
HpaI	GTTAAC	1 cut(s)	763
HpaII	CCGG	1 cut(s)	784
HphI	GGTGA	5 cut(s)	38, 341, 752, 1056, 1473
Hpy166II	GTNNAC	9 cut(s)	416, 422, 763, 1402, 1412, 1793, 1995, 2797, 2975
Hpy8I	GTNNAC	9 cut(s)	416, 422, 763, 1402, 1412, 1793, 1995, 2797, 2975
Hpy99I	CGWCG	1 cut(s)	1394
HpyCH4IV	ACGT	2 cut(s)	418, 1414
HpyF10VI	GCNNNNNNNGC	6 cut(s)	105, 2126, 2231, 2471, 2852, 2903
HpySE526I	ACGT	2 cut(s)	418, 1414
Hsp92I	GRCGYC	1 cut(s)	1464
HspAI	GCGC	2 cut(s)	334, 1654
KpnI	GGTACC	1 cut(s)	406
KspAI	GTTAAC	1 cut(s)	763
LguI	GCTCTTC	1 cut(s)	2637
LmnI	GCTCC	8 cut(s)	343, 1027, 1333, 1567, 1727, 2440, 2485, 2542
Lsp1109I	GCAGC	5 cut(s)	624, 825, 1533, 2212, 2455
MaeI	CTAG	9 cut(s)	44, 84, 705, 1407, 1661, 1989, 2447, 2625, 2705
MaeII	ACGT	2 cut(s)	418, 1414
MaeIII	GTNAC	8 cut(s)	371, 503, 594, 1646, 2040, 2515, 2561, 2733
MbiI	CCGCTC	2 cut(s)	228, 400
MfeI	CAATTG	1 cut(s)	2064
MflI	RGATCY	8 cut(s)	311, 650, 773, 1085, 1804, 1957, 2197, 2314
MhlI	GDGCHC	4 cut(s)	538, 1414, 1694, 1795
MluCI	AATT	9 cut(s)	844, 1309, 1339, 1438, 1623, 2064, 2655, 2815, 2940
MlyI	GAGTC	5 cut(s)	368, 761, 1234, 2027, 2936
MmeI	TCCRAC	4 cut(s)	735, 1148, 2583, 2930
Mph1103I	ATGCAT	2 cut(s)	1707, 2211
MroXI	GAANNNNTTC	1 cut(s)	829
MseI	TTAA	8 cut(s)	245, 272, 762, 1599, 2219, 2285, 2538, 2945
MslI	CAYNNNNRTG	8 cut(s)	351, 387, 411, 525, 603, 1575, 1798, 1836
MspA1I	CMGCKG	2 cut(s)	1274, 1982
MspI	CCGG	1 cut(s)	784
MspR9I	CCNGG	3 cut(s)	784, 1955, 2559
MunI	CAATTG	1 cut(s)	2064
Mva1269I	GAATGC	1 cut(s)	2512
MvaI	CCWGG	2 cut(s)	1955, 2559
MvnI	CGCG	2 cut(s)	444, 456
MwoI	GCNNNNNNNGC	6 cut(s)	105, 2126, 2231, 2471, 2852, 2903
NciI	CCSGG	1 cut(s)	784
NcoI	CCATGG	2 cut(s)	1709, 1820
NmeAIII	GCCGAG	1 cut(s)	2857
NmuCI	GTSAC	6 cut(s)	371, 503, 594, 1646, 2040, 2561
NruI	TCGCGA	1 cut(s)	456
NsiI	ATGCAT	2 cut(s)	1707, 2211
NspI	RCATGY	1 cut(s)	1705
PaeR7I	CTCGAG	1 cut(s)	537
PagI	TCATGA	2 cut(s)	520, 1942
PciSI	GCTCTTC	1 cut(s)	2637
PctI	GAATGC	1 cut(s)	2512
PdmI	GAANNNNTTC	1 cut(s)	829
PflFI	GACNNNGTC	2 cut(s)	1224, 1990
PflMI	CCANNNNNTGG	2 cut(s)	1574, 1715
PkrI	GCNGC	6 cut(s)	443, 614, 815, 1548, 2227, 2445
PleI	GAGTC	5 cut(s)	368, 760, 1233, 2026, 2935
PpsI	GAGTC	5 cut(s)	368, 760, 1233, 2026, 2935
PpuMI	RGGWCCY	1 cut(s)	1520
PshBI	ATTAAT	1 cut(s)	1599
Psp124BI	GAGCTC	1 cut(s)	538
Psp5II	RGGWCCY	1 cut(s)	1520
Psp6I	CCWGG	2 cut(s)	1953, 2557
PspFI	CCCAGC	1 cut(s)	1916
PspGI	CCWGG	2 cut(s)	1953, 2557
PspOMI	GGGCCC	1 cut(s)	1690
PspPI	GGNCC	8 cut(s)	367, 924, 1451, 1520, 1690, 1691, 1992, 2864
PspPPI	RGGWCCY	1 cut(s)	1520
