Prupe.6G067000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0010345
Physical Location & Seq
Reverse (-)
4633474 .. 4636575
3102 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G067000.1

Sequence Viewer

Length: 1122 bp
ATGGTGGATTTTGAGTGCTCCTCCTCCAAACCCAACTACAAGGACTGGGATTTTAAAGCTGCTGCCAAAGGGTTCATTGGGTCATCAGATTTTAGCTCTTCTTCTTCGTCTTCTGTGCTTGAGGATGAACTCGTTTCCTCCGAGTCAGCTGATACCACTGATGAGGAAGACGATTACATTGCTGAGTTGACTCGCCAGATGACTCACTACATGCTTCAAGATGACCATGACAAAGCCAATATTAGCTCTCAGAAAAACCAAGAGTTATTGGGTTCTGTTGGTTGGCCACAGTACTCAACACTGTGGTCACCGCTGGGTTCGAGCTATGGTAGCCCAGAAGGATCATCTCTGGAACCAACGCCACCAGCAACACCAGTCAAAAACCACGCTTGGAATAGCTGCACGTACGCTGACGTTTTGAAAAAGTTGGACAAATTAGATATAACCAACCAAGGGTTAAATTCTCCTCAGGGAGCAAGCACGTGTACCAAAGTAGCTGAGAACTCAGGTGTTAGATCTTGCTCAAAGCAAGGTCTAACTTTTGATCAAAGCCAAGATTTTCAGAAACTTGAGGCCTATCATAGGGTAAAGCAAGAGAAAATTTCAAGCAAACAAGGGTCAAGTAGTAGAGGAAGGCAAGCCAATATTGGTAATCAACAATTTGAGCCTACTAACTATAAGCACCAGCACAAAGGAGGAGCTTGTGGAAGGTCAAGGTCTCCTACACAATTTGGACTGCCTGCAGCTTCAAACCCATGGATGAGCCAGCAGGCAAGTCCGGGTATGAGGGCCGTTTTCCTTGGGGGGTCTGGTTCGAAAACCAGGTCGTCTTGTGGGACAGGTGTCTTTTTGCCTTGTGTTATTGGTAACGCGTCACAATCACCCAAGAAAAAAGGATGTTCCCCTGTTCTTATACCCGCTAAGGTAGTGCAAGCCTTGAAAGTTCACTTCGACCGAGTTGGTGAGCTACCCCGACCCAACGCTACCGGCTTCTCTATACAAAATGATGGTTTTAACAAGGGTGATAGGGCAAGCATGCAATCAACTAAAAAACGTCACTCACGGGCTGTGCCAGAGATGAACCATAATGAGATGGGTCTGCCTCAAGAATGGACATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

374

Amino Acids

40.6

Weight (kDa)

8.31

Isoelectric Point (pI)

