Rh5DG471700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0010345
Physical Location & Seq
Forward (+)
74630900 .. 74634571
3672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG471700.1

Sequence Viewer

Length: 1071 bp
ATGATGGATGTTGTTGACTTCCAACACGGGAGAAAGTTACTGTTCGATCATCATCATTTTCTCAACGAGCAGGAAACTCCGTCGTCGGAGATGAAGTTTTCCGGTGGCTCCGATTACAAGCACCGGTGGGGTTTTCCTGAAGGTGAGGGGAAAGGGTTTGTTGGGTCGAGGACTACTGAAGCTGAGCTTGTTTCGTCGTCCGAGTCGACTGTAGAAGACGATGATTACATTGCTGAGTTGACTCGCCAGATGACTCACTACATGCTTCAAGACGACGACAAACACGCTCTGAAAACCAGTACTACTAGCTCCGAGAAAAACGAAGAGTCGTGGGGTTGTGTCGGTTGGCCAAGTGACTCTACGATGATGTGGTCGCCTTTGGGATCGAGCAGTGGAAGCCCAGAAGGTCCATCTCAGGAGCCGTCGCCGCCGGTGACCCCAGGCAAATACCAAGCTGCGGAACATAAAAGTCTGTCGTACGCCGCCGTTTTGTGCAAGTTGGACAAGTTAGATATGAACAAACAGGGACGCCCAAGTGGAAGTACCCCAGTAGCTGAAGCTGAAAATCCAAAGCAATGTGTAGCTTTTGATCAAAGCCAAGACTCTAAGATTAATTTTACGCAAAAGCAATGGCAAAGCTCAAAGAAGCAAGGCTCAATAAATAATGGTATTGCTCATCAAAAATTGAAGTCCTACGACCAAAACCAGAAGAAAGGAGGGTCTTCTGCTAATGGCGGATTAAGGCATCCTCCAGCTATTGCCAATTTACATTCAAACCCGTGGCTGAACAACCAGCAAGGCCCCTCAAATATGAGGGCAGTTTTCCTTGGTGGATCGGGTTCCGGTTCCAGAGTTGGGACGCCGTCTTGTGGGACCGGTGTCTTCTTGCCCTGTGTCATTGGTAACACATCCCAATCACCCAAGAATAAAAGAGGATGTGCCCCTGTTCTTATACCCGCAAAGGTAGTACAAGCCCTGAAGGTTCACTTTGACCGAGTCGGTGACCAACCTCGACCAAACCCTACTTCTTTTCCCATATTAAACGGTACAGAACTACAGATTACCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

356

Amino Acids

38.69

Weight (kDa)

6.86

Isoelectric Point (pI)

