Rroxscaffold_1G00014150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0010345
Physical Location & Seq
Reverse (-)
17486132 .. 17489670
3539 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00014150.1

Sequence Viewer

Length: 747 bp
ATGATGGATGTTGTTGACTTCCAACGCGGGAGAGAGTTACTGTTCGATCATCATCATTTTCTCAACGAGCAGGAAACTCCGTCGTCGGAGATGAAGTTTTCCGGTGGCTCCGATTACAAGCACGGGTGGGGTTTTCCTGAAGGTGAGGGGAAAGGGTTTGTTGGGTCGAGGACTACTGAAGTTGAGCTTGTTTCGTCGTCCGAGTCGACTGTAGAAGACGACGATTACATTGCTGAGTTGACTCGCCAGATGACTCACTACATGCTTCAAGACGACGACAAACACGCTCTGAAAACCAGTACAACTAGCTCCGAGAAAAACGAAGTGTCGTGGGGTTGTGTCGGTTGGCTAAGTGACTCTACGACGATGTGGTCGCCGTTGGGATCGAGCAGTGGAAGCCCAGAAGGTCCATCTCAGGAGCCGTCGCCGCCGGTGACCCCAGGCAAATACCAAGCTTCGGAACATAAAAGTCCGTCGTACGCCGCCGTTTTGTGCAAGTTGGACAAGTTAGATATGAACAAACAGGGAAGCCCAAGTGGAAGTACCCCAGTAGCTGAAGCTGAAAATCCAAAGCAATGTGTAGCTTTTGATCAAAGCCAAGACTCTAAGATTAATTTTACGCAAAAGCAAGGGCAAAGCTCAAAGAAGCAAGGCTCAATGAGTAATGGTAGACAACCGAAGAATATTGCTCATCAAAAATTTAAGTCCTACGACCAAAACCAGAAGAAAGGAGGGTCTCTCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

248

Amino Acids

27.29

Weight (kDa)

5.5

Isoelectric Point (pI)

