AT5G59050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010345
Physical Location & Seq
Reverse (-)
23839108 .. 23842958
3851 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G59050.1

Sequence Viewer

Length: 939 bp
ATGGAATCTACTGAACTACACGACATAGATTTCATTTCAAATCCTTTTACCTCCTTTTCTGAACCAACTTTCTTCACTCCAACCACAAGCTCTCTCCGACCCGACTTCGTATCCGACGAACCGGATTCACCAAAGGCAAAAAACGAAGACGAAGAAGACGAGTACATCACCGAGTTGACTCGCCAGATGACTAACTATATGCTTCAAGACGATGAAAAGCATCAAAAGTCTTGTGGTAGTGGCTCTGGCTCGCCGCAATCGACTCTCTGGTCACCATTTGCTTCAGGATTAAGCAGTCCAATAGGCCCTTCCCGTGAACCATCGCCGCCACTAACTCCGGCAACGGTACCGGTGGAGAAAATCATGACAAAGATTGATACAAAACCAGTAACGATCCCTTTTCAATCAAAACAAGCTCTAATCGATGACCAGATCCGATCCATTCAAGCAAACTTCCAGAAGATTAAAAAGGAGAAAGAGAAAGAGAGGCAACGCAACGCTGACGTTTTGGGGCACAAAGCAAGAAACTACCACCACCTCCACCAGAACCAGAGACCTAGGTCAGGCGTTAAGGCGGTGTTTGTTGACGGGTCGGGTTCAAGAACCGGGTCGGGTGGTACCGGAGTGTTCTTACCGCGTGGTCATGGTACCGTTGTGGAGTCACGCAAGAAATCAGGATGTTCAACAGTAATAATACCAGCAAGAGTAGTTGAAGCCTTGAAAGTTCACTTTGACAAATTGGGTGTTCCTTCTACATTCTCTTCTGATATCCCTCCTTTTCATGATGCATTGTTGGTGTCCATGAACAACAAAAAGATCAAAAGTAACAAAAATACTTCATTATCTCGGGTACAAAGTGGATCACCGTACGAAATGGAGATGTCGGCAGAGAGCCACCAAGAACCACCGGCGGATTTGCCACAGGAATGGACGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

312

Amino Acids

34.59

Weight (kDa)

6.38

Isoelectric Point (pI)

