FvH4_3g37230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0010345
Physical Location & Seq
Forward (+)
31875999 .. 31879650
3652 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g37230.t1

Sequence Viewer

Length: 1164 bp
ATGATGGATGTACTGTTCGATCATCATCATTTTCTCAGCGAGCGGGAAACTCCGTCGTCGGAGATGAAGGTTTCCGTCGGCTCCGATTACAAGCAGGGTTGGAGTTTTCCTGAAGGTGAGGGAAAAGGGTTTGTTGGGTCGAGGACTACTGAAGCTGAGCTTGTTTCGTCGTCAGAGTCGACTGAGGAGGACGACGATTACATTGCTGAGTTGACTCGCCAGATGACTCACTACATGCTTCAGGACGACGACAAACACGCTCTCAAAACCAGTATTACTAGCTCCGAGAAAAACGAAGAGTCGTGGGGTTGTGTCGGTTGGCAGAGTAACTCGATGACGATGTGGTCGCCGTTGGGATCGAGCAATGGAAGCCCAGAAGGTCCATCTGAGGAGCCATCGCCGCCGGTGACGCCAGGCAAAGACAAAGCTTCGGAGCATAAAATTCCTCCGTCGTACGCCGCCGTTTTGTGCAAGTTGGACAAGTTAGAAACCAACAAACAGGGAAGACCAAGTGGAACTACCCAAGTAGCTGAAGCTGAAAATCCAAAGCAAGGTGTAGCTTTTGATCAAAGCCAAGACTCTAAGATTAATTTGAAGCTAACGCAAGGGCGAAGTACTAAGAAGCAAAGCTCAGTAAATAATGGTAGACAACCCAAGCATATTACTCATCAGACATTTGAGTCCTACAACCTAAACCATAAGAAAGTAGGATGTGATGCTAATGGCGGATTAAGGACTTCTCCACCTATTTCCACTTTGTCCTCAACCCCGTGGCTGAACAACCAGCAAGGCCCCTCAAATATGAGGGCGGTCTTCCTAGGTGGGTCGGGCGGCGCCGGTGCTAGAGTTGGGACGCCGTCTTGTGGGACTGGTGTCTTCTTACCCTGTGTTATTGGTAACACATCTCAGTCACCCAAGAATAAAAGAGGATGTGCCCCTGTTCTAATACCCGCAAAGGTAGTACAAGCCCTGAAGGTTCATTTTGACCGAGTCGGTGACCTACCTCGACAAAACCCTACTGCCTTCCCCATACAAAACGATTCCTCAAAGAGTGGAAGGAGGACAAGCACGTCTGCAAATAGAAAGCGCCACTCGAGAGGAGCGGCACCACCGCCGGACATGAACAACAATGAGATGGGTCTACCTCAAGAATGGACGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

388

Amino Acids

42.0

Weight (kDa)

7.67

Isoelectric Point (pI)

