Rmu_sc0008378.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008378.1
OG0010345
Physical Location & Seq
Reverse (-)
6596 .. 9289
2694 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008378.1_g000002.1.cds

Sequence Viewer

Length: 1182 bp
atgatggatgttgttgacttccaacgcgggagagagttactgttcgatcatcatcattttctcaacgagcaggaaactccgtcgtcggagatgaagttttccggtggctccgattacaagcaccggtggggttttcctgaaggtgaggggaaagggtttgttgggtcgaggactactgaagctgagcttgtttcgtcgtccgagtcgactgtagaagacgatgattacattgctgagttgactcgccagatgactcactacatgcttcaagacgacgacaaacacgctctgaaaaccagtactactagctccgagaaaaacgaagagtcgtggggttgtgtcggttggccaagtgactctacgatgatgtggtcgcctttgggatcgagcagtggaagcccagaaggtccatctcaggagccgtcgccgccggtgaccccaggcaaataccaagcttcggaacataaaagtctgtcgtacgccgccgttttgtgcaagttggacaagttagatatgaacaaacagggacgcccaagtggaagtaccccagtagctgaagctgaaaatccaaagcaatgtgtagcttttgatcaaagccaagactctaagattaattttacgcaaaagcaatggcaaagctcaaagaagcaaggctcaataaataatggtagacaaccgaaggatattgctcatcaaaaattgaagtcctacgaccaaaaccagaagaaaggagggtcttctgctaatggcggattaaggcatcctccagctattgccaatttacattcaaacccgtggctgaacaaccagcaaggcccctcaaatatgagggcagttttccttggtggatcgggttccggttccagagttgggacgccgtcttgtgggactggtgtcttcttgccctgtgttattggtaacacatcccaatcacccaagaataaaagaggatgtgcccctgttcttatacccgcaaaggtagtacaagccctgaaggttcactttgaccgagtcggtgaccaacctcgaccaaaccctacttcttttcccatattaaacgattcctcaaagggtggaaggaggacaagcacgtatgcaaatagaaagcgccactcgcgaggtgcggcaacgccggacatgaacaataatgagatgcgtctacctcaagaatggacttattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

393

Amino Acids

43.12

Weight (kDa)

8.6

Isoelectric Point (pI)

