RLG00000035898

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0010345
Physical Location & Seq
Forward (+)
73172545 .. 73176022
3478 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035898

Sequence Viewer

Length: 1179 bp
ATGGATGTTGTTGACTTCCAACGCGGGAGAGAGTTACTGTTCGATCATCATCATTTTCTCAACGAGCAGGAAACTCCGTCGTCGGAGGTGAAGTTTTCCGGTGGCTCCGATTACAAGCACGGGTGGGGTTTTCCTGAAGGTGAGGGGAAAGGGTTTGTTGGGTCGAGGACTACTGAAGCTGAGCTTGTTTCGTCGTCCGAGTCGACTGTAGAAGACGACGATTACATTGCTGAGTTGACTCGCCAGATGACTCACTACATGCTTCAAGACGACGACAAACACGCTCTGAAAACCAGTACTACTAGCTCCGAGAAAAACGAGGTGTCGTGGGGTTGTGTCGGTTGGCCAAGTGATTCTACGACGATGTGGTCGCCGTTGGGATCGAGCAGTGGAAGCCCAGAAGGTCCATCTCAGGAGCCGTCGCCGCCGGTGACCCCAGGAAAATACCAAGCTTCGGAACATAAAAGTCCGTCGTACGCCGCCGTTTTGTGCAAGTTGGACAAGTTAGATATGAACAAACAGGGAAGCCCAAGTGGAAGTACCCCAGTAGCTGAAGCTGAAAATCCAAAGCAATGTGTAGCTTTTGATCAAAGCCAAGACTCTAAGATTAATTTCACGCAAAAGCAAGGGCAAAGCTCAAAGAAGCAAGGCTCAATAAGTAATGGTAGACAACCGAAGAATATTGCTCATCAAAAATTTAAGTCCTACGACCAAAACCAGAAGAAAGGAGGGTCTTCTGCTAATGGCGGATTAAGGCATCCTCCACCTATTGCCAATTTGCACTCAAACCCGTGGCTGAACAACCAGCAAGGCCCCTCAAATATGAGGGCAGTTTTCCTTGGCGGGTCGGGTTCCGGTTCCAGAGTTGGGACGCCGTCTTGTGGGACTGGTGTCTTCTTGCCCTGTGTTATTGGTAACACATCCCAATCACCCAAGAATAAAAGAGGATGTGCCCCTGTTCTTATACCCGCAAAGGTAGTACAAGCCCTGAAGGTTCACTTTGACCGAGTCGGTGACCAACCTCGACCAAACCCTACTTCTTTTCCCATGTTAAACGATTCCTCAAAGGCTGGAAGGACGACAAGCACGTCTGCAAATAGAAAGCGCCACTCGAGAGGTGCGGCAACGCCGGACATGAACAATAATGAGATGGGTCTACCTCAAGAATGGACTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

393

Amino Acids

42.41

Weight (kDa)

8.13

Isoelectric Point (pI)