52.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010345)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59050 AT5G59050 AT5G59050 AT5G59050
fragaria_vesca FvH4_3g37230 FvH4_3g37230
malus_domestica MD03G1082700.v1.1 MD11G1090800.v1.1
prunus_persica Prupe.6G067000_v2.0.a1
pyrus_communis pycom03g06580 pycom11g07550
rosa_chinensis RchiOBHm_Chr5g0066981
rosa_laevigata RLG00000035898
rosa_multiflora Rmu_sc0008378.1_g000002
rosa_roxburghii Rroxscaffold_1G00014150
rosa_rugosa Rorug05G0380300
rosa_samantha Rh5AG439900 Rh5BG457000 Rh5CG479100 Rh5DG471700
rosa_wichuraiana Rw5G041140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 206
AciI CCGC 5 cut(s) 428, 458, 483, 735, 957
AclWI GGATC 2 cut(s) 391, 841
AcoI YGGCCR 1 cut(s) 347
AcuI CTGAAG 4 cut(s) 159, 198, 576, 998
AcyI GRCGYC 2 cut(s) 529, 860
AfaI GTAC 5 cut(s) 301, 479, 544, 969, 1048
AfiI CCNNNNNNNGG 3 cut(s) 457, 855, 869
AgeI ACCGGT 2 cut(s) 123, 875
AgsI TTSAA 3 cut(s) 269, 688, 774
AjnI CCWGG 1 cut(s) 439
AjuI GAANNNNNNNTTGG 2 cut(s) 1009, 1041
AluBI AGCT 9 cut(s) 182, 187, 309, 455, 554, 560, 584, 639, 755
AluI AGCT 9 cut(s) 182, 187, 309, 455, 554, 560, 584, 639, 755
AlwI GGATC 2 cut(s) 391, 841
AlwNI CAGNNNCTG 1 cut(s) 554
AoxI GGCC 2 cut(s) 347, 799
ApeKI GCWGC 1 cut(s) 455
AseI ATTAAT 1 cut(s) 612
AsiGI ACCGGT 2 cut(s) 123, 875
AspS9I GGNCC 3 cut(s) 407, 800, 873
AsuHPI GGTGA 4 cut(s) 155, 445, 909, 1013
AvaII GGWCC 2 cut(s) 407, 873
BaeGI GKGCMC 1 cut(s) 943
BalI TGGCCA 1 cut(s) 349
BbsI GAAGAC 3 cut(s) 222, 714, 874
BbvI GCAGC 1 cut(s) 442
BccI CCATC 1 cut(s) 418
BceAI ACGGC 3 cut(s) 406, 470, 847
BciT130I CCWGG 1 cut(s) 441
BclI TGATCA 1 cut(s) 589
BfaI CTAG 1 cut(s) 306
BfmI CTRYAG 2 cut(s) 210, 1055
BisI GCNGC 3 cut(s) 428, 456, 483
BlpI GCTNAGC 1 cut(s) 183
BlsI GCNGC 3 cut(s) 429, 457, 484
BmcAI AGTACT 1 cut(s) 301
Bme1390I CCNGG 1 cut(s) 441
Bme18I GGWCC 2 cut(s) 407, 873
BmgT120I GGNCC 3 cut(s) 407, 800, 873
BmiI GGNNCC 6 cut(s) 109, 420, 802, 841, 847, 874
BmrFI CCNGG 1 cut(s) 441
BmrI ACTGGG 1 cut(s) 542
BmsI GCATC 1 cut(s) 754
BmuI ACTGGG 1 cut(s) 542
BoxI GACNNNNGTC 1 cut(s) 878
BpiI GAAGAC 3 cut(s) 222, 714, 874
BpmI CTGGAG 1 cut(s) 735
Bpu1102I GCTNAGC 1 cut(s) 183
BsaBI GATNNNNATC 1 cut(s) 51
BsaHI GRCGYC 2 cut(s) 529, 860
BsaJI CCNNGG 3 cut(s) 439, 779, 826
BsaWI WCCGGW 4 cut(s) 101, 123, 842, 875
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 3 cut(s) 457, 855, 869