54.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010345)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59050 AT5G59050 AT5G59050 AT5G59050
fragaria_vesca FvH4_3g37230 FvH4_3g37230
malus_domestica MD03G1082700.v1.1 MD11G1090800.v1.1
prunus_persica Prupe.6G067000_v2.0.a1
pyrus_communis pycom03g06580 pycom11g07550
rosa_chinensis RchiOBHm_Chr5g0066981
rosa_laevigata RLG00000035898
rosa_multiflora Rmu_sc0008378.1_g000002
rosa_roxburghii Rroxscaffold_1G00014150
rosa_rugosa Rorug05G0380300
rosa_samantha Rh5AG439900 Rh5BG457000 Rh5CG479100 Rh5DG471700
rosa_wichuraiana Rw5G041140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 206, 670, 1159
AccII CGCG 2 cut(s) 27, 1117
AciI CCGC 6 cut(s) 27, 428, 483, 750, 972, 1124
AclWI GGATC 2 cut(s) 391, 856
AcoI YGGCCR 1 cut(s) 347
AcuI CTGAAG 4 cut(s) 159, 198, 576, 1013
AcyI GRCGYC 2 cut(s) 529, 875
AfaI GTAC 4 cut(s) 301, 479, 544, 984
AfiI CCNNNNNNNGG 3 cut(s) 457, 870, 884
AgeI ACCGGT 1 cut(s) 123
AgsI TTSAA 3 cut(s) 269, 703, 789
AjnI CCWGG 1 cut(s) 439
AjuI GAANNNNNNNTTGG 2 cut(s) 1024, 1056
AluBI AGCT 9 cut(s) 182, 187, 309, 455, 554, 560, 584, 639, 770
AluI AGCT 9 cut(s) 182, 187, 309, 455, 554, 560, 584, 639, 770
AlwI GGATC 2 cut(s) 391, 856
AlwNI CAGNNNCTG 1 cut(s) 554
AoxI GGCC 2 cut(s) 347, 814
AseI ATTAAT 1 cut(s) 612
AsiGI ACCGGT 1 cut(s) 123
AspLEI GCGC 1 cut(s) 1110
AspS9I GGNCC 2 cut(s) 407, 815
AsuHPI GGTGA 4 cut(s) 155, 445, 924, 1028
AvaII GGWCC 1 cut(s) 407
BaeGI GKGCMC 1 cut(s) 958
BalI TGGCCA 1 cut(s) 349
BbsI GAAGAC 3 cut(s) 222, 729, 889
BccI CCATC 1 cut(s) 418
BceAI ACGGC 3 cut(s) 406, 470, 862
BciT130I CCWGG 1 cut(s) 441
BclI TGATCA 1 cut(s) 589
BfaI CTAG 1 cut(s) 306
BfmI CTRYAG 1 cut(s) 210
BfoI RGCGCY 1 cut(s) 1111
BisI GCNGC 3 cut(s) 428, 483, 1125
BlpI GCTNAGC 1 cut(s) 183
BlsI GCNGC 3 cut(s) 429, 484, 1126
BmcAI AGTACT 1 cut(s) 301
Bme1390I CCNGG 1 cut(s) 441
Bme18I GGWCC 1 cut(s) 407
BmgT120I GGNCC 2 cut(s) 407, 815
BmiI GGNNCC 5 cut(s) 109, 420, 817, 856, 862
BmrFI CCNGG 1 cut(s) 441
BmrI ACTGGG 1 cut(s) 542
BmsI GCATC 2 cut(s) 769, 1143
BmuI ACTGGG 1 cut(s) 542
BoxI GACNNNNGTC 1 cut(s) 893
BpiI GAAGAC 3 cut(s) 222, 729, 889
BpmI CTGGAG 1 cut(s) 750
Bpu1102I GCTNAGC 1 cut(s) 183
BpuEI CTTGAG 1 cut(s) 1149
BsaAI YACGTR 1 cut(s) 1092
BsaBI GATNNNNATC 1 cut(s) 51
BsaHI GRCGYC 2 cut(s) 529, 875
BsaJI CCNNGG 3 cut(s) 439, 794, 841
BsaWI WCCGGW 3 cut(s) 101, 123, 857
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 3 cut(s) 457, 870, 884
Bse118I RCCGGY 2 cut(s) 123, 430
Bse1I ACTGG 3 cut(s) 297, 548, 895
Bse3DI GCAATG 3 cut(s) 228, 581, 635