58.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010345)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59050 AT5G59050 AT5G59050 AT5G59050
fragaria_vesca FvH4_3g37230 FvH4_3g37230
malus_domestica MD03G1082700.v1.1 MD11G1090800.v1.1
prunus_persica Prupe.6G067000_v2.0.a1
pyrus_communis pycom03g06580 pycom11g07550
rosa_chinensis RchiOBHm_Chr5g0066981
rosa_laevigata RLG00000035898
rosa_multiflora Rmu_sc0008378.1_g000002
rosa_roxburghii Rroxscaffold_1G00014150
rosa_rugosa Rorug05G0380300
rosa_samantha Rh5AG439900 Rh5BG457000 Rh5CG479100 Rh5DG471700
rosa_wichuraiana Rw5G041140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 343, 679, 1069
AccB1I GGYRCC 2 cut(s) 833, 1105
AccBSI CCGCTC 2 cut(s) 43, 1103
AccI GTMKAC 3 cut(s) 179, 646, 1141
AciI CCGC 9 cut(s) 43, 401, 459, 726, 809, 831, 951, 1103, 1112
AclWI GGATC 1 cut(s) 364
AcsI RAATTY 1 cut(s) 441
AcuI CTGAAG 5 cut(s) 132, 171, 224, 552, 992
AcyI GRCGYC 3 cut(s) 410, 834, 854
AfaI GTAC 4 cut(s) 12, 455, 616, 963
AfiI CCNNNNNNNGG 2 cut(s) 551, 863
AgsI TTSAA 1 cut(s) 595
AjiI CACGTC 1 cut(s) 1071
AjnI CCWGG 1 cut(s) 412
AloI GAACNNNNNNTCC 1 cut(s) 31
AluBI AGCT 9 cut(s) 155, 160, 282, 428, 530, 536, 560, 598, 630
AluI AGCT 9 cut(s) 155, 160, 282, 428, 530, 536, 560, 598, 630
AlwI GGATC 1 cut(s) 364
Ama87I CYCGRG 1 cut(s) 1093
AoxI GGCC 1 cut(s) 790
ApoI RAATTY 1 cut(s) 441
AseI ATTAAT 1 cut(s) 588
AspA2I CCTAGG 1 cut(s) 817
AspLEI GCGC 2 cut(s) 836, 1089
AspS9I GGNCC 2 cut(s) 380, 791
AsuHPI GGTGA 4 cut(s) 128, 418, 903, 1007
AvaI CYCGRG 1 cut(s) 1093
AvaII GGWCC 1 cut(s) 380
AvrII CCTAGG 1 cut(s) 817
BaeGI GKGCMC 1 cut(s) 937
BanI GGYRCC 2 cut(s) 833, 1105
BbsI GAAGAC 3 cut(s) 511, 805, 868
BccI CCATC 3 cut(s) 391, 403, 1129
BceAI ACGGC 3 cut(s) 334, 446, 841
BcgI CGANNNNNNTGC 2 cut(s) 185, 219
BciT130I CCWGG 1 cut(s) 414
BclI TGATCA 1 cut(s) 565
BfaI CTAG 3 cut(s) 279, 818, 843
BfoI RGCGCY 2 cut(s) 837, 1090
BisI GCNGC 4 cut(s) 401, 459, 832, 1104
BlnI CCTAGG 1 cut(s) 817
BlpI GCTNAGC 1 cut(s) 156
BlsI GCNGC 4 cut(s) 402, 460, 833, 1105
BmcAI AGTACT 1 cut(s) 616
Bme1390I CCNGG 1 cut(s) 414
Bme18I GGWCC 1 cut(s) 380
BmeT110I CYCGRG 1 cut(s) 1093
BmgBI CACGTC 1 cut(s) 1071
BmgT120I GGNCC 2 cut(s) 380, 791
BmiI GGNNCC 5 cut(s) 82, 393, 793, 835, 1107
BmrFI CCNGG 1 cut(s) 414
BmsI GCATC 1 cut(s) 706
BoxI GACNNNNGTC 1 cut(s) 872
BpiI GAAGAC 3 cut(s) 511, 805, 868
Bpu1102I GCTNAGC 1 cut(s) 156
BpuEI CTTGAG 1 cut(s) 1131
BsaBI GATNNNNATC 1 cut(s) 24
BsaHI GRCGYC 3 cut(s) 410, 834, 854
BsaJI CCNNGG 2 cut(s) 770, 817
Bsc4I CCNNNNNNNGG 2 cut(s) 551, 863
Bse118I RCCGGY 2 cut(s) 403, 836