PstNI	CAGNNNCTG	1 cut(s)	2155
PsuI	RGATCY	8 cut(s)	311, 650, 773, 1085, 1804, 1957, 2197, 2314
PsyI	GACNNNGTC	2 cut(s)	1224, 1990
PvuII	CAGCTG	1 cut(s)	1982
RruI	TCGCGA	1 cut(s)	456
RsaI	GTAC	7 cut(s)	404, 869, 980, 1723, 1830, 2144, 2974
RsaNI	GTAC	7 cut(s)	403, 868, 979, 1722, 1829, 2143, 2973
RseI	CAYNNNNRTG	8 cut(s)	351, 387, 411, 525, 603, 1575, 1798, 1836
SacI	GAGCTC	1 cut(s)	538
SapI	GCTCTTC	1 cut(s)	2637
SaqAI	TTAA	8 cut(s)	245, 272, 762, 1599, 2219, 2285, 2538, 2945
SatI	GCNGC	6 cut(s)	442, 613, 814, 1547, 2226, 2444
Sau96I	GGNCC	8 cut(s)	367, 924, 1451, 1520, 1690, 1691, 1992, 2864
ScaI	AGTACT	1 cut(s)	1723
SchI	GAGTC	5 cut(s)	368, 761, 1234, 2027, 2936
ScrFI	CCNGG	3 cut(s)	784, 1955, 2559
SduI	GDGCHC	4 cut(s)	538, 1414, 1694, 1795
SfcI	CTRYAG	1 cut(s)	1998
Sfr274I	CTCGAG	1 cut(s)	537
SinI	GGWCC	5 cut(s)	367, 924, 1520, 1992, 2864
SlaI	CTCGAG	1 cut(s)	537
SmiMI	CAYNNNNRTG	8 cut(s)	351, 387, 411, 525, 603, 1575, 1798, 1836
SmlI	CTYRAG	1 cut(s)	537
SmoI	CTYRAG	1 cut(s)	537
Sse9I	AATT	9 cut(s)	844, 1309, 1339, 1438, 1623, 2064, 2655, 2815, 2940
SsiI	CCGC	5 cut(s)	226, 400, 442, 1272, 1565
SspMI	CTAG	9 cut(s)	44, 84, 705, 1407, 1661, 1989, 2447, 2625, 2705
SstI	GAGCTC	1 cut(s)	538
StyD4I	CCNGG	3 cut(s)	782, 1953, 2557
StyI	CCWWGG	4 cut(s)	704, 1454, 1709, 1820
TaiI	ACGT	2 cut(s)	421, 1417
TaqI	TCGA	3 cut(s)	538, 562, 2453
TaqII	GACCGA	2 cut(s)	522, 1237
TasI	AATT	9 cut(s)	844, 1309, 1339, 1438, 1623, 2064, 2655, 2815, 2940
TatI	WGTACW	6 cut(s)	867, 978, 1721, 1828, 2142, 2972
TauI	GCSGC	1 cut(s)	444
Tru1I	TTAA	8 cut(s)	245, 272, 762, 1599, 2219, 2285, 2538, 2945
Tru9I	TTAA	8 cut(s)	245, 272, 762, 1599, 2219, 2285, 2538, 2945
TscAI	CASTG	6 cut(s)	1183, 1386, 1816, 1893, 2156, 2490
TseFI	GTSAC	6 cut(s)	371, 503, 594, 1646, 2040, 2561
TseI	GCWGC	5 cut(s)	612, 813, 1546, 2225, 2443
Tsp45I	GTSAC	6 cut(s)	371, 503, 594, 1646, 2040, 2561
TspRI	CASTG	6 cut(s)	1183, 1386, 1816, 1893, 2156, 2490
Tth111I	GACNNNGTC	2 cut(s)	1224, 1990
Van91I	CCANNNNNTGG	2 cut(s)	1574, 1715
VneI	GTGCAC	2 cut(s)	1410, 1791
VpaK11BI	GGWCC	5 cut(s)	367, 924, 1520, 1992, 2864
VspI	ATTAAT	1 cut(s)	1599
XagI	CCTNNNNNAGG	1 cut(s)	1458
XapI	RAATTY	1 cut(s)	844
XbaI	TCTAGA	1 cut(s)	43
XceI	RCATGY	1 cut(s)	1705
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2605, 2776
XhoI	CTCGAG	1 cut(s)	537
XmaJI	CCTAGG	1 cut(s)	704
XmnI	GAANNNNTTC	1 cut(s)	829
XspI	CTAG	9 cut(s)	44, 84, 705, 1407, 1661, 1989, 2447, 2625, 2705
ZrmI	AGTACT	1 cut(s)	1723
Zsp2I	ATGCAT	2 cut(s)	1707, 2211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.