56.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010345)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59050 AT5G59050 AT5G59050 AT5G59050
fragaria_vesca FvH4_3g37230 FvH4_3g37230
malus_domestica MD03G1082700.v1.1 MD11G1090800.v1.1
prunus_persica Prupe.6G067000_v2.0.a1
pyrus_communis pycom03g06580 pycom11g07550
rosa_chinensis RchiOBHm_Chr5g0066981
rosa_laevigata RLG00000035898
rosa_multiflora Rmu_sc0008378.1_g000002
rosa_roxburghii Rroxscaffold_1G00014150
rosa_rugosa Rorug05G0380300
rosa_samantha Rh5AG439900 Rh5BG457000 Rh5CG479100 Rh5DG471700
rosa_wichuraiana Rw5G041140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 268
Acc65I GGTACC 3 cut(s) 346, 617, 647
AccB1I GGYRCC 3 cut(s) 346, 617, 647
AccII CGCG 1 cut(s) 637
AciI CCGC 5 cut(s) 254, 326, 575, 635, 911
AclWI GGATC 4 cut(s) 388, 427, 432, 868
AcuI CTGAAG 1 cut(s) 267
AfaI GTAC 7 cut(s) 164, 348, 619, 649, 852, 869, 935
AfiI CCNNNNNNNGG 1 cut(s) 563
AgeI ACCGGT 1 cut(s) 349
AgsI TTSAA 8 cut(s) 39, 206, 404, 446, 600, 684, 713, 721
AjuI GAANNNNNNNTTGG 2 cut(s) 292, 324
AluBI AGCT 2 cut(s) 90, 416
AluI AGCT 2 cut(s) 90, 416
Alw26I GTCTC 1 cut(s) 547
AlwI GGATC 4 cut(s) 388, 427, 432, 868
Ama87I CYCGRG 1 cut(s) 846
AoxI GGCC 1 cut(s) 304
AsiGI ACCGGT 1 cut(s) 349
Asp718I GGTACC 3 cut(s) 346, 617, 647
AspA2I CCTAGG 1 cut(s) 557
AspS9I GGNCC 1 cut(s) 305
AsuC2I CCSGG 1 cut(s) 607
AsuHPI GGTGA 4 cut(s) 120, 160, 264, 855
AvaI CYCGRG 1 cut(s) 846
AvrII CCTAGG 1 cut(s) 557
BaeGI GKGCMC 1 cut(s) 516
BaeI ACNNNNGTAYC 4 cut(s) 609, 639, 642, 672
BanI GGYRCC 3 cut(s) 346, 617, 647
BbsI GAAGAC 2 cut(s) 153, 162
BccI CCATC 1 cut(s) 328
BciVI GTATCC 1 cut(s) 121
BcnI CCSGG 1 cut(s) 607
BcoDI GTCTC 1 cut(s) 547
BfaI CTAG 1 cut(s) 558
BfuI GTATCC 1 cut(s) 121
BisI GCNGC 2 cut(s) 254, 326
BlnI CCTAGG 1 cut(s) 557
BlsI GCNGC 2 cut(s) 255, 327
Bme1390I CCNGG 1 cut(s) 607
BmeT110I CYCGRG 1 cut(s) 846
BmgT120I GGNCC 1 cut(s) 305
BmiI GGNNCC 3 cut(s) 348, 619, 649
BmrFI CCNGG 1 cut(s) 607
BmsI GCATC 2 cut(s) 229, 775
BoxI GACNNNNGTC 1 cut(s) 559
BpiI GAAGAC 2 cut(s) 153, 162
BpuMI CCSGG 1 cut(s) 607
Bsa29I ATCGAT 1 cut(s) 423
BsaI GGTCTC 1 cut(s) 547
BsaJI CCNNGG 1 cut(s) 557
BsaWI WCCGGW 3 cut(s) 121, 349, 620
Bsc4I CCNNNNNNNGG 1 cut(s) 563
Bse118I RCCGGY 2 cut(s) 349, 907
Bse1I ACTGG 1 cut(s) 386
BseCI ATCGAT 1 cut(s) 423
BseDI CCNNGG 1 cut(s) 557
BseGI GGATG 1 cut(s) 683
BseLI CCNNNNNNNGG 1 cut(s) 563
BseNI ACTGG 1 cut(s) 386
BseSI GKGCMC 1 cut(s) 516
Bsh1236I CGCG 1 cut(s) 637
BshFI GGCC 1 cut(s) 306
BshNI GGYRCC 3 cut(s) 346, 617, 647
BshTI ACCGGT 1 cut(s) 349
BshVI ATCGAT 1 cut(s) 423
BsiHKCI CYCGRG 1 cut(s) 846
BsiSI CCGG 6 cut(s) 122, 338, 350, 606, 621, 908
BsiWI CGTACG 1 cut(s) 867
BslI CCNNNNNNNGG 1 cut(s) 563
BsmAI GTCTC 1 cut(s) 547
BsnI GGCC 1 cut(s) 306
Bso31I GGTCTC 1 cut(s) 547
BsoBI CYCGRG 1 cut(s) 846
Bsp1286I GDGCHC 1 cut(s) 516