Bse8I GATNNNNATC 1 cut(s) 51
BseBI CCWGG 1 cut(s) 441
BseDI CCNNGG 3 cut(s) 439, 794, 841
BseGI GGATG 4 cut(s) 13, 760, 923, 956
BseJI GATNNNNATC 1 cut(s) 51
BseLI CCNNNNNNNGG 3 cut(s) 457, 870, 884
BseMI GCAATG 3 cut(s) 228, 581, 635
BseMII CTCAG 3 cut(s) 174, 225, 428
BseNI ACTGG 3 cut(s) 297, 548, 895
BseSI GKGCMC 1 cut(s) 958
Bsh1236I CGCG 2 cut(s) 27, 1117
BshFI GGCC 2 cut(s) 349, 816
BshTI ACCGGT 1 cut(s) 123
BsiSI CCGG 5 cut(s) 102, 124, 431, 858, 1133
BsiWI CGTACG 1 cut(s) 477
BslFI GGGAC 3 cut(s) 540, 886, 901
BslI CCNNNNNNNGG 3 cut(s) 457, 870, 884
BsmFI GGGAC 3 cut(s) 540, 886, 901
BsnI GGCC 2 cut(s) 349, 816
Bsp1286I GDGCHC 1 cut(s) 958
Bsp143I GATC 4 cut(s) 46, 383, 589, 848
Bsp1720I GCTNAGC 1 cut(s) 183
Bsp68I TCGCGA 1 cut(s) 1117
BspACI CCGC 6 cut(s) 27, 428, 483, 750, 972, 1124
BspANI GGCC 2 cut(s) 349, 816
BspCNI CTCAG 3 cut(s) 175, 226, 427
BspFNI CGCG 2 cut(s) 27, 1117
BspLI GGNNCC 5 cut(s) 109, 420, 817, 856, 862
BspPI GGATC 2 cut(s) 391, 856
BsrDI GCAATG 3 cut(s) 228, 581, 635
BsrFI RCCGGY 2 cut(s) 123, 430
BsrI ACTGG 3 cut(s) 297, 548, 895
BssAI RCCGGY 2 cut(s) 123, 430
BssECI CCNNGG 3 cut(s) 439, 794, 841
BssMI GATC 4 cut(s) 46, 383, 589, 848
BssNI GRCGYC 2 cut(s) 529, 875
BssT1I CCWWGG 1 cut(s) 841
Bst2UI CCWGG 1 cut(s) 441
Bst4CI ACNGT 2 cut(s) 42, 211
Bst6I CTCTTC 1 cut(s) 318
BstACI GRCGYC 2 cut(s) 529, 875
BstBAI YACGTR 1 cut(s) 1092
BstDEI CTNAG 4 cut(s) 183, 234, 414, 606
BstDSI CCRYGG 1 cut(s) 794
BstEII GGTNACC 2 cut(s) 433, 1016
BstF5I GGATG 4 cut(s) 13, 760, 923, 956
BstFNI CGCG 2 cut(s) 27, 1117
BstH2I RGCGCY 1 cut(s) 1111
BstHHI GCGC 1 cut(s) 1110
BstKTI GATC 4 cut(s) 49, 386, 592, 851
BstMBI GATC 4 cut(s) 46, 383, 589, 848
BstMWI GCNNNNNNNGC 3 cut(s) 396, 427, 1114
BstNI CCWGG 1 cut(s) 441
BstNSI RCATGY 1 cut(s) 265
BstPAI GACNNNNGTC 1 cut(s) 893
BstPI GGTNACC 2 cut(s) 433, 1016
BstSCI CCNGG 1 cut(s) 439
BstSFI CTRYAG 1 cut(s) 210
BstSLI GKGCMC 1 cut(s) 958
BstUI CGCG 2 cut(s) 27, 1117
BstV2I GAAGAC 3 cut(s) 222, 729, 889
BsuRI GGCC 2 cut(s) 349, 816
BtgI CCRYGG 1 cut(s) 794
BtsCI GGATG 4 cut(s) 13, 760, 923, 956
BtsI GCAGTG 1 cut(s) 397
BtsIMutI CAGTG 1 cut(s) 397
BtuMI TCGCGA 1 cut(s) 1117
CaiI CAGNNNCTG 1 cut(s) 554
CfoI GCGC 1 cut(s) 1110
Cfr10I RCCGGY 2 cut(s) 123, 430
Cfr13I GGNCC 2 cut(s) 407, 815
CseI GACGC 3 cut(s) 537, 883, 1145
Csp6I GTAC 4 cut(s) 300, 478, 543, 983
CspAI ACCGGT 1 cut(s) 123
CviAII CATG 2 cut(s) 262, 1138
CviQI GTAC 4 cut(s) 300, 478, 543, 983
DdeI CTNAG 4 cut(s) 183, 234, 414, 606
DpnI GATC 4 cut(s) 48, 385, 591, 850
DpnII GATC 4 cut(s) 46, 383, 589, 848
