MD11G1090800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0010345
Physical Location & Seq
Reverse (-)
7579701 .. 7583072
3372 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1090800.v1.1.491

Sequence Viewer

Length: 1155 bp
ATGATGGATTTTGTGTGCTCCAAACCAGATGCCAAGGTCTGGGATATTTGTGAAGCAGCTGCTAACTATAATTACAAAGGGTTTATTAGGCCATCAGATTTGAGTTCTCCTTCTTCATCTTCAGCACTTGAGGATTCTGAACTTGTTTCATCTGATCAGTCGACAGAGACTACTACTGATGAGGACGACGATTACATTGCCGAGTTGACACGCCAGATGACTCACTACATGCTTCAAGATGATCACGAGAAAATCAATACTACTAGCTCTCAGAAAAACCAAGAGTTTTTGGGTTCTGTTGGTTCGCAACAGTACTCGGTGTGGTCACCGTTGGGGTCCAGCCATGGCAGTTCAGAAGGGTCATCTCTTGAACCAACGCCACCAGAAACACCAGGCAAAGGCAAAGCTAGGAAGAGCTGTACCTACGCCGACGTTTTGAGAAAGTTGGACAAGTTAGATACAAGAACAACCAACGAAGGGTTAAATCATCCTCGGCGAATAGACCCAAGTACAAAAGTAGACCCAGGTGTTGGATTTTTCTCAAAGCAAGATCTATCTTGCGGTCAAAGCCAAGATTTTCAGAAACTTGAGGCTTATTATAAGGTAAACCAAGAGCACATTTCAAATAAACAAGGATCATCAGCAAATGGAGGGAGACAAGCCAAGATTTGCCATGAGCAATTTGAGCCTAATAATTATCAGCACTTGAAGAAAGGAGGATCTTGTATTGGGTCTACTAATGGAGGAAGGTCAAAGTCTCCAACACAGTTTGGATTGCCTGGTTCAAACCCATGGTTGAACCAGCAAGCAGGACCGGGTATGAGGGCTGTTTTCCTTGGCGGGTCATGTTCGAAAATTGGGTCATCTTCTGGGACAGGAGTATTTTTGCCTTGTGTTATTGGTAGCACTTCACAGTCACCCAAGAAAAGAGGATGTCCCCCGGTTCTTATACCCGCAAAGGTCGTGCAAGCCTTGAAAGTTCACTTTGACAGAGTGGGTGACCTACCTCGACCTAATGCTTCTGGTACCTCTACACAAAATGATGCTTTGAAGGGTGGTAGGGCAAACGCGCATTCAACTAATAAACGTCACTCGCGGACGGTACCGGACATGAACACTAAGGAGATCGGTCTGCCTCAAGAATGGACATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

385

Amino Acids

41.63

Weight (kDa)

8.0

Isoelectric Point (pI)