Bse1I ACTGG 2 cut(s) 270, 874
Bse3DI GCAATG 2 cut(s) 201, 370
Bse8I GATNNNNATC 1 cut(s) 24
BseBI CCWGG 1 cut(s) 414
BseDI CCNNGG 2 cut(s) 770, 817
BseGI GGATG 3 cut(s) 13, 716, 935
BseJI GATNNNNATC 1 cut(s) 24
BseLI CCNNNNNNNGG 2 cut(s) 551, 863
BseMI GCAATG 2 cut(s) 201, 370
BseMII CTCAG 7 cut(s) 49, 147, 174, 198, 378, 645, 920
BseNI ACTGG 2 cut(s) 270, 874
BseRI GAGGAG 3 cut(s) 200, 404, 1113
BseSI GKGCMC 1 cut(s) 937
BshFI GGCC 1 cut(s) 792
BshNI GGYRCC 2 cut(s) 833, 1105
BsiHKCI CYCGRG 1 cut(s) 1093
BsiSI CCGG 3 cut(s) 404, 837, 1115
BsiWI CGTACG 1 cut(s) 453
BslFI GGGAC 2 cut(s) 865, 880
BslI CCNNNNNNNGG 2 cut(s) 551, 863
BsmFI GGGAC 2 cut(s) 865, 880
BsnI GGCC 1 cut(s) 792
BsoBI CYCGRG 1 cut(s) 1093
Bsp1286I GDGCHC 1 cut(s) 937
Bsp143I GATC 3 cut(s) 19, 356, 565
Bsp1720I GCTNAGC 1 cut(s) 156
BspACI CCGC 9 cut(s) 43, 401, 459, 726, 809, 831, 951, 1103, 1112
BspANI GGCC 1 cut(s) 792
BspCNI CTCAG 7 cut(s) 48, 148, 175, 199, 379, 644, 919
BspLI GGNNCC 5 cut(s) 82, 393, 793, 835, 1107
BspPI GGATC 1 cut(s) 364
BspT107I GGYRCC 2 cut(s) 833, 1105
BsrBI CCGCTC 2 cut(s) 43, 1103
BsrDI GCAATG 2 cut(s) 201, 370
BsrFI RCCGGY 2 cut(s) 403, 836
BsrI ACTGG 2 cut(s) 270, 874
BssAI RCCGGY 2 cut(s) 403, 836
BssECI CCNNGG 2 cut(s) 770, 817
BssMI GATC 3 cut(s) 19, 356, 565
BssNI GRCGYC 3 cut(s) 410, 834, 854
BssT1I CCWWGG 1 cut(s) 817
Bst2UI CCWGG 1 cut(s) 414
Bst4CI ACNGT 1 cut(s) 15
Bst6I CTCTTC 1 cut(s) 291
BstACI GRCGYC 3 cut(s) 410, 834, 854
BstC8I GCNNGC 1 cut(s) 41
BstDEI CTNAG 9 cut(s) 35, 156, 183, 207, 387, 582, 618, 631, 906
BstDSI CCRYGG 1 cut(s) 770
BstEII GGTNACC 1 cut(s) 995
BstF5I GGATG 3 cut(s) 13, 716, 935
BstH2I RGCGCY 2 cut(s) 837, 1090
BstHHI GCGC 2 cut(s) 836, 1089
BstKTI GATC 3 cut(s) 22, 359, 568
BstMBI GATC 3 cut(s) 19, 356, 565
BstMWI GCNNNNNNNGC 3 cut(s) 369, 400, 409
BstNI CCWGG 1 cut(s) 414
BstNSI RCATGY 1 cut(s) 238
BstPAI GACNNNNGTC 1 cut(s) 872
BstPI GGTNACC 1 cut(s) 995
BstSCI CCNGG 1 cut(s) 412
BstSLI GKGCMC 1 cut(s) 937
BstV2I GAAGAC 3 cut(s) 511, 805, 868
BsuRI GGCC 1 cut(s) 792
BtgI CCRYGG 1 cut(s) 770
BtgZI GCGATG 1 cut(s) 381
BtrI CACGTC 1 cut(s) 1071
BtsCI GGATG 3 cut(s) 13, 716, 935
Cac8I GCNNGC 1 cut(s) 41
CfoI GCGC 2 cut(s) 836, 1089
Cfr10I RCCGGY 2 cut(s) 403, 836
Cfr13I GGNCC 2 cut(s) 380, 791
CseI GACGC 2 cut(s) 418, 862
Csp6I GTAC 4 cut(s) 11, 454, 615, 962
CviAII CATG 2 cut(s) 235, 1120
CviQI GTAC 4 cut(s) 11, 454, 615, 962
DdeI CTNAG 9 cut(s) 35, 156, 183, 207, 387, 582, 618, 631, 906
DinI GGCGCC 1 cut(s) 835
DpnI GATC 3 cut(s) 21, 358, 567
DpnII GATC 3 cut(s) 19, 356, 565
DrdI GACNNNNNNGTC 3 cut(s) 343, 679, 1069