52.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010345)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59050 AT5G59050 AT5G59050 AT5G59050
fragaria_vesca FvH4_3g37230 FvH4_3g37230
malus_domestica MD03G1082700.v1.1 MD11G1090800.v1.1
prunus_persica Prupe.6G067000_v2.0.a1
pyrus_communis pycom03g06580 pycom11g07550
rosa_chinensis RchiOBHm_Chr5g0066981
rosa_laevigata RLG00000035898
rosa_multiflora Rmu_sc0008378.1_g000002
rosa_roxburghii Rroxscaffold_1G00014150
rosa_rugosa Rorug05G0380300
rosa_samantha Rh5AG439900 Rh5BG457000 Rh5CG479100 Rh5DG471700
rosa_wichuraiana Rw5G041140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 367, 1087
AccI GTMKAC 3 cut(s) 203, 667, 1156
AccII CGCG 1 cut(s) 24
AciI CCGC 7 cut(s) 24, 425, 480, 747, 843, 969, 1121
AclWI GGATC 1 cut(s) 388
AcoI YGGCCR 1 cut(s) 344
AcsI RAATTY 1 cut(s) 695
AcuI CTGAAG 4 cut(s) 156, 195, 573, 1010
AcyI GRCGYC 1 cut(s) 872
AfaI GTAC 4 cut(s) 298, 476, 541, 981
AfiI CCNNNNNNNGG 3 cut(s) 454, 867, 881
AgsI TTSAA 1 cut(s) 266
AjiI CACGTC 1 cut(s) 1089
AjnI CCWGG 1 cut(s) 436
AjuI GAANNNNNNNTTGG 2 cut(s) 1021, 1053
AluBI AGCT 8 cut(s) 179, 184, 306, 452, 551, 557, 581, 636
AluI AGCT 8 cut(s) 179, 184, 306, 452, 551, 557, 581, 636
AlwI GGATC 1 cut(s) 388
AlwNI CAGNNNCTG 1 cut(s) 551
Ama87I CYCGRG 1 cut(s) 1111
AoxI GGCC 2 cut(s) 344, 811
ApoI RAATTY 1 cut(s) 695
AseI ATTAAT 1 cut(s) 609
AspLEI GCGC 1 cut(s) 1107
AspS9I GGNCC 2 cut(s) 404, 812
AsuHPI GGTGA 5 cut(s) 100, 152, 442, 921, 1025
AvaI CYCGRG 1 cut(s) 1111
AvaII GGWCC 1 cut(s) 404
BaeGI GKGCMC 1 cut(s) 955
BalI TGGCCA 1 cut(s) 346
BbsI GAAGAC 3 cut(s) 219, 726, 886
BccI CCATC 2 cut(s) 415, 1144
BceAI ACGGC 4 cut(s) 358, 403, 467, 859
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BciT130I CCWGG 1 cut(s) 438
BclI TGATCA 1 cut(s) 586
BfaI CTAG 1 cut(s) 303
BfmI CTRYAG 1 cut(s) 207
BfoI RGCGCY 1 cut(s) 1108
BisI GCNGC 3 cut(s) 425, 480, 1122
BlpI GCTNAGC 1 cut(s) 180
BlsI GCNGC 3 cut(s) 426, 481, 1123
BmcAI AGTACT 1 cut(s) 298
Bme1390I CCNGG 1 cut(s) 438
Bme18I GGWCC 1 cut(s) 404
BmeT110I CYCGRG 1 cut(s) 1111
BmgBI CACGTC 1 cut(s) 1089
BmgT120I GGNCC 2 cut(s) 404, 812
BmiI GGNNCC 5 cut(s) 106, 417, 814, 853, 859
BmrFI CCNGG 1 cut(s) 438
BmrI ACTGGG 1 cut(s) 539
BmsI GCATC 1 cut(s) 766
BmuI ACTGGG 1 cut(s) 539
BoxI GACNNNNGTC 1 cut(s) 890
BpiI GAAGAC 3 cut(s) 219, 726, 886
Bpu1102I GCTNAGC 1 cut(s) 180
BpuEI CTTGAG 1 cut(s) 1146
BsaBI GATNNNNATC 1 cut(s) 48
BsaHI GRCGYC 1 cut(s) 872
BsaJI CCNNGG 3 cut(s) 436, 791, 838
BsaWI WCCGGW 2 cut(s) 98, 854
