Rorug05G0380300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0010345
Physical Location & Seq
Reverse (-)
51629067 .. 51629531
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0380300.1

Sequence Viewer

Length: 465 bp
ATGTTTCCTCTGAAACTCGCTGTGTTTTTCACAGCACTGTGTTTGTCTGTCTTCTCCAACCTTGTTTTCATCAAGGAGATCTCTGGAGACGCCACACCTGCTTCTCCTAGTGCTAATTGCGTCACTTGCACTACATGTCAGTACCCATGTCCTCCCGCAGGAGGGGACCCCTTATATCCCCCACCTCCACCATCACAAACCGGAGAGTACCAGCCACCGCCACCGCCTCAACAGCCTAGTCATCAAGGAAAATGTCCCCCAGGTCAGTATCAGTGTTGCCAATACCCTCAGGGATACTCCCCTCCGGGCCCGATTCCTCAGTACCTCACCCCTCCAGGGACCTTTGGAGGAGGAGGAGGAGGAGGATATGTGCCTTACCCTTACAATTCGGCTTCTTCGTCTCCTTTGTCAGTCTTGCTTTCAGTACTTGTGATGGTGCTGTTCTCAGCTGCTGTTATCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

16.06

Weight (kDa)

5.46

Isoelectric Point (pI)