49.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010345)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59050 AT5G59050 AT5G59050 AT5G59050
fragaria_vesca FvH4_3g37230 FvH4_3g37230
malus_domestica MD03G1082700.v1.1 MD11G1090800.v1.1
prunus_persica Prupe.6G067000_v2.0.a1
pyrus_communis pycom03g06580 pycom11g07550
rosa_chinensis RchiOBHm_Chr5g0066981
rosa_laevigata RLG00000035898
rosa_multiflora Rmu_sc0008378.1_g000002
rosa_roxburghii Rroxscaffold_1G00014150
rosa_rugosa Rorug05G0380300
rosa_samantha Rh5AG439900 Rh5BG457000 Rh5CG479100 Rh5DG471700
rosa_wichuraiana Rw5G041140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 600
Acc65I GGTACC 2 cut(s) 1025, 1102
AccB1I GGYRCC 2 cut(s) 1025, 1102
AccB7I CCANNNNNTGG 2 cut(s) 39, 530
AccI GTMKAC 3 cut(s) 161, 519, 734
AccII CGCG 2 cut(s) 1070, 1096
AciI CCGC 4 cut(s) 561, 840, 954, 1096
AclWI GGATC 2 cut(s) 643, 727
AcuI CTGAAG 1 cut(s) 105
AfaI GTAC 5 cut(s) 314, 421, 511, 1027, 1104
AfiI CCNNNNNNNGG 4 cut(s) 39, 398, 477, 530
AgsI TTSAA 9 cut(s) 236, 371, 624, 709, 786, 799, 976, 1051, 1077
AjnI CCWGG 3 cut(s) 391, 523, 778
AluBI AGCT 4 cut(s) 59, 267, 407, 417
AluI AGCT 4 cut(s) 59, 267, 407, 417
Alw21I GWGCWC 2 cut(s) 20, 618
Alw26I GTCTC 3 cut(s) 161, 649, 762
AlwI GGATC 2 cut(s) 643, 727
AoxI GGCC 1 cut(s) 89
ApeKI GCWGC 2 cut(s) 56, 59
ArsI GACNNNNNNTTYG 2 cut(s) 845, 877
Asp718I GGTACC 2 cut(s) 1025, 1102
AspLEI GCGC 1 cut(s) 1072
AspS9I GGNCC 2 cut(s) 336, 812
AsuC2I CCSGG 2 cut(s) 816, 941
AsuHPI GGTGA 3 cut(s) 318, 909, 1010
AsuII TTCGAA 1 cut(s) 851
AvaII GGWCC 2 cut(s) 336, 812
BanI GGYRCC 2 cut(s) 1025, 1102
BauI CACGAG 1 cut(s) 245
Bbv12I GWGCWC 2 cut(s) 20, 618
BbvI GCAGC 2 cut(s) 46, 68
BccI CCATC 1 cut(s) 100
BcgI CGANNNNNNTGC 2 cut(s) 179, 213
BciT130I CCWGG 3 cut(s) 393, 525, 780
BclI TGATCA 2 cut(s) 154, 241
BcnI CCSGG 2 cut(s) 816, 941
BcoDI GTCTC 3 cut(s) 161, 649, 762
BfaI CTAG 2 cut(s) 264, 408
BglII AGATCT 1 cut(s) 550
BisI GCNGC 2 cut(s) 57, 60
BlsI GCNGC 2 cut(s) 58, 61
BmcAI AGTACT 1 cut(s) 314
Bme1390I CCNGG 5 cut(s) 393, 525, 780, 816, 941
Bme18I GGWCC 2 cut(s) 336, 812
BmgT120I GGNCC 2 cut(s) 336, 812
BmiI GGNNCC 3 cut(s) 337, 1027, 1104
BmrFI CCNGG 5 cut(s) 393, 525, 780, 816, 941
BmsI GCATC 2 cut(s) 19, 1033
Bpu14I TTCGAA 1 cut(s) 851
BpuEI CTTGAG 3 cut(s) 149, 608, 1122
BpuMI CCSGG 2 cut(s) 816, 941
BsaJI CCNNGG 7 cut(s) 33, 343, 491, 523, 791, 835, 939
BsaWI WCCGGW 1 cut(s) 1105