Bse118I RCCGGY 3 cut(s) 123, 430, 875
Bse1I ACTGG 2 cut(s) 297, 548
Bse3DI GCAATG 3 cut(s) 228, 581, 635
Bse8I GATNNNNATC 1 cut(s) 51
BseBI CCWGG 1 cut(s) 441
BseDI CCNNGG 3 cut(s) 439, 779, 826
BseGI GGATG 4 cut(s) 13, 745, 908, 941
BseJI GATNNNNATC 1 cut(s) 51
BseLI CCNNNNNNNGG 3 cut(s) 457, 855, 869
BseMI GCAATG 3 cut(s) 228, 581, 635
BseMII CTCAG 3 cut(s) 174, 225, 428
BseNI ACTGG 2 cut(s) 297, 548
BseSI GKGCMC 1 cut(s) 943
BseXI GCAGC 1 cut(s) 442
BshFI GGCC 2 cut(s) 349, 801
BshTI ACCGGT 2 cut(s) 123, 875
BsiSI CCGG 5 cut(s) 102, 124, 431, 843, 876
BsiWI CGTACG 1 cut(s) 477
BslFI GGGAC 3 cut(s) 540, 871, 886
BslI CCNNNNNNNGG 3 cut(s) 457, 855, 869
BsmFI GGGAC 3 cut(s) 540, 871, 886
BsnI GGCC 2 cut(s) 349, 801
Bsp1286I GDGCHC 1 cut(s) 943
Bsp143I GATC 4 cut(s) 46, 383, 589, 833
Bsp1720I GCTNAGC 1 cut(s) 183
BspACI CCGC 5 cut(s) 428, 458, 483, 735, 957
BspANI GGCC 2 cut(s) 349, 801
BspCNI CTCAG 3 cut(s) 175, 226, 427
BspLI GGNNCC 6 cut(s) 109, 420, 802, 841, 847, 874
BspPI GGATC 2 cut(s) 391, 841
BsrDI GCAATG 3 cut(s) 228, 581, 635
BsrFI RCCGGY 3 cut(s) 123, 430, 875
BsrI ACTGG 2 cut(s) 297, 548
BssAI RCCGGY 3 cut(s) 123, 430, 875
BssECI CCNNGG 3 cut(s) 439, 779, 826
BssMI GATC 4 cut(s) 46, 383, 589, 833
BssNI GRCGYC 2 cut(s) 529, 860
BssT1I CCWWGG 1 cut(s) 826
Bst2UI CCWGG 1 cut(s) 441
Bst4CI ACNGT 3 cut(s) 42, 211, 1046
Bst6I CTCTTC 1 cut(s) 318
BstACI GRCGYC 2 cut(s) 529, 860
BstDEI CTNAG 4 cut(s) 183, 234, 414, 606
BstDSI CCRYGG 1 cut(s) 779
BstEII GGTNACC 2 cut(s) 433, 1001
BstF5I GGATG 4 cut(s) 13, 745, 908, 941
BstKTI GATC 4 cut(s) 49, 386, 592, 836
BstMBI GATC 4 cut(s) 46, 383, 589, 833
BstMWI GCNNNNNNNGC 2 cut(s) 396, 427
BstNI CCWGG 1 cut(s) 441
BstNSI RCATGY 1 cut(s) 265
BstPAI GACNNNNGTC 1 cut(s) 878
BstPI GGTNACC 2 cut(s) 433, 1001
BstSCI CCNGG 1 cut(s) 439
BstSFI CTRYAG 2 cut(s) 210, 1055
BstSLI GKGCMC 1 cut(s) 943
BstV1I GCAGC 1 cut(s) 442
BstV2I GAAGAC 3 cut(s) 222, 714, 874
BsuRI GGCC 2 cut(s) 349, 801
BtgI CCRYGG 1 cut(s) 779
BtsCI GGATG 4 cut(s) 13, 745, 908, 941
BtsI GCAGTG 1 cut(s) 397
BtsIMutI CAGTG 1 cut(s) 397
CaiI CAGNNNCTG 1 cut(s) 554
Cfr10I RCCGGY 3 cut(s) 123, 430, 875
Cfr13I GGNCC 3 cut(s) 407, 800, 873
CseI GACGC 2 cut(s) 537, 868
Csp6I GTAC 5 cut(s) 300, 478, 543, 968, 1047
CspAI ACCGGT 2 cut(s) 123, 875
CviAII CATG 1 cut(s) 262
CviQI GTAC 5 cut(s) 300, 478, 543, 968, 1047