Bsp143I GATC 5 cut(s) 393, 432, 437, 816, 860
BspACI CCGC 5 cut(s) 254, 326, 575, 635, 911
BspANI GGCC 1 cut(s) 306
BspDI ATCGAT 1 cut(s) 423
BspFNI CGCG 1 cut(s) 637
BspHI TCATGA 2 cut(s) 363, 781
BspLI GGNNCC 3 cut(s) 348, 619, 649
BspPI GGATC 4 cut(s) 388, 427, 432, 868
BspT107I GGYRCC 3 cut(s) 346, 617, 647
BspTNI GGTCTC 1 cut(s) 547
BsrFI RCCGGY 2 cut(s) 349, 907
BsrI ACTGG 1 cut(s) 386
BssAI RCCGGY 2 cut(s) 349, 907
BssECI CCNNGG 1 cut(s) 557
BssMI GATC 5 cut(s) 393, 432, 437, 816, 860
BssT1I CCWWGG 1 cut(s) 557
Bst4CI ACNGT 4 cut(s) 346, 652, 688, 867
Bst6I CTCTTC 1 cut(s) 766
BstC8I GCNNGC 1 cut(s) 251
BstEII GGTNACC 1 cut(s) 270
BstENI CCTNNNNNAGG 1 cut(s) 561
BstF5I GGATG 1 cut(s) 683
BstFNI CGCG 1 cut(s) 637
BstKTI GATC 5 cut(s) 396, 435, 440, 819, 863
BstMAI GTCTC 1 cut(s) 547
BstMBI GATC 5 cut(s) 393, 432, 437, 816, 860
BstPAI GACNNNNGTC 1 cut(s) 559
BstPI GGTNACC 1 cut(s) 270
BstSCI CCNGG 1 cut(s) 605
BstSLI GKGCMC 1 cut(s) 516
BstUI CGCG 1 cut(s) 637
BstV2I GAAGAC 2 cut(s) 153, 162
BstX2I RGATCY 1 cut(s) 432
BstXI CCANNNNNNTGG 1 cut(s) 927
BstYI RGATCY 1 cut(s) 432
Bsu15I ATCGAT 1 cut(s) 423
BsuI GTATCC 1 cut(s) 121
BsuRI GGCC 1 cut(s) 306
BsuTUI ATCGAT 1 cut(s) 423
BtgZI GCGATG 1 cut(s) 306
BtsCI GGATG 1 cut(s) 683
Cac8I GCNNGC 1 cut(s) 251
CciI TCATGA 2 cut(s) 363, 781
Cfr10I RCCGGY 2 cut(s) 349, 907
Cfr13I GGNCC 1 cut(s) 305
ClaI ATCGAT 1 cut(s) 423
Csp6I GTAC 7 cut(s) 163, 347, 618, 648, 851, 868, 934
CspAI ACCGGT 1 cut(s) 349
CviAII CATG 4 cut(s) 364, 644, 782, 802
CviJI RGCY 7 cut(s) 90, 243, 249, 306, 416, 716, 894
CviKI_1 RGCY 7 cut(s) 90, 243, 249, 306, 416, 716, 894
CviQI GTAC 7 cut(s) 163, 347, 618, 648, 851, 868, 934
DpnI GATC 5 cut(s) 395, 434, 439, 818, 862
DpnII GATC 5 cut(s) 393, 432, 437, 816, 860
DrdI GACNNNNNNGTC 1 cut(s) 268
DseDI GACNNNNNNGTC 1 cut(s) 268
Eam1104I CTCTTC 1 cut(s) 766
EarI CTCTTC 1 cut(s) 766
EciI GGCGGA 1 cut(s) 926
Eco130I CCWWGG 1 cut(s) 557
Eco31I GGTCTC 1 cut(s) 547
Eco32I GATATC 1 cut(s) 769
Eco57I CTGAAG 1 cut(s) 267
Eco88I CYCGRG 1 cut(s) 846
Eco91I GGTNACC 1 cut(s) 270
EcoNI CCTNNNNNAGG 1 cut(s) 561
EcoO109I RGGNCCY 1 cut(s) 305
EcoO65I GGTNACC 1 cut(s) 270
EcoRV GATATC 1 cut(s) 769
EcoT14I CCWWGG 1 cut(s) 557
EcoT22I ATGCAT 1 cut(s) 790
ErhI CCWWGG 1 cut(s) 557
FaeI CATG 4 cut(s) 367, 647, 785, 805
FaiI YATR 7 cut(s) 26, 198, 200, 365, 645, 783, 803
FatI CATG 4 cut(s) 363, 643, 781, 801
Fnu4HI GCNGC 2 cut(s) 254, 326
FokI GGATG 1 cut(s) 690
Fsp4HI GCNGC 2 cut(s) 254, 326
FspBI CTAG 1 cut(s) 558
GluI GCNGC 2 cut(s) 254, 326
HaeIII GGCC 1 cut(s) 306
HapII CCGG 6 cut(s) 122, 338, 350, 606, 621, 908
Hin1II CATG 4 cut(s) 367, 647, 785, 805
HincII GTYRAC 2 cut(s) 177, 586
HindII GTYRAC 2 cut(s) 177, 586
HinfI GANTC 5 cut(s) 5, 125, 178, 262, 659
HpaII CCGG 6 cut(s) 122, 338, 350, 606, 621, 908
HphI GGTGA 4 cut(s) 120, 160, 264, 855
Hpy166II GTNNAC 4 cut(s) 177, 317, 586, 727