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bsc4I CCNNNNNNNGG 3 cut(s) 454, 867, 881
Bse118I RCCGGY 1 cut(s) 427
Bse1I ACTGG 3 cut(s) 294, 545, 892
Bse3DI GCAATG 2 cut(s) 225, 578
Bse8I GATNNNNATC 1 cut(s) 48
BseBI CCWGG 1 cut(s) 438
BseDI CCNNGG 3 cut(s) 436, 791, 838
BseGI GGATG 4 cut(s) 10, 757, 920, 953
BseJI GATNNNNATC 1 cut(s) 48
BseLI CCNNNNNNNGG 3 cut(s) 454, 867, 881
BseMI GCAATG 2 cut(s) 225, 578
BseMII CTCAG 3 cut(s) 171, 222, 425
BseNI ACTGG 3 cut(s) 294, 545, 892
BseSI GKGCMC 1 cut(s) 955
Bsh1236I CGCG 1 cut(s) 24
BshFI GGCC 2 cut(s) 346, 813
BsiHKCI CYCGRG 1 cut(s) 1111
BsiSI CCGG 4 cut(s) 99, 428, 855, 1130
BsiWI CGTACG 1 cut(s) 474
BslFI GGGAC 2 cut(s) 883, 898
BslI CCNNNNNNNGG 3 cut(s) 454, 867, 881
BsmFI GGGAC 2 cut(s) 883, 898
BsnI GGCC 2 cut(s) 346, 813
BsoBI CYCGRG 1 cut(s) 1111
Bsp1286I GDGCHC 1 cut(s) 955
Bsp143I GATC 3 cut(s) 43, 380, 586
Bsp1720I GCTNAGC 1 cut(s) 180
BspACI CCGC 7 cut(s) 24, 425, 480, 747, 843, 969, 1121
BspANI GGCC 2 cut(s) 346, 813
BspCNI CTCAG 3 cut(s) 172, 223, 424
BspFNI CGCG 1 cut(s) 24
BspLI GGNNCC 5 cut(s) 106, 417, 814, 853, 859
BspPI GGATC 1 cut(s) 388
BsrDI GCAATG 2 cut(s) 225, 578
BsrFI RCCGGY 1 cut(s) 427
BsrI ACTGG 3 cut(s) 294, 545, 892
BssAI RCCGGY 1 cut(s) 427
BssECI CCNNGG 3 cut(s) 436, 791, 838
BssMI GATC 3 cut(s) 43, 380, 586
BssNI GRCGYC 1 cut(s) 872
BssT1I CCWWGG 1 cut(s) 838
Bst2UI CCWGG 1 cut(s) 438
Bst4CI ACNGT 2 cut(s) 39, 208
BstACI GRCGYC 1 cut(s) 872
BstDEI CTNAG 4 cut(s) 180, 231, 411, 603
BstDSI CCRYGG 1 cut(s) 791
BstEII GGTNACC 2 cut(s) 430, 1013
BstF5I GGATG 4 cut(s) 10, 757, 920, 953
BstFNI CGCG 1 cut(s) 24
BstH2I RGCGCY 1 cut(s) 1108
BstHHI GCGC 1 cut(s) 1107
BstKTI GATC 3 cut(s) 46, 383, 589
BstMBI GATC 3 cut(s) 43, 380, 586
BstMWI GCNNNNNNNGC 2 cut(s) 393, 424
BstNI CCWGG 1 cut(s) 438
BstNSI RCATGY 1 cut(s) 262
BstPAI GACNNNNGTC 1 cut(s) 890
BstPI GGTNACC 2 cut(s) 430, 1013
BstSCI CCNGG 1 cut(s) 436
BstSFI CTRYAG 1 cut(s) 207
BstSLI GKGCMC 1 cut(s) 955
BstUI CGCG 1 cut(s) 24
BstV2I GAAGAC 3 cut(s) 219, 726, 886
BsuRI GGCC 2 cut(s) 346, 813
BtgI CCRYGG 1 cut(s) 791
BtrI CACGTC 1 cut(s) 1089
BtsCI GGATG 4 cut(s) 10, 757, 920, 953
BtsI GCAGTG 1 cut(s) 394
BtsIMutI CAGTG 1 cut(s) 394
CaiI CAGNNNCTG 1 cut(s) 551
CfoI GCGC 1 cut(s) 1107
Cfr10I RCCGGY 1 cut(s) 427
Cfr13I GGNCC 2 cut(s) 404, 812
CseI GACGC 1 cut(s) 880
Csp6I GTAC 4 cut(s) 297, 475, 540, 980
CviAII CATG 3 cut(s) 259, 1048, 1135
CviQI GTAC 4 cut(s) 297, 475, 540, 980
DdeI CTNAG 4 cut(s) 180, 231, 411, 603
DpnI GATC 3 cut(s) 45, 382, 588
DpnII GATC 3 cut(s) 43, 380, 586
DrdI GACNNNNNNGTC 2 cut(s) 367, 1087