Bsc4I CCNNNNNNNGG 4 cut(s) 39, 398, 477, 530
Bse3DI GCAATG 1 cut(s) 195
BseBI CCWGG 3 cut(s) 393, 525, 780
BseDI CCNNGG 7 cut(s) 33, 343, 491, 523, 791, 835, 939
BseGI GGATG 2 cut(s) 487, 938
BseLI CCNNNNNNNGG 4 cut(s) 39, 398, 477, 530
BseMI GCAATG 1 cut(s) 195
BseMII CTCAG 1 cut(s) 284
BseXI GCAGC 2 cut(s) 46, 68
Bsh1236I CGCG 2 cut(s) 1070, 1096
BshFI GGCC 1 cut(s) 91
BshNI GGYRCC 2 cut(s) 1025, 1102
BsiHKAI GWGCWC 2 cut(s) 20, 618
BsiSI CCGG 3 cut(s) 815, 941, 1106
BslFI GGGAC 2 cut(s) 886, 921
BslI CCNNNNNNNGG 4 cut(s) 39, 398, 477, 530
BsmAI GTCTC 3 cut(s) 161, 649, 762
BsmFI GGGAC 2 cut(s) 886, 921
BsmI GAATGC 1 cut(s) 1072
BsnI GGCC 1 cut(s) 91
Bsp119I TTCGAA 1 cut(s) 851
Bsp1286I GDGCHC 2 cut(s) 20, 618
Bsp143I GATC 6 cut(s) 154, 241, 550, 635, 719, 1125
Bsp19I CCATGG 2 cut(s) 343, 791
BspACI CCGC 4 cut(s) 561, 840, 954, 1096
BspANI GGCC 1 cut(s) 91
BspCNI CTCAG 1 cut(s) 283
BspFNI CGCG 2 cut(s) 1070, 1096
BspLI GGNNCC 3 cut(s) 337, 1027, 1104
BspPI GGATC 2 cut(s) 643, 727
BspQI GCTCTTC 1 cut(s) 407
BspT104I TTCGAA 1 cut(s) 851
BspT107I GGYRCC 2 cut(s) 1025, 1102
BsrDI GCAATG 1 cut(s) 195
BssECI CCNNGG 7 cut(s) 33, 343, 491, 523, 791, 835, 939
BssMI GATC 6 cut(s) 154, 241, 550, 635, 719, 1125
BssSI CACGAG 1 cut(s) 245
BssT1I CCWWGG 4 cut(s) 33, 343, 791, 835
Bst2BI CACGAG 1 cut(s) 245
Bst2UI CCWGG 3 cut(s) 393, 525, 780
Bst4CI ACNGT 5 cut(s) 312, 330, 768, 915, 1102
Bst6I CTCTTC 1 cut(s) 407
BstBI TTCGAA 1 cut(s) 851
BstC8I GCNNGC 2 cut(s) 807, 969
BstDEI CTNAG 2 cut(s) 270, 1119
BstDSI CCRYGG 2 cut(s) 343, 791
BstEII GGTNACC 2 cut(s) 324, 998
BstF5I GGATG 2 cut(s) 487, 938
BstFNI CGCG 2 cut(s) 1070, 1096
BstHHI GCGC 1 cut(s) 1072
BstKTI GATC 6 cut(s) 157, 244, 553, 638, 722, 1128
BstMAI GTCTC 3 cut(s) 161, 649, 762
BstMBI GATC 6 cut(s) 154, 241, 550, 635, 719, 1125
BstMWI GCNNNNNNNGC 2 cut(s) 567, 685
BstNI CCWGG 3 cut(s) 393, 525, 780
BstNSI RCATGY 1 cut(s) 232
BstPI GGTNACC 2 cut(s) 324, 998
BstSCI CCNGG 5 cut(s) 391, 523, 778, 814, 939
BstUI CGCG 2 cut(s) 1070, 1096
BstV1I GCAGC 2 cut(s) 46, 68
BstX2I RGATCY 2 cut(s) 550, 719
BstYI RGATCY 2 cut(s) 550, 719
BsuRI GGCC 1 cut(s) 91
BtgI CCRYGG 2 cut(s) 343, 791
BtsCI GGATG 2 cut(s) 487, 938
Cac8I GCNNGC 2 cut(s) 807, 969
CfoI GCGC 1 cut(s) 1072
Cfr13I GGNCC 2 cut(s) 336, 812
Csp6I GTAC 5 cut(s) 313, 420, 510, 1026, 1103
CviAII CATG 6 cut(s) 229, 344, 674, 792, 846, 1111
CviQI GTAC 5 cut(s) 313, 420, 510, 1026, 1103