EaeI YGGCCR 1 cut(s) 347
Eam1104I CTCTTC 1 cut(s) 318
EarI CTCTTC 1 cut(s) 318
EciI GGCGGA 1 cut(s) 765
Eco130I CCWWGG 1 cut(s) 841
Eco47I GGWCC 1 cut(s) 407
Eco57I CTGAAG 4 cut(s) 159, 198, 576, 1013
Eco91I GGTNACC 2 cut(s) 433, 1016
EcoO109I RGGNCCY 1 cut(s) 815
EcoO65I GGTNACC 2 cut(s) 433, 1016
EcoRII CCWGG 1 cut(s) 439
EcoT14I CCWWGG 1 cut(s) 841
ErhI CCWWGG 1 cut(s) 841
FaeI CATG 2 cut(s) 265, 1141
FaiI YATR 8 cut(s) 263, 465, 515, 827, 968, 1052, 1095, 1139
FalI AAGNNNNNCTT 4 cut(s) 171, 203, 986, 1018
FaqI GGGAC 3 cut(s) 540, 886, 901
FatI CATG 2 cut(s) 261, 1137
FauI CCCGC 2 cut(s) 20, 979
FbaI TGATCA 1 cut(s) 589
FblI GTMKAC 3 cut(s) 206, 670, 1159
Fnu4HI GCNGC 3 cut(s) 428, 483, 1125
FokI GGATG 4 cut(s) 20, 747, 910, 963
Fsp4HI GCNGC 3 cut(s) 428, 483, 1125
FspBI CTAG 1 cut(s) 306
GlaI GCGC 1 cut(s) 1109
GluI GCNGC 3 cut(s) 428, 483, 1125
GsuI CTGGAG 1 cut(s) 750
HaeII RGCGCY 1 cut(s) 1111
HaeIII GGCC 2 cut(s) 349, 816
HapII CCGG 5 cut(s) 102, 124, 431, 858, 1133
HgaI GACGC 3 cut(s) 537, 883, 1145
HhaI GCGC 1 cut(s) 1110
Hin1I GRCGYC 2 cut(s) 529, 875
Hin1II CATG 2 cut(s) 265, 1141
Hin6I GCGC 1 cut(s) 1108
HinP1I GCGC 1 cut(s) 1108
HincII GTYRAC 3 cut(s) 16, 207, 240
HindII GTYRAC 3 cut(s) 16, 207, 240
HindIII AAGCTT 1 cut(s) 453
HinfI GANTC 8 cut(s) 203, 241, 253, 326, 356, 602, 1011, 1061
HpaII CCGG 5 cut(s) 102, 124, 431, 858, 1133
HphI GGTGA 4 cut(s) 155, 445, 924, 1028
Hpy166II GTNNAC 6 cut(s) 16, 207, 240, 671, 1000, 1160
Hpy188I TCNGA 6 cut(s) 88, 112, 202, 291, 313, 460
Hpy188III TCNNGA 6 cut(s) 137, 269, 416, 864, 1116, 1166
Hpy8I GTNNAC 6 cut(s) 16, 207, 240, 671, 1000, 1160
Hpy99I CGWCG 5 cut(s) 85, 88, 199, 278, 427
HpyAV CCTTC 5 cut(s) 134, 398, 673, 988, 1071
HpyCH4III ACNGT 2 cut(s) 42, 211
HpyCH4IV ACGT 1 cut(s) 1091
HpyCH4V TGCA 2 cut(s) 495, 1097
HpyF10VI GCNNNNNNNGC 3 cut(s) 396, 427, 1114
HpyF3I CTNAG 4 cut(s) 183, 234, 414, 606
HpySE526I ACGT 1 cut(s) 1091
Hsp92I GRCGYC 2 cut(s) 529, 875
Hsp92II CATG 2 cut(s) 265, 1141
HspAI GCGC 1 cut(s) 1108
Ksp22I TGATCA 1 cut(s) 589
Kzo9I GATC 4 cut(s) 46, 383, 589, 848
LmnI GCTCC 3 cut(s) 113, 314, 418
LweI GCATC 2 cut(s) 769, 1143
MaeI CTAG 1 cut(s) 306
MaeII ACGT 1 cut(s) 1091
MaeIII GTNAC 5 cut(s) 36, 353, 433, 917, 1016
MalI GATC 4 cut(s) 48, 385, 591, 850
MboI GATC 4 cut(s) 46, 383, 589, 848
MboII GAAGA 5 cut(s) 227, 335, 729, 736, 889
MhlI GDGCHC 1 cut(s) 958
MlsI TGGCCA 1 cut(s) 349
MluCI AATT 3 cut(s) 613, 698, 778
MluNI TGGCCA 1 cut(s) 349
MlyI GAGTC 7 cut(s) 212, 235, 247, 335, 350, 596, 1020
MmeI TCCRAC 3 cut(s) 46, 66, 480