DseDI GACNNNNNNGTC 2 cut(s) 367, 1087
EaeI YGGCCR 1 cut(s) 344
EciI GGCGGA 1 cut(s) 762
Eco130I CCWWGG 1 cut(s) 838
Eco47I GGWCC 1 cut(s) 404
Eco57I CTGAAG 4 cut(s) 156, 195, 573, 1010
Eco88I CYCGRG 1 cut(s) 1111
Eco91I GGTNACC 2 cut(s) 430, 1013
EcoO109I RGGNCCY 1 cut(s) 812
EcoO65I GGTNACC 2 cut(s) 430, 1013
EcoRII CCWGG 1 cut(s) 436
EcoT14I CCWWGG 1 cut(s) 838
ErhI CCWWGG 1 cut(s) 838
FaeI CATG 3 cut(s) 262, 1051, 1138
FaiI YATR 7 cut(s) 260, 462, 512, 824, 965, 1049, 1136
FalI AAGNNNNNCTT 4 cut(s) 168, 200, 983, 1015
FaqI GGGAC 2 cut(s) 883, 898
FatI CATG 3 cut(s) 258, 1047, 1134
FauI CCCGC 3 cut(s) 17, 836, 976
FbaI TGATCA 1 cut(s) 586
FblI GTMKAC 3 cut(s) 203, 667, 1156
Fnu4HI GCNGC 3 cut(s) 425, 480, 1122
FokI GGATG 4 cut(s) 17, 744, 907, 960
Fsp4HI GCNGC 3 cut(s) 425, 480, 1122
FspBI CTAG 1 cut(s) 303
GlaI GCGC 1 cut(s) 1106
GluI GCNGC 3 cut(s) 425, 480, 1122
HaeII RGCGCY 1 cut(s) 1108
HaeIII GGCC 2 cut(s) 346, 813
HapII CCGG 4 cut(s) 99, 428, 855, 1130
HgaI GACGC 1 cut(s) 880
HhaI GCGC 1 cut(s) 1107
Hin1I GRCGYC 1 cut(s) 872
Hin1II CATG 3 cut(s) 262, 1051, 1138
Hin6I GCGC 1 cut(s) 1105
HinP1I GCGC 1 cut(s) 1105
HincII GTYRAC 3 cut(s) 13, 204, 237
HindII GTYRAC 3 cut(s) 13, 204, 237
HindIII AAGCTT 1 cut(s) 450
HinfI GANTC 7 cut(s) 200, 238, 250, 353, 599, 1008, 1058
HpaII CCGG 4 cut(s) 99, 428, 855, 1130
HphI GGTGA 5 cut(s) 100, 152, 442, 921, 1025
Hpy166II GTNNAC 6 cut(s) 13, 204, 237, 668, 997, 1157
Hpy188I TCNGA 6 cut(s) 85, 109, 199, 288, 310, 457
Hpy188III TCNNGA 6 cut(s) 134, 266, 413, 861, 1113, 1163
Hpy8I GTNNAC 6 cut(s) 13, 204, 237, 668, 997, 1157
Hpy99I CGWCG 8 cut(s) 82, 85, 196, 221, 275, 364, 424, 475
HpyAV CCTTC 4 cut(s) 131, 395, 985, 1068
HpyCH4III ACNGT 2 cut(s) 39, 208
HpyCH4IV ACGT 1 cut(s) 1088
HpyCH4V TGCA 3 cut(s) 492, 781, 1094
HpyF10VI GCNNNNNNNGC 2 cut(s) 393, 424
HpyF3I CTNAG 4 cut(s) 180, 231, 411, 603
HpySE526I ACGT 1 cut(s) 1088
Hsp92I GRCGYC 1 cut(s) 872
Hsp92II CATG 3 cut(s) 262, 1051, 1138
HspAI GCGC 1 cut(s) 1105
Ksp22I TGATCA 1 cut(s) 586
Kzo9I GATC 3 cut(s) 43, 380, 586
LmnI GCTCC 3 cut(s) 110, 311, 415
LweI GCATC 1 cut(s) 766
MaeI CTAG 1 cut(s) 303
MaeII ACGT 1 cut(s) 1088
MaeIII GTNAC 4 cut(s) 33, 430, 914, 1013
MalI GATC 3 cut(s) 45, 382, 588
MboI GATC 3 cut(s) 43, 380, 586
MboII GAAGA 5 cut(s) 224, 688, 726, 733, 886
MhlI GDGCHC 1 cut(s) 955
MlsI TGGCCA 1 cut(s) 346
MluCI AATT 3 cut(s) 610, 695, 775
MluNI TGGCCA 1 cut(s) 346
MlyI GAGTC 5 cut(s) 209, 232, 244, 593, 1017
MmeI TCCRAC 3 cut(s) 43, 63, 477
Mox20I TGGCCA 1 cut(s) 346
MscI TGGCCA 1 cut(s) 346