60.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010345)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G59050 AT5G59050 AT5G59050 AT5G59050
fragaria_vesca FvH4_3g37230 FvH4_3g37230
malus_domestica MD03G1082700.v1.1 MD11G1090800.v1.1
prunus_persica Prupe.6G067000_v2.0.a1
pyrus_communis pycom03g06580 pycom11g07550
rosa_chinensis RchiOBHm_Chr5g0066981
rosa_laevigata RLG00000035898
rosa_multiflora Rmu_sc0008378.1_g000002
rosa_roxburghii Rroxscaffold_1G00014150
rosa_rugosa Rorug05G0380300
rosa_samantha Rh5AG439900 Rh5BG457000 Rh5CG479100 Rh5DG471700
rosa_wichuraiana Rw5G041140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 106
Acc36I ACCTGC 1 cut(s) 106
AciI CCGC 3 cut(s) 156, 218, 224
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 4 cut(s) 143, 209, 323, 426
AfiI CCNNNNNNNGG 4 cut(s) 158, 161, 162, 336
AflIII ACRYGT 1 cut(s) 134
AjnI CCWGG 2 cut(s) 259, 334
AjuI GAANNNNNNNTTGG 2 cut(s) 50, 82
AluBI AGCT 1 cut(s) 449
AluI AGCT 1 cut(s) 449
Alw26I GTCTC 2 cut(s) 81, 405
AlwNI CAGNNNCTG 1 cut(s) 452
AoxI GGCC 1 cut(s) 307
ApaI GGGCCC 1 cut(s) 311
ApeKI GCWGC 1 cut(s) 449
AspS9I GGNCC 4 cut(s) 166, 307, 308, 339
AsuC2I CCSGG 1 cut(s) 306
AsuHPI GGTGA 1 cut(s) 319
AvaII GGWCC 2 cut(s) 166, 339
AxyI CCTNAGG 1 cut(s) 288
BaeGI GKGCMC 1 cut(s) 311
BanII GRGCYC 1 cut(s) 311
BbsI GAAGAC 1 cut(s) 43
BbvI GCAGC 1 cut(s) 436
BccI CCATC 2 cut(s) 199, 427
BciT130I CCWGG 2 cut(s) 261, 336
BciVI GTATCC 1 cut(s) 287
BcnI CCSGG 1 cut(s) 306
BcoDI GTCTC 2 cut(s) 81, 405
BfaI CTAG 2 cut(s) 108, 237
BfuAI ACCTGC 1 cut(s) 106
BfuI GTATCC 1 cut(s) 287
BglII AGATCT 1 cut(s) 78
BisI GCNGC 1 cut(s) 450
BlsI GCNGC 1 cut(s) 451
BmcAI AGTACT 1 cut(s) 426
Bme1390I CCNGG 3 cut(s) 261, 306, 336
Bme18I GGWCC 2 cut(s) 166, 339
BmgT120I GGNCC 4 cut(s) 166, 307, 308, 339
BmiI GGNNCC 4 cut(s) 167, 168, 309, 340
BmrFI CCNGG 3 cut(s) 261, 306, 336
BpiI GAAGAC 1 cut(s) 43
BpmI CTGGAG 2 cut(s) 105, 318
BpuMI CCSGG 1 cut(s) 306
BsaHI GRCGYC 1 cut(s) 90
BsaJI CCNNGG 2 cut(s) 259, 335
BsaWI WCCGGW 1 cut(s) 200
BsaXI ACNNNNNCTCC 2 cut(s) 354, 384
Bsc4I CCNNNNNNNGG 4 cut(s) 158, 161, 162, 336
Bse21I CCTNAGG 1 cut(s) 288
BseBI CCWGG 2 cut(s) 261, 336
BseDI CCNNGG 2 cut(s) 259, 335
BseLI CCNNNNNNNGG 4 cut(s) 158, 161, 162, 336
BseMII CTCAG 3 cut(s) 302, 332, 459
BseRI GAGGAG 5 cut(s) 363, 366, 369, 372, 375
BseSI GKGCMC 1 cut(s) 311
BseXI GCAGC 1 cut(s) 436
BshFI GGCC 1 cut(s) 309
BsiSI CCGG 2 cut(s) 201, 305
BslFI GGGAC 3 cut(s) 179, 240, 352
BslI CCNNNNNNNGG 4 cut(s) 158, 161, 162, 336
BsmAI GTCTC 2 cut(s) 81, 405
BsmBI CGTCTC 2 cut(s) 81, 405
BsmFI GGGAC 3 cut(s) 179, 240, 352
BsnI GGCC 1 cut(s) 309
Bsp120I GGGCCC 1 cut(s) 307
Bsp1286I GDGCHC 1 cut(s) 311
Bsp143I GATC 1 cut(s) 78
BspACI CCGC 3 cut(s) 156, 218, 224
BspANI GGCC 1 cut(s) 309
BspCNI CTCAG 3 cut(s) 301, 331, 458
BspLI GGNNCC 4 cut(s) 167, 168, 309, 340
BspMI ACCTGC 1 cut(s) 106
BssECI CCNNGG 2 cut(s) 259, 335
BssMI GATC 1 cut(s) 78
BssNI GRCGYC 1 cut(s) 90
Bst2UI CCWGG 2 cut(s) 261, 336
Bst4CI ACNGT 1 cut(s) 39
BstACI GRCGYC 1 cut(s) 90
BstDEI CTNAG 3 cut(s) 288, 318, 445
BstENI CCTNNNNNAGG 1 cut(s) 156
BstKTI GATC 1 cut(s) 81
BstMAI GTCTC 2 cut(s) 81, 405
BstMBI GATC 1 cut(s) 78
BstMWI GCNNNNNNNGC 3 cut(s) 98, 126, 232
BstNI CCWGG 2 cut(s) 261, 336
BstNSI RCATGY 1 cut(s) 138
BstSCI CCNGG 3 cut(s) 259, 304, 334
BstSLI GKGCMC 1 cut(s) 311
BstV1I GCAGC 1 cut(s) 436
BstV2I GAAGAC 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
Bsu36I CCTNAGG 1 cut(s) 288
BsuI GTATCC 1 cut(s) 287
BsuRI GGCC 1 cut(s) 309
BtsIMutI CAGTG 2 cut(s) 35, 278
BveI ACCTGC 1 cut(s) 106
CaiI CAGNNNCTG 1 cut(s) 452