DdeI CTNAG 4 cut(s) 183, 234, 414, 606
DpnI GATC 4 cut(s) 48, 385, 591, 835
DpnII GATC 4 cut(s) 46, 383, 589, 833
EaeI YGGCCR 1 cut(s) 347
Eam1104I CTCTTC 1 cut(s) 318
EarI CTCTTC 1 cut(s) 318
EciI GGCGGA 1 cut(s) 750
Eco130I CCWWGG 1 cut(s) 826
Eco47I GGWCC 2 cut(s) 407, 873
Eco57I CTGAAG 4 cut(s) 159, 198, 576, 998
Eco91I GGTNACC 2 cut(s) 433, 1001
EcoO109I RGGNCCY 1 cut(s) 800
EcoO65I GGTNACC 2 cut(s) 433, 1001
EcoRII CCWGG 1 cut(s) 439
EcoT14I CCWWGG 1 cut(s) 826
ErhI CCWWGG 1 cut(s) 826
FaeI CATG 1 cut(s) 265
FaiI YATR 6 cut(s) 263, 465, 515, 812, 953, 1037
FalI AAGNNNNNCTT 4 cut(s) 171, 203, 971, 1003
FaqI GGGAC 3 cut(s) 540, 871, 886
FatI CATG 1 cut(s) 261
FauI CCCGC 1 cut(s) 964
FbaI TGATCA 1 cut(s) 589
FblI GTMKAC 1 cut(s) 206
Fnu4HI GCNGC 3 cut(s) 428, 456, 483
FokI GGATG 4 cut(s) 20, 732, 895, 948
Fsp4HI GCNGC 3 cut(s) 428, 456, 483
FspBI CTAG 1 cut(s) 306
GluI GCNGC 3 cut(s) 428, 456, 483
GsuI CTGGAG 1 cut(s) 735
HaeIII GGCC 2 cut(s) 349, 801
HapII CCGG 5 cut(s) 102, 124, 431, 843, 876
HgaI GACGC 2 cut(s) 537, 868
Hin1I GRCGYC 2 cut(s) 529, 860
Hin1II CATG 1 cut(s) 265
HincII GTYRAC 3 cut(s) 16, 207, 240
HindII GTYRAC 3 cut(s) 16, 207, 240
HinfI GANTC 7 cut(s) 203, 241, 253, 326, 356, 602, 996
HpaII CCGG 5 cut(s) 102, 124, 431, 843, 876
HphI GGTGA 4 cut(s) 155, 445, 909, 1013
Hpy166II GTNNAC 4 cut(s) 16, 207, 240, 985
Hpy188I TCNGA 5 cut(s) 88, 112, 202, 291, 313
Hpy188III TCNNGA 4 cut(s) 137, 269, 416, 849
Hpy8I GTNNAC 4 cut(s) 16, 207, 240, 985
Hpy99I CGWCG 5 cut(s) 85, 88, 199, 278, 427
HpyAV CCTTC 3 cut(s) 134, 398, 973
HpyCH4III ACNGT 3 cut(s) 42, 211, 1046
HpyCH4V TGCA 1 cut(s) 495
HpyF10VI GCNNNNNNNGC 2 cut(s) 396, 427
HpyF3I CTNAG 4 cut(s) 183, 234, 414, 606
Hsp92I GRCGYC 2 cut(s) 529, 860
Hsp92II CATG 1 cut(s) 265
Ksp22I TGATCA 1 cut(s) 589
Kzo9I GATC 4 cut(s) 46, 383, 589, 833
LmnI GCTCC 3 cut(s) 113, 314, 418
Lsp1109I GCAGC 1 cut(s) 442
LweI GCATC 1 cut(s) 754
MaeI CTAG 1 cut(s) 306
MaeIII GTNAC 5 cut(s) 36, 353, 433, 902, 1001
MalI GATC 4 cut(s) 48, 385, 591, 835
MboI GATC 4 cut(s) 46, 383, 589, 833
MboII GAAGA 5 cut(s) 227, 335, 714, 721, 874
MhlI GDGCHC 1 cut(s) 943
MlsI TGGCCA 1 cut(s) 349
MluCI AATT 3 cut(s) 613, 683, 763
MluNI TGGCCA 1 cut(s) 349
MlyI GAGTC 7 cut(s) 212, 235, 247, 335, 350, 596, 1005
MmeI TCCRAC 3 cut(s) 46, 66, 480
MnlI CCTC 8 cut(s) 139, 162, 710, 759, 807, 814, 926, 1020