65.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010345)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59050 AT5G59050 AT5G59050 AT5G59050
fragaria_vesca FvH4_3g37230 FvH4_3g37230
malus_domestica MD03G1082700.v1.1 MD11G1090800.v1.1
prunus_persica Prupe.6G067000_v2.0.a1
pyrus_communis pycom03g06580 pycom11g07550
rosa_chinensis RchiOBHm_Chr5g0066981
rosa_laevigata RLG00000035898
rosa_multiflora Rmu_sc0008378.1_g000002
rosa_roxburghii Rroxscaffold_1G00014150
rosa_rugosa Rorug05G0380300
rosa_samantha Rh5AG439900 Rh5BG457000 Rh5CG479100 Rh5DG471700
rosa_wichuraiana Rw5G041140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 872
AciI CCGC 2 cut(s) 311, 918
AclWI GGATC 1 cut(s) 349
AcoI YGGCCR 1 cut(s) 284
AcsI RAATTY 2 cut(s) 460, 600
AcvI CACGTG 1 cut(s) 483
AfaI GTAC 3 cut(s) 293, 407, 487
AfiI CCNNNNNNNGG 2 cut(s) 453, 582
AflIII ACRYGT 2 cut(s) 482, 870
AgsI TTSAA 5 cut(s) 218, 421, 606, 750, 940
AjnI CCWGG 1 cut(s) 821
Alw21I GWGCWC 1 cut(s) 20
Alw26I GTCTC 1 cut(s) 723
AlwI GGATC 1 cut(s) 349
AoxI GGCC 3 cut(s) 284, 573, 789
ApeKI GCWGC 4 cut(s) 59, 62, 399, 743
ApoI RAATTY 2 cut(s) 460, 600
ArsI GACNNNNNNTTYG 2 cut(s) 809, 841
AspS9I GGNCC 1 cut(s) 789
AsuC2I CCSGG 1 cut(s) 780
AsuHPI GGTGA 4 cut(s) 300, 873, 974, 1034
AsuII TTCGAA 1 cut(s) 815
AxyI CCTNAGG 1 cut(s) 468
BalI TGGCCA 1 cut(s) 286
BbrPI CACGTG 1 cut(s) 483
BbsI GAAGAC 2 cut(s) 102, 174
Bbv12I GWGCWC 1 cut(s) 20
BbvI GCAGC 4 cut(s) 46, 49, 386, 755
BccI CCATC 2 cut(s) 1001, 1087
BceAI ACGGC 1 cut(s) 776
BcgI CGANNNNNNTGC 2 cut(s) 161, 195
BciT130I CCWGG 1 cut(s) 823
BclI TGATCA 1 cut(s) 544
BcnI CCSGG 1 cut(s) 780
BcoDI GTCTC 1 cut(s) 723
BfmI CTRYAG 1 cut(s) 741
BglII AGATCT 1 cut(s) 515
BisI GCNGC 4 cut(s) 60, 63, 400, 744
BlsI GCNGC 4 cut(s) 61, 64, 401, 745
BmcAI AGTACT 1 cut(s) 293
Bme1390I CCNGG 2 cut(s) 780, 823
BmgT120I GGNCC 1 cut(s) 789
BmiI GGNNCC 1 cut(s) 354
BmrFI CCNGG 2 cut(s) 780, 823
BmrI ACTGGG 1 cut(s) 55
BmuI ACTGGG 1 cut(s) 55
BoxI GACNNNNGTC 1 cut(s) 842
BpiI GAAGAC 2 cut(s) 102, 174
BplI GAGNNNNNCTC 1 cut(s) 37
Bpu10I CCTNAGC 1 cut(s) 921
Bpu14I TTCGAA 1 cut(s) 815
BpuEI CTTGAG 3 cut(s) 140, 590, 1089
BpuMI CCSGG 1 cut(s) 780
BsaAI YACGTR 2 cut(s) 405, 483
BsaI GGTCTC 1 cut(s) 723
BsaJI CCNNGG 3 cut(s) 451, 755, 799
Bsc4I CCNNNNNNNGG 2 cut(s) 453, 582
Bse118I RCCGGY 1 cut(s) 986
Bse1I ACTGG 2 cut(s) 50, 374
Bse21I CCTNAGG 1 cut(s) 468
Bse3DI GCAATG 1 cut(s) 177
BseBI CCWGG 1 cut(s) 823
BseDI CCNNGG 3 cut(s) 451, 755, 799