60.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010345)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59050 AT5G59050 AT5G59050 AT5G59050
fragaria_vesca FvH4_3g37230 FvH4_3g37230
malus_domestica MD03G1082700.v1.1 MD11G1090800.v1.1
prunus_persica Prupe.6G067000_v2.0.a1
pyrus_communis pycom03g06580 pycom11g07550
rosa_chinensis RchiOBHm_Chr5g0066981
rosa_laevigata RLG00000035898
rosa_multiflora Rmu_sc0008378.1_g000002
rosa_roxburghii Rroxscaffold_1G00014150
rosa_rugosa Rorug05G0380300
rosa_samantha Rh5AG439900 Rh5BG457000 Rh5CG479100 Rh5DG471700
rosa_wichuraiana Rw5G041140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 370
AccI GTMKAC 2 cut(s) 206, 670
AccII CGCG 1 cut(s) 27
AciI CCGC 3 cut(s) 27, 428, 483
AclWI GGATC 1 cut(s) 391
AcsI RAATTY 1 cut(s) 698
AcuI CTGAAG 3 cut(s) 159, 198, 576
AfaI GTAC 3 cut(s) 301, 479, 544
AfiI CCNNNNNNNGG 1 cut(s) 457
AgsI TTSAA 1 cut(s) 269
AjnI CCWGG 1 cut(s) 439
AluBI AGCT 7 cut(s) 187, 309, 455, 554, 560, 584, 639
AluI AGCT 7 cut(s) 187, 309, 455, 554, 560, 584, 639
Alw26I GTCTC 1 cut(s) 741
AlwI GGATC 1 cut(s) 391
AlwNI CAGNNNCTG 1 cut(s) 554
ApoI RAATTY 1 cut(s) 698
AseI ATTAAT 1 cut(s) 612
AspS9I GGNCC 1 cut(s) 407
AsuHPI GGTGA 2 cut(s) 155, 445
AvaII GGWCC 1 cut(s) 407
BbsI GAAGAC 1 cut(s) 222
BccI CCATC 1 cut(s) 418
BceAI ACGGC 3 cut(s) 361, 406, 470
BcgI CGANNNNNNTGC 2 cut(s) 212, 246
BciT130I CCWGG 1 cut(s) 441
BclI TGATCA 1 cut(s) 589
BcoDI GTCTC 1 cut(s) 741
BfaI CTAG 1 cut(s) 306
BfmI CTRYAG 1 cut(s) 210
BisI GCNGC 2 cut(s) 428, 483
BlsI GCNGC 2 cut(s) 429, 484
Bme1390I CCNGG 1 cut(s) 441
Bme18I GGWCC 1 cut(s) 407
BmgT120I GGNCC 1 cut(s) 407
BmiI GGNNCC 2 cut(s) 109, 420
BmrFI CCNGG 1 cut(s) 441
BmrI ACTGGG 1 cut(s) 542
BmuI ACTGGG 1 cut(s) 542
BpiI GAAGAC 1 cut(s) 222
BplI GAGNNNNNCTC 1 cut(s) 723
BsaBI GATNNNNATC 1 cut(s) 51
BsaI GGTCTC 1 cut(s) 741
BsaJI CCNNGG 1 cut(s) 439
BsaWI WCCGGW 1 cut(s) 101
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 1 cut(s) 457
Bse118I RCCGGY 1 cut(s) 430
Bse1I ACTGG 2 cut(s) 297, 548
Bse3DI GCAATG 2 cut(s) 228, 581
Bse8I GATNNNNATC 1 cut(s) 51
BseBI CCWGG 1 cut(s) 441
BseDI CCNNGG 1 cut(s) 439
BseGI GGATG 1 cut(s) 13
BseJI GATNNNNATC 1 cut(s) 51
BseLI CCNNNNNNNGG 1 cut(s) 457
BseMI GCAATG 2 cut(s) 228, 581
BseMII CTCAG 2 cut(s) 225, 428
BseNI ACTGG 2 cut(s) 297, 548
Bsh1236I CGCG 1 cut(s) 27
BsiSI CCGG 2 cut(s) 102, 431
BsiWI CGTACG 1 cut(s) 477
BslI CCNNNNNNNGG 1 cut(s) 457
BsmAI GTCTC 1 cut(s) 741
Bso31I GGTCTC 1 cut(s) 741
Bsp143I GATC 3 cut(s) 46, 383, 589
BspACI CCGC 3 cut(s) 27, 428, 483
BspCNI CTCAG 2 cut(s) 226, 427
BspFNI CGCG 1 cut(s) 27
BspLI GGNNCC 2 cut(s) 109, 420
BspPI GGATC 1 cut(s) 391
BspTNI GGTCTC 1 cut(s) 741
BsrDI GCAATG 2 cut(s) 228, 581
BsrFI RCCGGY 1 cut(s) 430
BsrI ACTGG 2 cut(s) 297, 548
BssAI RCCGGY 1 cut(s) 430
BssECI CCNNGG 1 cut(s) 439
BssMI GATC 3 cut(s) 46, 383, 589
Bst2UI CCWGG 1 cut(s) 441
Bst4CI ACNGT 2 cut(s) 42, 211
BstDEI CTNAG 4 cut(s) 234, 350, 414, 606
BstEII GGTNACC 1 cut(s) 433
BstF5I GGATG 1 cut(s) 13
BstFNI CGCG 1 cut(s) 27
BstKTI GATC 3 cut(s) 49, 386, 592
BstMAI GTCTC 1 cut(s) 741
BstMBI GATC 3 cut(s) 46, 383, 589
BstMWI GCNNNNNNNGC 2 cut(s) 396, 427
BstNI CCWGG 1 cut(s) 441
BstNSI RCATGY 1 cut(s) 265
BstPI GGTNACC 1 cut(s) 433
BstSCI CCNGG 1 cut(s) 439
BstSFI CTRYAG 1 cut(s) 210
BstUI CGCG 1 cut(s) 27
BstV2I GAAGAC 1 cut(s) 222
BtsCI GGATG 1 cut(s) 13
BtsI GCAGTG 1 cut(s) 397
BtsIMutI CAGTG 1 cut(s) 397
CaiI CAGNNNCTG 1 cut(s) 554
Cfr10I RCCGGY 1 cut(s) 430
Cfr13I GGNCC 1 cut(s) 407
Csp6I GTAC 3 cut(s) 300, 478, 543
CviAII CATG 1 cut(s) 262
CviQI GTAC 3 cut(s) 300, 478, 543