MseI TTAA 4 cut(s) 609, 699, 752, 1052
Msp20I TGGCCA 1 cut(s) 346
MspI CCGG 4 cut(s) 99, 428, 855, 1130
MspR9I CCNGG 1 cut(s) 438
MvaI CCWGG 1 cut(s) 438
MvnI CGCG 1 cut(s) 24
MwoI GCNNNNNNNGC 2 cut(s) 393, 424
NdeII GATC 3 cut(s) 43, 380, 586
NlaIII CATG 3 cut(s) 262, 1051, 1138
NlaIV GGNNCC 5 cut(s) 106, 417, 814, 853, 859
NmuCI GTSAC 2 cut(s) 430, 1013
NspI RCATGY 1 cut(s) 262
PaeR7I CTCGAG 1 cut(s) 1111
PcsI WCGNNNNNNNCGW 2 cut(s) 200, 1085
PfeI GAWTC 2 cut(s) 353, 1058
Pfl23II CGTACG 1 cut(s) 474
PflFI GACNNNGTC 2 cut(s) 874, 1007
PkrI GCNGC 3 cut(s) 426, 481, 1123
PleI GAGTC 5 cut(s) 208, 232, 244, 593, 1016
PpsI GAGTC 5 cut(s) 208, 232, 244, 593, 1016
PshAI GACNNNNGTC 1 cut(s) 890
PshBI ATTAAT 1 cut(s) 609
Psp6I CCWGG 1 cut(s) 436
PspEI GGTNACC 2 cut(s) 430, 1013
PspGI CCWGG 1 cut(s) 436
PspLI CGTACG 1 cut(s) 474
PspN4I GGNNCC 5 cut(s) 106, 417, 814, 853, 859
PspPI GGNCC 2 cut(s) 404, 812
PstNI CAGNNNCTG 1 cut(s) 551
PsyI GACNNNGTC 2 cut(s) 874, 1007
RsaI GTAC 4 cut(s) 298, 476, 541, 981
RsaNI GTAC 4 cut(s) 297, 475, 540, 980
SalI GTCGAC 1 cut(s) 202
SaqAI TTAA 4 cut(s) 609, 699, 752, 1052
SatI GCNGC 3 cut(s) 425, 480, 1122
Sau3AI GATC 3 cut(s) 43, 380, 586
Sau96I GGNCC 2 cut(s) 404, 812
ScaI AGTACT 1 cut(s) 298
SchI GAGTC 5 cut(s) 209, 232, 244, 593, 1017
ScrFI CCNGG 1 cut(s) 438
SduI GDGCHC 1 cut(s) 955
SfaNI GCATC 1 cut(s) 766
SfcI CTRYAG 1 cut(s) 207
Sfr274I CTCGAG 1 cut(s) 1111
SgrAI CRCCGGYG 1 cut(s) 427
SinI GGWCC 1 cut(s) 404
SlaI CTCGAG 1 cut(s) 1111
SmlI CTYRAG 2 cut(s) 1111, 1161
SmoI CTYRAG 2 cut(s) 1111, 1161
Sse9I AATT 3 cut(s) 610, 695, 775
SsiI CCGC 7 cut(s) 24, 425, 480, 747, 843, 969, 1121
SspI AATATT 1 cut(s) 682
SspMI CTAG 1 cut(s) 303
StyD4I CCNGG 1 cut(s) 436
StyI CCWWGG 1 cut(s) 838
TaaI ACNGT 2 cut(s) 39, 208
TaiI ACGT 1 cut(s) 1091
TaqI TCGA 6 cut(s) 42, 164, 203, 383, 1024, 1112
TaqII GACCGA 1 cut(s) 1020
TasI AATT 3 cut(s) 610, 695, 775
TatI WGTACW 2 cut(s) 296, 979
TauI GCSGC 3 cut(s) 427, 482, 1124
TfiI GAWTC 2 cut(s) 353, 1058
Tru1I TTAA 4 cut(s) 609, 699, 752, 1052
Tru9I TTAA 4 cut(s) 609, 699, 752, 1052
TscAI CASTG 1 cut(s) 394
TseFI GTSAC 2 cut(s) 430, 1013
Tsp45I GTSAC 2 cut(s) 430, 1013
TspDTI ATGAA 2 cut(s) 527, 1151
TspGWI ACGGA 2 cut(s) 66, 459
TspRI CASTG 1 cut(s) 394
Tth111I GACNNNGTC 2 cut(s) 874, 1007
VpaK11BI GGWCC 1 cut(s) 404
VspI ATTAAT 1 cut(s) 609
XapI RAATTY 1 cut(s) 695
XceI RCATGY 1 cut(s) 262
XhoI CTCGAG 1 cut(s) 1111
XmiI GTMKAC 3 cut(s) 203, 667, 1156
XspI CTAG 1 cut(s) 303
ZrmI AGTACT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.