BseGI GGATG 3 cut(s) 130, 765, 902
BseLI CCNNNNNNNGG 2 cut(s) 453, 582
BseMI GCAATG 1 cut(s) 177
BseMII CTCAG 5 cut(s) 174, 263, 482, 489, 519
BseNI ACTGG 2 cut(s) 50, 374
BseRI GAGGAG 4 cut(s) 10, 13, 456, 711
BseXI GCAGC 4 cut(s) 46, 49, 386, 755
BseYI CCCAGC 1 cut(s) 313
BsgI GTGCAG 1 cut(s) 385
Bsh1236I CGCG 1 cut(s) 872
Bsh1285I CGRYCG 1 cut(s) 955
BshFI GGCC 3 cut(s) 286, 575, 791
BsiEI CGRYCG 1 cut(s) 955
BsiHKAI GWGCWC 1 cut(s) 20
BsiSI CCGG 2 cut(s) 779, 987
BsiWI CGTACG 1 cut(s) 405
BslFI GGGAC 1 cut(s) 850
BslI CCNNNNNNNGG 2 cut(s) 453, 582
BsmAI GTCTC 1 cut(s) 723
BsmFI GGGAC 1 cut(s) 850
BsnI GGCC 3 cut(s) 286, 575, 791
Bso31I GGTCTC 1 cut(s) 723
Bsp119I TTCGAA 1 cut(s) 815
Bsp1286I GDGCHC 1 cut(s) 20
Bsp143I GATC 3 cut(s) 341, 515, 544
Bsp19I CCATGG 1 cut(s) 755
BspACI CCGC 2 cut(s) 311, 918
BspANI GGCC 3 cut(s) 286, 575, 791
BspCNI CTCAG 5 cut(s) 175, 262, 481, 490, 518
BspFNI CGCG 1 cut(s) 872
BspLI GGNNCC 1 cut(s) 354
BspMAI CTGCAG 1 cut(s) 745
BspPI GGATC 1 cut(s) 349
BspQI GCTCTTC 1 cut(s) 103
BspT104I TTCGAA 1 cut(s) 815
BspTNI GGTCTC 1 cut(s) 723
BsrDI GCAATG 1 cut(s) 177
BsrFI RCCGGY 1 cut(s) 986
BsrI ACTGG 2 cut(s) 50, 374
BssAI RCCGGY 1 cut(s) 986
BssECI CCNNGG 3 cut(s) 451, 755, 799
BssMI GATC 3 cut(s) 341, 515, 544
BssT1I CCWWGG 3 cut(s) 451, 755, 799
Bst2UI CCWGG 1 cut(s) 823
Bst4CI ACNGT 2 cut(s) 291, 303
Bst6I CTCTTC 1 cut(s) 103
BstBAI YACGTR 2 cut(s) 405, 483
BstBI TTCGAA 1 cut(s) 815
BstC8I GCNNGC 8 cut(s) 478, 639, 741, 767, 771, 933, 1033, 1037
BstDEI CTNAG 6 cut(s) 183, 249, 468, 498, 505, 921
BstDSI CCRYGG 1 cut(s) 755
BstEII GGTNACC 1 cut(s) 306
BstENI CCTNNNNNAGG 1 cut(s) 580
BstF5I GGATG 3 cut(s) 130, 765, 902
BstFNI CGCG 1 cut(s) 872
BstKTI GATC 3 cut(s) 344, 518, 547
BstMAI GTCTC 1 cut(s) 723
BstMBI GATC 3 cut(s) 341, 515, 544
BstMCI CGRYCG 1 cut(s) 955
BstMWI GCNNNNNNNGC 1 cut(s) 330
BstNI CCWGG 1 cut(s) 823
BstNSI RCATGY 2 cut(s) 214, 1039
BstPAI GACNNNNGTC 1 cut(s) 842
BstPI GGTNACC 1 cut(s) 306
BstSCI CCNGG 2 cut(s) 778, 821
BstSFI CTRYAG 1 cut(s) 741
BstUI CGCG 1 cut(s) 872
BstV1I GCAGC 4 cut(s) 46, 49, 386, 755
BstV2I GAAGAC 2 cut(s) 102, 174
BstX2I RGATCY 1 cut(s) 515
BstYI RGATCY 1 cut(s) 515
Bsu36I CCTNAGG 1 cut(s) 468
BsuRI GGCC 3 cut(s) 286, 575, 791
BtgI CCRYGG 1 cut(s) 755
BtsCI GGATG 3 cut(s) 130, 765, 902
BtsIMutI CAGTG 2 cut(s) 156, 299
Cac8I GCNNGC 8 cut(s) 478, 639, 741, 767, 771, 933, 1033, 1037
Cfr10I RCCGGY 1 cut(s) 986
Cfr13I GGNCC 1 cut(s) 789
CseI GACGC 1 cut(s) 861