DseDI GACNNNNNNGTC 3 cut(s) 343, 679, 1069
Eam1104I CTCTTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 291
EciI GGCGGA 1 cut(s) 741
Eco130I CCWWGG 1 cut(s) 817
Eco47I GGWCC 1 cut(s) 380
Eco57I CTGAAG 5 cut(s) 132, 171, 224, 552, 992
Eco88I CYCGRG 1 cut(s) 1093
Eco91I GGTNACC 1 cut(s) 995
EcoO109I RGGNCCY 1 cut(s) 791
EcoO65I GGTNACC 1 cut(s) 995
EcoRII CCWGG 1 cut(s) 412
EcoT14I CCWWGG 1 cut(s) 817
EgeI GGCGCC 1 cut(s) 835
EheI GGCGCC 1 cut(s) 835
ErhI CCWWGG 1 cut(s) 817
FaeI CATG 2 cut(s) 238, 1123
FaiI YATR 7 cut(s) 236, 438, 660, 699, 803, 1031, 1121
FalI AAGNNNNNCTT 2 cut(s) 144, 176
FaqI GGGAC 2 cut(s) 865, 880
FatI CATG 2 cut(s) 234, 1119
FauI CCCGC 2 cut(s) 36, 958
FbaI TGATCA 1 cut(s) 565
FblI GTMKAC 3 cut(s) 179, 646, 1141
Fnu4HI GCNGC 4 cut(s) 401, 459, 832, 1104
FokI GGATG 3 cut(s) 20, 723, 942
Fsp4HI GCNGC 4 cut(s) 401, 459, 832, 1104
FspBI CTAG 3 cut(s) 279, 818, 843
GlaI GCGC 2 cut(s) 835, 1088
GluI GCNGC 4 cut(s) 401, 459, 832, 1104
HaeII RGCGCY 2 cut(s) 837, 1090
HaeIII GGCC 1 cut(s) 792
HapII CCGG 3 cut(s) 404, 837, 1115
HgaI GACGC 2 cut(s) 418, 862
HhaI GCGC 2 cut(s) 836, 1089
Hin1I GRCGYC 3 cut(s) 410, 834, 854
Hin1II CATG 2 cut(s) 238, 1123
Hin6I GCGC 2 cut(s) 834, 1087
HinP1I GCGC 2 cut(s) 834, 1087
HincII GTYRAC 2 cut(s) 180, 213
HindII GTYRAC 2 cut(s) 180, 213
HindIII AAGCTT 1 cut(s) 426
HinfI GANTC 8 cut(s) 176, 214, 226, 299, 578, 680, 990, 1040
HpaII CCGG 3 cut(s) 404, 837, 1115
HphI GGTGA 4 cut(s) 128, 418, 903, 1007
Hpy166II GTNNAC 4 cut(s) 180, 213, 647, 1142
Hpy188I TCNGA 7 cut(s) 61, 85, 175, 286, 388, 433, 672
Hpy188III TCNNGA 4 cut(s) 110, 242, 1095, 1148
Hpy8I GTNNAC 4 cut(s) 180, 213, 647, 1142
Hpy99I CGWCG 7 cut(s) 58, 61, 80, 172, 197, 251, 454
HpyAV CCTTC 6 cut(s) 61, 107, 371, 967, 1033, 1050
HpyCH4III ACNGT 1 cut(s) 15
HpyCH4IV ACGT 2 cut(s) 1070, 1157
HpyCH4V TGCA 2 cut(s) 471, 1076
HpyF10VI GCNNNNNNNGC 3 cut(s) 369, 400, 409
HpyF3I CTNAG 9 cut(s) 35, 156, 183, 207, 387, 582, 618, 631, 906
HpySE526I ACGT 2 cut(s) 1070, 1157
Hsp92I GRCGYC 3 cut(s) 410, 834, 854
Hsp92II CATG 2 cut(s) 238, 1123
HspAI GCGC 2 cut(s) 834, 1087
KasI GGCGCC 1 cut(s) 833
Ksp22I TGATCA 1 cut(s) 565
Kzo9I GATC 3 cut(s) 19, 356, 565
LmnI GCTCC 5 cut(s) 86, 287, 391, 433, 1100
LweI GCATC 1 cut(s) 706
MaeI CTAG 3 cut(s) 279, 818, 843
MaeII ACGT 2 cut(s) 1070, 1157
MaeIII GTNAC 5 cut(s) 326, 406, 896, 909, 995
MalI GATC 3 cut(s) 21, 358, 567
MbiI CCGCTC 2 cut(s) 43, 1103
MboI GATC 3 cut(s) 19, 356, 565
MboII GAAGA 4 cut(s) 308, 516, 805, 868
MhlI GDGCHC 1 cut(s) 937
MluCI AATT 2 cut(s) 441, 589
Mly113I GGCGCC 1 cut(s) 834