Cfr13I GGNCC 4 cut(s) 166, 307, 308, 339
CseI GACGC 2 cut(s) 98, 109
Csp6I GTAC 4 cut(s) 142, 208, 322, 425
CviAII CATG 2 cut(s) 135, 147
CviJI RGCY 5 cut(s) 214, 235, 309, 392, 449
CviKI_1 RGCY 5 cut(s) 214, 235, 309, 392, 449
CviQI GTAC 4 cut(s) 142, 208, 322, 425
DdeI CTNAG 3 cut(s) 288, 318, 445
DpnI GATC 1 cut(s) 80
DpnII GATC 1 cut(s) 78
Eco24I GRGCYC 1 cut(s) 311
Eco47I GGWCC 2 cut(s) 166, 339
Eco81I CCTNAGG 1 cut(s) 288
EcoNI CCTNNNNNAGG 1 cut(s) 156
EcoO109I RGGNCCY 2 cut(s) 166, 339
EcoRII CCWGG 2 cut(s) 259, 334
EcoT38I GRGCYC 1 cut(s) 311
Esp3I CGTCTC 2 cut(s) 81, 405
FaeI CATG 2 cut(s) 138, 150
FaiI YATR 4 cut(s) 136, 148, 175, 369
FaqI GGGAC 3 cut(s) 179, 240, 352
FatI CATG 2 cut(s) 134, 146
FauI CCCGC 1 cut(s) 163
Fnu4HI GCNGC 1 cut(s) 450
FriOI GRGCYC 1 cut(s) 311
Fsp4HI GCNGC 1 cut(s) 450
FspBI CTAG 2 cut(s) 108, 237
GluI GCNGC 1 cut(s) 450
GsuI CTGGAG 2 cut(s) 105, 318
HaeIII GGCC 1 cut(s) 309
HapII CCGG 2 cut(s) 201, 305
HgaI GACGC 2 cut(s) 98, 109
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 2 cut(s) 138, 150
HinfI GANTC 1 cut(s) 313
HpaII CCGG 2 cut(s) 201, 305
HphI GGTGA 1 cut(s) 319
Hpy188I TCNGA 1 cut(s) 12
Hpy188III TCNNGA 1 cut(s) 84
HpyCH4III ACNGT 1 cut(s) 39
HpyCH4V TGCA 1 cut(s) 129
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 126, 232
HpyF3I CTNAG 3 cut(s) 288, 318, 445
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 2 cut(s) 138, 150
KflI GGGWCCC 1 cut(s) 166
Kzo9I GATC 1 cut(s) 78
Lsp1109I GCAGC 1 cut(s) 436
MaeI CTAG 2 cut(s) 108, 237
MaeIII GTNAC 1 cut(s) 121
MalI GATC 1 cut(s) 80
MboI GATC 1 cut(s) 78
MboII GAAGA 2 cut(s) 43, 387
MflI RGATCY 1 cut(s) 78
MhlI GDGCHC 1 cut(s) 311
MluCI AATT 2 cut(s) 115, 385
MmeI TCCRAC 1 cut(s) 81
MseI TTAA 1 cut(s) 463
MspA1I CMGCKG 1 cut(s) 449
MspI CCGG 2 cut(s) 201, 305
MspR9I CCNGG 3 cut(s) 261, 306, 336
MvaI CCWGG 2 cut(s) 261, 336
MwoI GCNNNNNNNGC 3 cut(s) 98, 126, 232
NciI CCSGG 1 cut(s) 306
NdeII GATC 1 cut(s) 78
NlaIII CATG 2 cut(s) 138, 150
NlaIV GGNNCC 4 cut(s) 167, 168, 309, 340
NmuCI GTSAC 1 cut(s) 121
NspI RCATGY 1 cut(s) 138
PaqCI CACCTGC 1 cut(s) 106
PciI ACATGT 1 cut(s) 134
PcsI WCGNNNNNNNCGW 1 cut(s) 395
PfeI GAWTC 1 cut(s) 313
PkrI GCNGC 1 cut(s) 451
PpuMI RGGWCCY 2 cut(s) 166, 339
PscI ACATGT 1 cut(s) 134
Psp5II RGGWCCY 2 cut(s) 166, 339
Psp6I CCWGG 2 cut(s) 259, 334
PspGI CCWGG 2 cut(s) 259, 334
PspN4I GGNNCC 4 cut(s) 167, 168, 309, 340
PspOMI GGGCCC 1 cut(s) 307
PspPI GGNCC 4 cut(s) 166, 307, 308, 339
PspPPI RGGWCCY 2 cut(s) 166, 339
PstNI CAGNNNCTG 1 cut(s) 452
PsuI RGATCY 1 cut(s) 78
PvuII CAGCTG 1 cut(s) 449
RsaI GTAC 4 cut(s) 143, 209, 323, 426
RsaNI GTAC 4 cut(s) 142, 208, 322, 425
SaqAI TTAA 1 cut(s) 463
SatI GCNGC 1 cut(s) 450
Sau3AI GATC 1 cut(s) 78
Sau96I GGNCC 4 cut(s) 166, 307, 308, 339
ScaI AGTACT 1 cut(s) 426
ScrFI CCNGG 3 cut(s) 261, 306, 336
SduI GDGCHC 1 cut(s) 311
SetI ASST 7 cut(s) 63, 100, 187, 265, 327, 344, 451
SinI GGWCC 2 cut(s) 166, 339
Sse9I AATT 2 cut(s) 115, 385
SsiI CCGC 3 cut(s) 156, 218, 224
SspMI CTAG 2 cut(s) 108, 237
StyD4I CCNGG 3 cut(s) 259, 304, 334
TaaI ACNGT 1 cut(s) 39
TasI AATT 2 cut(s) 115, 385
TatI WGTACW 1 cut(s) 424
TfiI GAWTC 1 cut(s) 313
Tru1I TTAA 1 cut(s) 463
Tru9I TTAA 1 cut(s) 463
TscAI CASTG 2 cut(s) 42, 278
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 1 cut(s) 449
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 1 cut(s) 58
TspRI CASTG 2 cut(s) 42, 278
VpaK11BI GGWCC 2 cut(s) 166, 339
XagI CCTNNNNNAGG 1 cut(s) 156
XceI RCATGY 1 cut(s) 138
XspI CTAG 2 cut(s) 108, 237
ZrmI AGTACT 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.