DdeI CTNAG 2 cut(s) 270, 1119
DpnI GATC 6 cut(s) 156, 243, 552, 637, 721, 1127
DpnII GATC 6 cut(s) 154, 241, 550, 635, 719, 1125
Eam1104I CTCTTC 1 cut(s) 407
EarI CTCTTC 1 cut(s) 407
Eco130I CCWWGG 4 cut(s) 33, 343, 791, 835
Eco47I GGWCC 2 cut(s) 336, 812
Eco57I CTGAAG 1 cut(s) 105
Eco91I GGTNACC 2 cut(s) 324, 998
EcoO65I GGTNACC 2 cut(s) 324, 998
EcoRII CCWGG 3 cut(s) 391, 523, 778
EcoT14I CCWWGG 4 cut(s) 33, 343, 791, 835
ErhI CCWWGG 4 cut(s) 33, 343, 791, 835
FaeI CATG 6 cut(s) 232, 347, 677, 795, 849, 1114
FaqI GGGAC 2 cut(s) 886, 921
FatI CATG 6 cut(s) 228, 343, 673, 791, 845, 1110
FauI CCCGC 2 cut(s) 833, 961
FbaI TGATCA 2 cut(s) 154, 241
FblI GTMKAC 3 cut(s) 161, 519, 734
Fnu4HI GCNGC 2 cut(s) 57, 60
FokI GGATG 2 cut(s) 474, 945
Fsp4HI GCNGC 2 cut(s) 57, 60
FspBI CTAG 2 cut(s) 264, 408
GlaI GCGC 1 cut(s) 1071
GluI GCNGC 2 cut(s) 57, 60
HaeIII GGCC 1 cut(s) 91
HapII CCGG 3 cut(s) 815, 941, 1106
HhaI GCGC 1 cut(s) 1072
Hin1II CATG 6 cut(s) 232, 347, 677, 795, 849, 1114
Hin6I GCGC 1 cut(s) 1070
HinP1I GCGC 1 cut(s) 1070
HincII GTYRAC 2 cut(s) 162, 207
HindII GTYRAC 2 cut(s) 162, 207
HinfI GANTC 2 cut(s) 134, 220
HpaII CCGG 3 cut(s) 815, 941, 1106
HphI GGTGA 3 cut(s) 318, 909, 1010
Hpy166II GTNNAC 6 cut(s) 162, 207, 520, 607, 735, 982
Hpy188I TCNGA 6 cut(s) 97, 139, 154, 273, 355, 582
Hpy188III TCNNGA 4 cut(s) 236, 245, 368, 1139
Hpy8I GTNNAC 6 cut(s) 162, 207, 520, 607, 735, 982
Hpy99I CGWCG 2 cut(s) 191, 434
HpyAV CCTTC 5 cut(s) 120, 350, 470, 741, 1045
HpyCH4III ACNGT 5 cut(s) 312, 330, 768, 915, 1102
HpyCH4IV ACGT 2 cut(s) 432, 1087
HpyCH4V TGCA 1 cut(s) 967
HpyF10VI GCNNNNNNNGC 2 cut(s) 567, 685
HpyF3I CTNAG 2 cut(s) 270, 1119
HpySE526I ACGT 2 cut(s) 432, 1087
Hsp92II CATG 6 cut(s) 232, 347, 677, 795, 849, 1114
HspAI GCGC 1 cut(s) 1070
KpnI GGTACC 2 cut(s) 1029, 1106
Ksp22I TGATCA 2 cut(s) 154, 241
Kzo9I GATC 6 cut(s) 154, 241, 550, 635, 719, 1125
LguI GCTCTTC 1 cut(s) 407
LmnI GCTCC 1 cut(s) 23
Lsp1109I GCAGC 2 cut(s) 46, 68
LweI GCATC 2 cut(s) 19, 1033
MaeI CTAG 2 cut(s) 264, 408
MaeII ACGT 2 cut(s) 432, 1087
MaeIII GTNAC 4 cut(s) 324, 915, 998, 1088
MalI GATC 6 cut(s) 156, 243, 552, 637, 721, 1127
MboI GATC 6 cut(s) 154, 241, 550, 635, 719, 1125
MboII GAAGA 5 cut(s) 105, 111, 424, 721, 858
MflI RGATCY 2 cut(s) 550, 719
MhlI GDGCHC 2 cut(s) 20, 618
MluCI AATT 4 cut(s) 70, 680, 694, 855
MlyI GAGTC 1 cut(s) 214
MmeI TCCRAC 3 cut(s) 426, 511, 785