DdeI CTNAG 4 cut(s) 234, 350, 414, 606
DpnI GATC 3 cut(s) 48, 385, 591
DpnII GATC 3 cut(s) 46, 383, 589
DrdI GACNNNNNNGTC 1 cut(s) 370
DseDI GACNNNNNNGTC 1 cut(s) 370
Eco31I GGTCTC 1 cut(s) 741
Eco47I GGWCC 1 cut(s) 407
Eco57I CTGAAG 3 cut(s) 159, 198, 576
Eco91I GGTNACC 1 cut(s) 433
EcoO65I GGTNACC 1 cut(s) 433
EcoRII CCWGG 1 cut(s) 439
FaeI CATG 1 cut(s) 265
FaiI YATR 3 cut(s) 263, 465, 515
FalI AAGNNNNNCTT 2 cut(s) 171, 203
FatI CATG 1 cut(s) 261
FauI CCCGC 1 cut(s) 20
FbaI TGATCA 1 cut(s) 589
FblI GTMKAC 2 cut(s) 206, 670
Fnu4HI GCNGC 2 cut(s) 428, 483
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 2 cut(s) 428, 483
FspBI CTAG 1 cut(s) 306
GluI GCNGC 2 cut(s) 428, 483
HapII CCGG 2 cut(s) 102, 431
Hin1II CATG 1 cut(s) 265
HincII GTYRAC 3 cut(s) 16, 207, 240
HindII GTYRAC 3 cut(s) 16, 207, 240
HindIII AAGCTT 1 cut(s) 453
HinfI GANTC 5 cut(s) 203, 241, 253, 356, 602
HpaII CCGG 2 cut(s) 102, 431
HphI GGTGA 2 cut(s) 155, 445
Hpy166II GTNNAC 4 cut(s) 16, 207, 240, 671
Hpy188I TCNGA 6 cut(s) 88, 112, 202, 291, 313, 460
Hpy188III TCNNGA 3 cut(s) 137, 269, 416
Hpy8I GTNNAC 4 cut(s) 16, 207, 240, 671
Hpy99I CGWCG 8 cut(s) 85, 88, 199, 224, 278, 367, 427, 478
HpyAV CCTTC 2 cut(s) 134, 398
HpyCH4III ACNGT 2 cut(s) 42, 211
HpyCH4V TGCA 1 cut(s) 495
HpyF10VI GCNNNNNNNGC 2 cut(s) 396, 427
HpyF3I CTNAG 4 cut(s) 234, 350, 414, 606
Hsp92II CATG 1 cut(s) 265
Ksp22I TGATCA 1 cut(s) 589
Kzo9I GATC 3 cut(s) 46, 383, 589
LmnI GCTCC 3 cut(s) 113, 314, 418
MaeI CTAG 1 cut(s) 306
MaeIII GTNAC 3 cut(s) 36, 353, 433
MalI GATC 3 cut(s) 48, 385, 591
MboI GATC 3 cut(s) 46, 383, 589
MboII GAAGA 3 cut(s) 227, 691, 736
MluCI AATT 2 cut(s) 613, 698
MlyI GAGTC 5 cut(s) 212, 235, 247, 350, 596
MmeI TCCRAC 3 cut(s) 46, 66, 480
MnlI CCTC 3 cut(s) 139, 162, 725
MseI TTAA 2 cut(s) 612, 702
MspI CCGG 2 cut(s) 102, 431
MspR9I CCNGG 1 cut(s) 441
MvaI CCWGG 1 cut(s) 441
MvnI CGCG 1 cut(s) 27
MwoI GCNNNNNNNGC 2 cut(s) 396, 427
NdeII GATC 3 cut(s) 46, 383, 589
NlaIII CATG 1 cut(s) 265
NlaIV GGNNCC 2 cut(s) 109, 420
NmuCI GTSAC 2 cut(s) 353, 433
NspI RCATGY 1 cut(s) 265
PcsI WCGNNNNNNNCGW 1 cut(s) 203
Pfl23II CGTACG 1 cut(s) 477
PkrI GCNGC 2 cut(s) 429, 484
PleI GAGTC 5 cut(s) 211, 235, 247, 350, 596
PpsI GAGTC 5 cut(s) 211, 235, 247, 350, 596
PshBI ATTAAT 1 cut(s) 612
Psp6I CCWGG 1 cut(s) 439
PspEI GGTNACC 1 cut(s) 433
PspGI CCWGG 1 cut(s) 439
PspLI CGTACG 1 cut(s) 477
PspN4I GGNNCC 2 cut(s) 109, 420
PspPI GGNCC 1 cut(s) 407
PstNI CAGNNNCTG 1 cut(s) 554
RsaI GTAC 3 cut(s) 301, 479, 544
RsaNI GTAC 3 cut(s) 300, 478, 543
SalI GTCGAC 1 cut(s) 205
SaqAI TTAA 2 cut(s) 612, 702
SatI GCNGC 2 cut(s) 428, 483
Sau3AI GATC 3 cut(s) 46, 383, 589
Sau96I GGNCC 1 cut(s) 407
SchI GAGTC 5 cut(s) 212, 235, 247, 350, 596
ScrFI CCNGG 1 cut(s) 441
SetI ASST 9 cut(s) 145, 189, 311, 409, 457, 556, 562, 586, 641
SfcI CTRYAG 1 cut(s) 210
SgrAI CRCCGGYG 1 cut(s) 430
SinI GGWCC 1 cut(s) 407
Sse9I AATT 2 cut(s) 613, 698
SsiI CCGC 3 cut(s) 27, 428, 483
SspI AATATT 1 cut(s) 685
SspMI CTAG 1 cut(s) 306
StyD4I CCNGG 1 cut(s) 439
TaaI ACNGT 2 cut(s) 42, 211
TaqI TCGA 4 cut(s) 45, 167, 206, 386
TasI AATT 2 cut(s) 613, 698
TatI WGTACW 1 cut(s) 299
TauI GCSGC 2 cut(s) 430, 485
Tru1I TTAA 2 cut(s) 612, 702
Tru9I TTAA 2 cut(s) 612, 702
TscAI CASTG 1 cut(s) 397
TseFI GTSAC 2 cut(s) 353, 433
Tsp45I GTSAC 2 cut(s) 353, 433
TspDTI ATGAA 2 cut(s) 107, 530
TspGWI ACGGA 2 cut(s) 69, 462
TspRI CASTG 1 cut(s) 397
VpaK11BI GGWCC 1 cut(s) 407
VspI ATTAAT 1 cut(s) 612
XapI RAATTY 1 cut(s) 698
XceI RCATGY 1 cut(s) 265
XmiI GTMKAC 2 cut(s) 206, 670
XspI CTAG 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.