Mox20I TGGCCA 1 cut(s) 349
MscI TGGCCA 1 cut(s) 349
MseI TTAA 3 cut(s) 612, 740, 1040
Msp20I TGGCCA 1 cut(s) 349
MspI CCGG 5 cut(s) 102, 124, 431, 843, 876
MspR9I CCNGG 1 cut(s) 441
MvaI CCWGG 1 cut(s) 441
MwoI GCNNNNNNNGC 2 cut(s) 396, 427
NdeII GATC 4 cut(s) 46, 383, 589, 833
NlaIII CATG 1 cut(s) 265
NlaIV GGNNCC 6 cut(s) 109, 420, 802, 841, 847, 874
NmuCI GTSAC 3 cut(s) 353, 433, 1001
NspI RCATGY 1 cut(s) 265
PcsI WCGNNNNNNNCGW 1 cut(s) 203
Pfl23II CGTACG 1 cut(s) 477
PflFI GACNNNGTC 2 cut(s) 862, 995
PinAI ACCGGT 2 cut(s) 123, 875
PkrI GCNGC 3 cut(s) 429, 457, 484
PleI GAGTC 7 cut(s) 211, 235, 247, 334, 350, 596, 1004
PpsI GAGTC 7 cut(s) 211, 235, 247, 334, 350, 596, 1004
PshAI GACNNNNGTC 1 cut(s) 878
PshBI ATTAAT 1 cut(s) 612
Psp6I CCWGG 1 cut(s) 439
PspEI GGTNACC 2 cut(s) 433, 1001
PspGI CCWGG 1 cut(s) 439
PspLI CGTACG 1 cut(s) 477
PspN4I GGNNCC 6 cut(s) 109, 420, 802, 841, 847, 874
PspPI GGNCC 3 cut(s) 407, 800, 873
PstNI CAGNNNCTG 1 cut(s) 554
PsyI GACNNNGTC 2 cut(s) 862, 995
RsaI GTAC 5 cut(s) 301, 479, 544, 969, 1048
RsaNI GTAC 5 cut(s) 300, 478, 543, 968, 1047
SalI GTCGAC 1 cut(s) 205
SaqAI TTAA 3 cut(s) 612, 740, 1040
SatI GCNGC 3 cut(s) 428, 456, 483
Sau3AI GATC 4 cut(s) 46, 383, 589, 833
Sau96I GGNCC 3 cut(s) 407, 800, 873
ScaI AGTACT 1 cut(s) 301
SchI GAGTC 7 cut(s) 212, 235, 247, 335, 350, 596, 1005
ScrFI CCNGG 1 cut(s) 441
SduI GDGCHC 1 cut(s) 943
SfaNI GCATC 1 cut(s) 754
SfcI CTRYAG 2 cut(s) 210, 1055
SgrAI CRCCGGYG 2 cut(s) 123, 430
SinI GGWCC 2 cut(s) 407, 873
Sse9I AATT 3 cut(s) 613, 683, 763
SsiI CCGC 5 cut(s) 428, 458, 483, 735, 957
SspMI CTAG 1 cut(s) 306
StyD4I CCNGG 1 cut(s) 439
StyI CCWWGG 1 cut(s) 826
TaaI ACNGT 3 cut(s) 42, 211, 1046
TaqI TCGA 5 cut(s) 45, 167, 206, 386, 1012
TaqII GACCGA 1 cut(s) 1008
TasI AATT 3 cut(s) 613, 683, 763
TatI WGTACW 2 cut(s) 299, 967
TauI GCSGC 2 cut(s) 430, 485
Tru1I TTAA 3 cut(s) 612, 740, 1040
Tru9I TTAA 3 cut(s) 612, 740, 1040
TscAI CASTG 1 cut(s) 397
TseFI GTSAC 3 cut(s) 353, 433, 1001
TseI GCWGC 1 cut(s) 455
Tsp45I GTSAC 3 cut(s) 353, 433, 1001
TspDTI ATGAA 2 cut(s) 107, 530
TspGWI ACGGA 1 cut(s) 69
TspRI CASTG 1 cut(s) 397
Tth111I GACNNNGTC 2 cut(s) 862, 995
VpaK11BI GGWCC 2 cut(s) 407, 873
VspI ATTAAT 1 cut(s) 612
XceI RCATGY 1 cut(s) 265
XmiI GTMKAC 1 cut(s) 206
XspI CTAG 1 cut(s) 306
ZrmI AGTACT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.