MseI TTAA 1 cut(s) 482
MspA1I CMGCKG 1 cut(s) 59
MspI CCGG 3 cut(s) 815, 941, 1106
MspR9I CCNGG 5 cut(s) 393, 525, 780, 816, 941
Mva1269I GAATGC 1 cut(s) 1072
MvaI CCWGG 3 cut(s) 393, 525, 780
MvnI CGCG 2 cut(s) 1070, 1096
MwoI GCNNNNNNNGC 2 cut(s) 567, 685
NciI CCSGG 2 cut(s) 816, 941
NcoI CCATGG 2 cut(s) 343, 791
NdeII GATC 6 cut(s) 154, 241, 550, 635, 719, 1125
NlaIII CATG 6 cut(s) 232, 347, 677, 795, 849, 1114
NlaIV GGNNCC 3 cut(s) 337, 1027, 1104
NmeAIII GCCGAG 2 cut(s) 226, 472
NmuCI GTSAC 4 cut(s) 324, 915, 998, 1088
NspI RCATGY 1 cut(s) 232
NspV TTCGAA 1 cut(s) 851
PciSI GCTCTTC 1 cut(s) 407
PctI GAATGC 1 cut(s) 1072
PfeI GAWTC 1 cut(s) 134
PflMI CCANNNNNTGG 2 cut(s) 39, 530
PkrI GCNGC 2 cut(s) 58, 61
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
PsiI TTATAA 1 cut(s) 600
Psp6I CCWGG 3 cut(s) 391, 523, 778
PspEI GGTNACC 2 cut(s) 324, 998
PspGI CCWGG 3 cut(s) 391, 523, 778
PspN4I GGNNCC 3 cut(s) 337, 1027, 1104
PspPI GGNCC 2 cut(s) 336, 812
PsuI RGATCY 2 cut(s) 550, 719
PvuII CAGCTG 1 cut(s) 59
RsaI GTAC 5 cut(s) 314, 421, 511, 1027, 1104
RsaNI GTAC 5 cut(s) 313, 420, 510, 1026, 1103
SalI GTCGAC 1 cut(s) 160
SapI GCTCTTC 1 cut(s) 407
SaqAI TTAA 1 cut(s) 482
SatI GCNGC 2 cut(s) 57, 60
Sau3AI GATC 6 cut(s) 154, 241, 550, 635, 719, 1125
Sau96I GGNCC 2 cut(s) 336, 812
ScaI AGTACT 1 cut(s) 314
SchI GAGTC 1 cut(s) 214
ScrFI CCNGG 5 cut(s) 393, 525, 780, 816, 941
SduI GDGCHC 2 cut(s) 20, 618
SfaNI GCATC 2 cut(s) 19, 1033
SfuI TTCGAA 1 cut(s) 851
SinI GGWCC 2 cut(s) 336, 812
SmlI CTYRAG 3 cut(s) 128, 587, 1137
SmoI CTYRAG 3 cut(s) 128, 587, 1137
Sse9I AATT 4 cut(s) 70, 680, 694, 855
SsiI CCGC 4 cut(s) 561, 840, 954, 1096
SspMI CTAG 2 cut(s) 264, 408
StyD4I CCNGG 5 cut(s) 391, 523, 778, 814, 939
StyI CCWWGG 4 cut(s) 33, 343, 791, 835
TaaI ACNGT 5 cut(s) 312, 330, 768, 915, 1102
TaiI ACGT 2 cut(s) 435, 1090
TaqI TCGA 3 cut(s) 161, 851, 1009
TaqII GACCGA 1 cut(s) 1118
TasI AATT 4 cut(s) 70, 680, 694, 855
TatI WGTACW 2 cut(s) 312, 509
TfiI GAWTC 1 cut(s) 134
Tru1I TTAA 1 cut(s) 482
Tru9I TTAA 1 cut(s) 482
TseFI GTSAC 4 cut(s) 324, 915, 998, 1088
TseI GCWGC 2 cut(s) 56, 59
Tsp45I GTSAC 4 cut(s) 324, 915, 998, 1088
TspDTI ATGAA 3 cut(s) 105, 138, 1127
Van91I CCANNNNNTGG 2 cut(s) 39, 530
VpaK11BI GGWCC 2 cut(s) 336, 812
XceI RCATGY 1 cut(s) 232
XmiI GTMKAC 3 cut(s) 161, 519, 734
XspI CTAG 2 cut(s) 264, 408
ZrmI AGTACT 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.