Mox20I TGGCCA 1 cut(s) 349
MscI TGGCCA 1 cut(s) 349
MseI TTAA 3 cut(s) 612, 755, 1055
Msp20I TGGCCA 1 cut(s) 349
MspI CCGG 5 cut(s) 102, 124, 431, 858, 1133
MspR9I CCNGG 1 cut(s) 441
MvaI CCWGG 1 cut(s) 441
MvnI CGCG 2 cut(s) 27, 1117
MwoI GCNNNNNNNGC 3 cut(s) 396, 427, 1114
NdeII GATC 4 cut(s) 46, 383, 589, 848
NlaIII CATG 2 cut(s) 265, 1141
NlaIV GGNNCC 5 cut(s) 109, 420, 817, 856, 862
NmuCI GTSAC 3 cut(s) 353, 433, 1016
NruI TCGCGA 1 cut(s) 1117
NspI RCATGY 1 cut(s) 265
PcsI WCGNNNNNNNCGW 1 cut(s) 203
PfeI GAWTC 1 cut(s) 1061
Pfl23II CGTACG 1 cut(s) 477
PflFI GACNNNGTC 2 cut(s) 877, 1010
PinAI ACCGGT 1 cut(s) 123
PkrI GCNGC 3 cut(s) 429, 484, 1126
PleI GAGTC 7 cut(s) 211, 235, 247, 334, 350, 596, 1019
PpsI GAGTC 7 cut(s) 211, 235, 247, 334, 350, 596, 1019
Ppu21I YACGTR 1 cut(s) 1092
PshAI GACNNNNGTC 1 cut(s) 893
PshBI ATTAAT 1 cut(s) 612
Psp6I CCWGG 1 cut(s) 439
PspEI GGTNACC 2 cut(s) 433, 1016
PspGI CCWGG 1 cut(s) 439
PspLI CGTACG 1 cut(s) 477
PspN4I GGNNCC 5 cut(s) 109, 420, 817, 856, 862
PspPI GGNCC 2 cut(s) 407, 815
PstNI CAGNNNCTG 1 cut(s) 554
PsyI GACNNNGTC 2 cut(s) 877, 1010
RruI TCGCGA 1 cut(s) 1117
RsaI GTAC 4 cut(s) 301, 479, 544, 984
RsaNI GTAC 4 cut(s) 300, 478, 543, 983
SalI GTCGAC 1 cut(s) 205
SaqAI TTAA 3 cut(s) 612, 755, 1055
SatI GCNGC 3 cut(s) 428, 483, 1125
Sau3AI GATC 4 cut(s) 46, 383, 589, 848
Sau96I GGNCC 2 cut(s) 407, 815
ScaI AGTACT 1 cut(s) 301
SchI GAGTC 7 cut(s) 212, 235, 247, 335, 350, 596, 1020
ScrFI CCNGG 1 cut(s) 441
SduI GDGCHC 1 cut(s) 958
SfaNI GCATC 2 cut(s) 769, 1143
SfcI CTRYAG 1 cut(s) 210
SgrAI CRCCGGYG 2 cut(s) 123, 430
SinI GGWCC 1 cut(s) 407
SmlI CTYRAG 1 cut(s) 1164
SmoI CTYRAG 1 cut(s) 1164
Sse9I AATT 3 cut(s) 613, 698, 778
SsiI CCGC 6 cut(s) 27, 428, 483, 750, 972, 1124
SspMI CTAG 1 cut(s) 306
StyD4I CCNGG 1 cut(s) 439
StyI CCWWGG 1 cut(s) 841
TaaI ACNGT 2 cut(s) 42, 211
TaiI ACGT 1 cut(s) 1094
TaqI TCGA 5 cut(s) 45, 167, 206, 386, 1027
TaqII GACCGA 1 cut(s) 1023
TasI AATT 3 cut(s) 613, 698, 778
TatI WGTACW 2 cut(s) 299, 982
TauI GCSGC 3 cut(s) 430, 485, 1127
TfiI GAWTC 1 cut(s) 1061
Tru1I TTAA 3 cut(s) 612, 755, 1055
Tru9I TTAA 3 cut(s) 612, 755, 1055
TscAI CASTG 1 cut(s) 397
TseFI GTSAC 3 cut(s) 353, 433, 1016
Tsp45I GTSAC 3 cut(s) 353, 433, 1016
TspDTI ATGAA 3 cut(s) 107, 530, 1154
TspGWI ACGGA 1 cut(s) 69
TspRI CASTG 1 cut(s) 397
Tth111I GACNNNGTC 2 cut(s) 877, 1010
VpaK11BI GGWCC 1 cut(s) 407
VspI ATTAAT 1 cut(s) 612
XceI RCATGY 1 cut(s) 265
XmiI GTMKAC 3 cut(s) 206, 670, 1159
XspI CTAG 1 cut(s) 306
ZrmI AGTACT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.