CsiI ACCWGGT 1 cut(s) 821
Csp6I GTAC 3 cut(s) 292, 406, 486
CviAII CATG 4 cut(s) 211, 227, 756, 1036
CviQI GTAC 3 cut(s) 292, 406, 486
DdeI CTNAG 6 cut(s) 183, 249, 468, 498, 505, 921
DpnI GATC 3 cut(s) 343, 517, 546
DpnII GATC 3 cut(s) 341, 515, 544
DraI TTTAAA 1 cut(s) 55
EaeI YGGCCR 1 cut(s) 284
Eam1104I CTCTTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 103
Eco130I CCWWGG 3 cut(s) 451, 755, 799
Eco147I AGGCCT 1 cut(s) 575
Eco31I GGTCTC 1 cut(s) 723
Eco72I CACGTG 1 cut(s) 483
Eco81I CCTNAGG 1 cut(s) 468
Eco91I GGTNACC 1 cut(s) 306
EcoNI CCTNNNNNAGG 1 cut(s) 580
EcoO65I GGTNACC 1 cut(s) 306
EcoRII CCWGG 1 cut(s) 821
EcoT14I CCWWGG 3 cut(s) 451, 755, 799
ErhI CCWWGG 3 cut(s) 451, 755, 799
FaeI CATG 4 cut(s) 214, 230, 759, 1039
FaqI GGGAC 1 cut(s) 850
FatI CATG 4 cut(s) 210, 226, 755, 1035
FauI CCCGC 1 cut(s) 925
FbaI TGATCA 1 cut(s) 544
Fnu4HI GCNGC 4 cut(s) 60, 63, 400, 744
FokI GGATG 3 cut(s) 137, 772, 909
Fsp4HI GCNGC 4 cut(s) 60, 63, 400, 744
GluI GCNGC 4 cut(s) 60, 63, 400, 744
GsaI CCCAGC 1 cut(s) 317
HaeIII GGCC 3 cut(s) 286, 575, 791
HapII CCGG 2 cut(s) 779, 987
HgaI GACGC 1 cut(s) 861
Hin1II CATG 4 cut(s) 214, 230, 759, 1039
HincII GTYRAC 1 cut(s) 189
HindII GTYRAC 1 cut(s) 189
HinfI GANTC 3 cut(s) 143, 190, 202
HpaII CCGG 2 cut(s) 779, 987
HphI GGTGA 4 cut(s) 300, 873, 974, 1034
Hpy166II GTNNAC 3 cut(s) 189, 486, 946
Hpy188I TCNGA 4 cut(s) 88, 142, 252, 564
Hpy188III TCNNGA 3 cut(s) 218, 350, 1106
Hpy8I GTNNAC 3 cut(s) 189, 486, 946
HpyAV CCTTC 3 cut(s) 332, 627, 702
HpyCH4III ACNGT 2 cut(s) 291, 303
HpyCH4IV ACGT 4 cut(s) 404, 414, 482, 1054
HpyCH4V TGCA 4 cut(s) 402, 743, 931, 1039
HpyF10VI GCNNNNNNNGC 1 cut(s) 330
HpyF3I CTNAG 6 cut(s) 183, 249, 468, 498, 505, 921
HpySE526I ACGT 4 cut(s) 404, 414, 482, 1054
Hsp92II CATG 4 cut(s) 214, 230, 759, 1039
Ksp22I TGATCA 1 cut(s) 544
Kzo9I GATC 3 cut(s) 341, 515, 544
LguI GCTCTTC 1 cut(s) 103
LmnI GCTCC 3 cut(s) 23, 473, 698
Lsp1109I GCAGC 4 cut(s) 46, 49, 386, 755
MabI ACCWGGT 1 cut(s) 821
MaeII ACGT 4 cut(s) 404, 414, 482, 1054
MaeIII GTNAC 4 cut(s) 306, 866, 873, 1055
MalI GATC 3 cut(s) 343, 517, 546
MboI GATC 3 cut(s) 341, 515, 544
MboII GAAGA 5 cut(s) 90, 93, 96, 102, 179
MflI RGATCY 1 cut(s) 515
MhlI GDGCHC 1 cut(s) 20
MlsI TGGCCA 1 cut(s) 286
MluCI AATT 5 cut(s) 434, 460, 600, 659, 728
MluI ACGCGT 1 cut(s) 870
MluNI TGGCCA 1 cut(s) 286
MlyI GAGTC 3 cut(s) 152, 184, 196
MmeI TCCRAC 1 cut(s) 408
Mox20I TGGCCA 1 cut(s) 286
MscI TGGCCA 1 cut(s) 286