MlyI GAGTC 7 cut(s) 185, 208, 220, 308, 572, 689, 999
MmeI TCCRAC 3 cut(s) 39, 80, 456
MseI TTAA 2 cut(s) 588, 731
MspI CCGG 3 cut(s) 404, 837, 1115
MspR9I CCNGG 1 cut(s) 414
MvaI CCWGG 1 cut(s) 414
MwoI GCNNNNNNNGC 3 cut(s) 369, 400, 409
NarI GGCGCC 1 cut(s) 834
NdeII GATC 3 cut(s) 19, 356, 565
NlaIII CATG 2 cut(s) 238, 1123
NlaIV GGNNCC 5 cut(s) 82, 393, 793, 835, 1107
NmuCI GTSAC 3 cut(s) 406, 909, 995
NspI RCATGY 1 cut(s) 238
PaeR7I CTCGAG 1 cut(s) 1093
PcsI WCGNNNNNNNCGW 1 cut(s) 176
PfeI GAWTC 1 cut(s) 1040
Pfl23II CGTACG 1 cut(s) 453
PflFI GACNNNGTC 2 cut(s) 856, 989
PkrI GCNGC 4 cut(s) 402, 460, 833, 1105
PleI GAGTC 7 cut(s) 184, 208, 220, 307, 572, 688, 998
PluTI GGCGCC 1 cut(s) 837
PpsI GAGTC 7 cut(s) 184, 208, 220, 307, 572, 688, 998
PshAI GACNNNNGTC 1 cut(s) 872
PshBI ATTAAT 1 cut(s) 588
Psp6I CCWGG 1 cut(s) 412
PspEI GGTNACC 1 cut(s) 995
PspGI CCWGG 1 cut(s) 412
PspLI CGTACG 1 cut(s) 453
PspN4I GGNNCC 5 cut(s) 82, 393, 793, 835, 1107
PspPI GGNCC 2 cut(s) 380, 791
PsyI GACNNNGTC 2 cut(s) 856, 989
RsaI GTAC 4 cut(s) 12, 455, 616, 963
RsaNI GTAC 4 cut(s) 11, 454, 615, 962
SalI GTCGAC 1 cut(s) 178
SaqAI TTAA 2 cut(s) 588, 731
SatI GCNGC 4 cut(s) 401, 459, 832, 1104
Sau3AI GATC 3 cut(s) 19, 356, 565
Sau96I GGNCC 2 cut(s) 380, 791
ScaI AGTACT 1 cut(s) 616
SchI GAGTC 7 cut(s) 185, 208, 220, 308, 572, 689, 999
ScrFI CCNGG 1 cut(s) 414
SduI GDGCHC 1 cut(s) 937
SfaNI GCATC 1 cut(s) 706
SfoI GGCGCC 1 cut(s) 835
Sfr274I CTCGAG 1 cut(s) 1093
SgrAI CRCCGGYG 2 cut(s) 403, 836
SinI GGWCC 1 cut(s) 380
SlaI CTCGAG 1 cut(s) 1093
SmlI CTYRAG 2 cut(s) 1093, 1146
SmoI CTYRAG 2 cut(s) 1093, 1146
Sse9I AATT 2 cut(s) 441, 589
SsiI CCGC 9 cut(s) 43, 401, 459, 726, 809, 831, 951, 1103, 1112
SspDI GGCGCC 1 cut(s) 833
SspMI CTAG 3 cut(s) 279, 818, 843
StyD4I CCNGG 1 cut(s) 412
StyI CCWWGG 1 cut(s) 817
TaaI ACNGT 1 cut(s) 15
TaiI ACGT 2 cut(s) 1073, 1160
TaqI TCGA 7 cut(s) 18, 140, 179, 332, 359, 1006, 1094
TaqII GACCGA 1 cut(s) 1002
TasI AATT 2 cut(s) 441, 589
TatI WGTACW 3 cut(s) 10, 614, 961
TauI GCSGC 4 cut(s) 403, 461, 834, 1106
TfiI GAWTC 1 cut(s) 1040
Tru1I TTAA 2 cut(s) 588, 731
Tru9I TTAA 2 cut(s) 588, 731
TseFI GTSAC 3 cut(s) 406, 909, 995
Tsp45I GTSAC 3 cut(s) 406, 909, 995
TspDTI ATGAA 3 cut(s) 80, 968, 1136
TspGWI ACGGA 3 cut(s) 42, 64, 438
Tth111I GACNNNGTC 2 cut(s) 856, 989
VpaK11BI GGWCC 1 cut(s) 380
VspI ATTAAT 1 cut(s) 588
XapI RAATTY 1 cut(s) 441
XceI RCATGY 1 cut(s) 238
XhoI CTCGAG 1 cut(s) 1093
XmaJI CCTAGG 1 cut(s) 817
XmiI GTMKAC 3 cut(s) 179, 646, 1141
XspI CTAG 3 cut(s) 279, 818, 843
ZrmI AGTACT 1 cut(s) 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.