Hpy188I TCNGA 5 cut(s) 61, 98, 115, 437, 766
Hpy188III TCNNGA 7 cut(s) 206, 285, 364, 457, 600, 675, 782
Hpy8I GTNNAC 4 cut(s) 177, 317, 586, 727
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 2 cut(s) 318, 759
HpyCH4III ACNGT 4 cut(s) 346, 652, 688, 867
HpyCH4IV ACGT 2 cut(s) 504, 932
HpyCH4V TGCA 1 cut(s) 788
HpySE526I ACGT 2 cut(s) 504, 932
Hsp92II CATG 4 cut(s) 367, 647, 785, 805
KpnI GGTACC 3 cut(s) 350, 621, 651
Kzo9I GATC 5 cut(s) 393, 432, 437, 816, 860
LweI GCATC 2 cut(s) 229, 775
MaeI CTAG 1 cut(s) 558
MaeII ACGT 2 cut(s) 504, 932
MaeIII GTNAC 4 cut(s) 270, 388, 660, 824
MalI GATC 5 cut(s) 395, 434, 439, 818, 862
MboI GATC 5 cut(s) 393, 432, 437, 816, 860
MboII GAAGA 6 cut(s) 64, 158, 164, 167, 472, 753
MflI RGATCY 1 cut(s) 432
MhlI GDGCHC 1 cut(s) 516
MluCI AATT 1 cut(s) 737
MlyI GAGTC 3 cut(s) 172, 256, 668
MmeI TCCRAC 3 cut(s) 104, 121, 138
MnlI CCTC 4 cut(s) 61, 480, 548, 783
Mph1103I ATGCAT 1 cut(s) 790
MseI TTAA 3 cut(s) 290, 465, 570
MslI CAYNNNNRTG 1 cut(s) 925
MspI CCGG 6 cut(s) 122, 338, 350, 606, 621, 908
MspR9I CCNGG 1 cut(s) 607
MvnI CGCG 1 cut(s) 637
NciI CCSGG 1 cut(s) 607
NdeII GATC 5 cut(s) 393, 432, 437, 816, 860
NlaIII CATG 4 cut(s) 367, 647, 785, 805
NlaIV GGNNCC 3 cut(s) 348, 619, 649
NmuCI GTSAC 2 cut(s) 270, 660
NsiI ATGCAT 1 cut(s) 790
PagI TCATGA 2 cut(s) 363, 781
PcsI WCGNNNNNNNCGW 3 cut(s) 114, 156, 257
PfeI GAWTC 2 cut(s) 5, 125
Pfl23II CGTACG 1 cut(s) 867
PinAI ACCGGT 1 cut(s) 349
PkrI GCNGC 2 cut(s) 255, 327
PleI GAGTC 3 cut(s) 172, 256, 667
PpsI GAGTC 3 cut(s) 172, 256, 667
PshAI GACNNNNGTC 1 cut(s) 559
PspEI GGTNACC 1 cut(s) 270
PspLI CGTACG 1 cut(s) 867
PspN4I GGNNCC 3 cut(s) 348, 619, 649
PspPI GGNCC 1 cut(s) 305
PsuI RGATCY 1 cut(s) 432
RsaI GTAC 7 cut(s) 164, 348, 619, 649, 852, 869, 935
RsaNI GTAC 7 cut(s) 163, 347, 618, 648, 851, 868, 934
RseI CAYNNNNRTG 1 cut(s) 925
SaqAI TTAA 3 cut(s) 290, 465, 570
SatI GCNGC 2 cut(s) 254, 326
Sau3AI GATC 5 cut(s) 393, 432, 437, 816, 860
Sau96I GGNCC 1 cut(s) 305
SchI GAGTC 3 cut(s) 172, 256, 668
ScrFI CCNGG 1 cut(s) 607
SduI GDGCHC 1 cut(s) 516
SetI ASST 8 cut(s) 53, 92, 418, 507, 540, 559, 563, 935
SfaNI GCATC 2 cut(s) 229, 775
SgrAI CRCCGGYG 1 cut(s) 907
SmiMI CAYNNNNRTG 1 cut(s) 925
Sse9I AATT 1 cut(s) 737
SsiI CCGC 5 cut(s) 254, 326, 575, 635, 911
SspMI CTAG 1 cut(s) 558
StyD4I CCNGG 1 cut(s) 605
StyI CCWWGG 1 cut(s) 557
TaaI ACNGT 4 cut(s) 346, 652, 688, 867
TaiI ACGT 2 cut(s) 507, 935
TaqI TCGA 2 cut(s) 260, 423
TasI AATT 1 cut(s) 737
TatI WGTACW 1 cut(s) 162
TauI GCSGC 2 cut(s) 256, 328
TfiI GAWTC 2 cut(s) 5, 125
Tru1I TTAA 3 cut(s) 290, 465, 570
Tru9I TTAA 3 cut(s) 290, 465, 570
TseFI GTSAC 2 cut(s) 270, 660
Tsp45I GTSAC 2 cut(s) 270, 660
TspDTI ATGAA 5 cut(s) 22, 228, 770, 818, 828
XagI CCTNNNNNAGG 1 cut(s) 561
XmaJI CCTAGG 1 cut(s) 557
XspI CTAG 1 cut(s) 558
Zsp2I ATGCAT 1 cut(s) 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.