MseI TTAA 3 cut(s) 54, 458, 1014
Msp20I TGGCCA 1 cut(s) 286
MspA1I CMGCKG 2 cut(s) 149, 313
MspI CCGG 2 cut(s) 779, 987
MspR9I CCNGG 2 cut(s) 780, 823
MvaI CCWGG 1 cut(s) 823
MvnI CGCG 1 cut(s) 872
MwoI GCNNNNNNNGC 1 cut(s) 330
NciI CCSGG 1 cut(s) 780
NcoI CCATGG 1 cut(s) 755
NdeII GATC 3 cut(s) 341, 515, 544
NlaIII CATG 4 cut(s) 214, 230, 759, 1039
NlaIV GGNNCC 1 cut(s) 354
NmuCI GTSAC 3 cut(s) 306, 873, 1055
NspI RCATGY 2 cut(s) 214, 1039
NspV TTCGAA 1 cut(s) 815
PaeI GCATGC 1 cut(s) 1039
PceI AGGCCT 1 cut(s) 575
PciSI GCTCTTC 1 cut(s) 103
PcsI WCGNNNNNNNCGW 1 cut(s) 138
Pfl23II CGTACG 1 cut(s) 405
PkrI GCNGC 4 cut(s) 61, 64, 401, 745
PleI GAGTC 3 cut(s) 151, 184, 196
PmaCI CACGTG 1 cut(s) 483
PmlI CACGTG 1 cut(s) 483
PpsI GAGTC 3 cut(s) 151, 184, 196
Ppu21I YACGTR 2 cut(s) 405, 483
PshAI GACNNNNGTC 1 cut(s) 842
Psp6I CCWGG 1 cut(s) 821
PspCI CACGTG 1 cut(s) 483
PspEI GGTNACC 1 cut(s) 306
PspFI CCCAGC 1 cut(s) 313
PspGI CCWGG 1 cut(s) 821
PspLI CGTACG 1 cut(s) 405
PspN4I GGNNCC 1 cut(s) 354
PspPI GGNCC 1 cut(s) 789
PstI CTGCAG 1 cut(s) 745
PsuI RGATCY 1 cut(s) 515
PvuII CAGCTG 1 cut(s) 149
RsaI GTAC 3 cut(s) 293, 407, 487
RsaNI GTAC 3 cut(s) 292, 406, 486
SapI GCTCTTC 1 cut(s) 103
SaqAI TTAA 3 cut(s) 54, 458, 1014
SatI GCNGC 4 cut(s) 60, 63, 400, 744
Sau3AI GATC 3 cut(s) 341, 515, 544
Sau96I GGNCC 1 cut(s) 789
ScaI AGTACT 1 cut(s) 293
SchI GAGTC 3 cut(s) 152, 184, 196
ScrFI CCNGG 2 cut(s) 780, 823
SduI GDGCHC 1 cut(s) 20
SexAI ACCWGGT 1 cut(s) 821
SfcI CTRYAG 1 cut(s) 741
SfuI TTCGAA 1 cut(s) 815
SmlI CTYRAG 3 cut(s) 119, 569, 1104
SmoI CTYRAG 3 cut(s) 119, 569, 1104
SphI GCATGC 1 cut(s) 1039
Sse9I AATT 5 cut(s) 434, 460, 600, 659, 728
SseBI AGGCCT 1 cut(s) 575
SsiI CCGC 2 cut(s) 311, 918
SspI AATATT 2 cut(s) 241, 646
StuI AGGCCT 1 cut(s) 575
StyD4I CCNGG 2 cut(s) 778, 821
StyI CCWWGG 3 cut(s) 451, 755, 799
TaaI ACNGT 2 cut(s) 291, 303
TaiI ACGT 4 cut(s) 407, 417, 485, 1057
TaqI TCGA 3 cut(s) 320, 815, 951
TaqII GACCGA 1 cut(s) 969
TasI AATT 5 cut(s) 434, 460, 600, 659, 728
TatI WGTACW 1 cut(s) 291
Tru1I TTAA 3 cut(s) 54, 458, 1014
Tru9I TTAA 3 cut(s) 54, 458, 1014
TscAI CASTG 2 cut(s) 163, 306
TseFI GTSAC 3 cut(s) 306, 873, 1055
TseI GCWGC 4 cut(s) 59, 62, 399, 743
Tsp45I GTSAC 3 cut(s) 306, 873, 1055
TspDTI ATGAA 3 cut(s) 64, 141, 1094
TspRI CASTG 2 cut(s) 163, 306
XagI CCTNNNNNAGG 1 cut(s) 580
XapI RAATTY 2 cut(s) 460, 600
XceI RCATGY 2 cut(s) 214, 1039
ZrmI AGTACT 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.