Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004479

Physical Location & Seq

Genomic Coordinates Forward (+)

23971063 .. 23972964

Gene Structure 1902 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G59440.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGAAACGGATCTGCTCGGTTTCAAGTGTTCAACTTTTTTCCAGAAGTTTCAGAGCTTTAGCATCGCCACGTTCCTTGAACTATCCCCTGCAGTGTATCAAGCGTTCATCAGTTCGGATGGAGAGTAGCAACTTTTCTTCTGGTGTCAGAACCGAGAGTAGTGTGAAGCCAAGAGGAGCATTGATAGTTCTAGAAGGTCTTGATCGCAGCGGGAAATCAACACAGTGTGCTAAGCTACTCTCTTTCTTGAATGGTTTAGGACATCCGACCGAGCTCTGGAGATTCCCCGATAGAGAGACGAGTGTCGGTCAGATGATATCCGCGTATCTTTCTAATAAGTCGCAGTTAGATGATCACACAATTCATCTCCTTTTCAGCGCCAATCGTTGGGAGAAAAGGTCGTTGATGGAGGAAAAGCTAAAAACAGGAACTACGCTTATCGTGGATCGTTATTCGTATTCTGGTGTTGCATTCTCATCAGCTAAAGGTCTCGATATCGAATGGTGCAAGGCTCCCGAAATCGGGTTACTGGCTCCAGATTCTGTACTTTACCTGGACATTTCACCTGAAAGAGCTGCTGAGAGAGGTGGATATGGAGATGAGAGGTATGAGCGAGTGGAGTTTCAGAAGAAAGTTGCAGACTTTTATCAAACCCTTGGCGATTCTTCATGGAAGATAATCAATGCCAGTGATGCCATGGAGGAAGTAGAGAAGAAGATTCAACAAGTGGTATTAGATCAAGTCAAAGAATGTACTGAAGGAAAGCCTCTGTCTCTCCTATGGTCGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004798 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006139 GO:0006220 GO:0006221 GO:0006227 GO:0006233 GO:0006235 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009041 GO:0009058 GO:0009117 GO:0009123 GO:0009132 GO:0009133 GO:0009138 GO:0009139 GO:0009141 GO:0009142 GO:0009147 GO:0009148 GO:0009165 GO:0009186 GO:0009189 GO:0009196 GO:0009197 GO:0009200 GO:0009202 GO:0009211 GO:0009212 GO:0009219 GO:0009221 GO:0009262 GO:0009263 GO:0009265 GO:0009394 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0019692 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046072 GO:0046075 GO:0046077 GO:0046385 GO:0046483 GO:0046940 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050145 GO:0055086 GO:0061458 GO:0070013 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

Thymidylate_kin

Protein Analysis

263

Amino Acids

29.55

Weight (kDa)

8.51

Isoelectric Point (pI)

43.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thymidylate_kin	PF02223	72 - 248	3.1e-45	Thymidylate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59440 AT5G59440 AT5G59440
fragaria_vesca	FvH4_6g52930 FvH4_6g52930 FvH4_6g52930 FvH4_6g52930
malus_domestica	MD09G1015900.v1.1 MD17G1016300.v1.1
prunus_persica	Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G301400_v2.0.a1 Prupe.3G301400_v2.0.a1
pyrus_communis	pycom111g01300 pycom17g01320
rosa_chinensis	RchiOBHm_Chr2g0174641
rosa_laevigata	RLG00000022279
rosa_multiflora	Rmu_sc0007189.1_g000008
rosa_roxburghii	Rroxscaffold_2G00077980
rosa_rugosa	Rorug02G0578500 Rorug02G0578500 Rorug02G0578500
rosa_samantha	Rh2AG659600 Rh2BG670400 Rh2CG633700 Rh2DG684100
rosa_wichuraiana	Rw2G054020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	387
AccII	CGCG	1 cut(s)	323
AciI	CCGC	2 cut(s)	210, 321
AclWI	GGATC	2 cut(s)	17, 453
AcuI	CTGAAG	1 cut(s)	777
AdeI	CACNNNGTG	1 cut(s)	227
AfaI	GTAC	2 cut(s)	546, 754
AfiI	CCNNNNNNNGG	4 cut(s)	276, 387, 521, 522
AgsI	TTSAA	5 cut(s)	24, 32, 79, 250, 722
AjnI	CCWGG	1 cut(s)	552
AluBI	AGCT	6 cut(s)	56, 235, 274, 418, 482, 575
AluI	AGCT	6 cut(s)	56, 235, 274, 418, 482, 575
Alw21I	GWGCWC	1 cut(s)	276
Alw26I	GTCTC	3 cut(s)	290, 494, 777
AlwI	GGATC	2 cut(s)	17, 453
AlwNI	CAGNNNCTG	1 cut(s)	542
ApeKI	GCWGC	2 cut(s)	207, 575
AspLEI	GCGC	1 cut(s)	380
AsuHPI	GGTGA	1 cut(s)	555
BanII	GRGCYC	1 cut(s)	276
Bbv12I	GWGCWC	1 cut(s)	276
BbvI	GCAGC	2 cut(s)	219, 562
BccI	CCATC	2 cut(s)	112, 400
BciT130I	CCWGG	1 cut(s)	554
BclI	TGATCA	1 cut(s)	352
BcoDI	GTCTC	3 cut(s)	290, 494, 777
BfaI	CTAG	1 cut(s)	191
BfmI	CTRYAG	1 cut(s)	89
BfoI	RGCGCY	1 cut(s)	381
BisI	GCNGC	2 cut(s)	208, 576
BlpI	GCTNAGC	1 cut(s)	231
BlsI	GCNGC	2 cut(s)	209, 577
Bme1390I	CCNGG	1 cut(s)	554
BmiI	GGNNCC	2 cut(s)	513, 534
BmrFI	CCNGG	1 cut(s)	554
BmsI	GCATC	2 cut(s)	71, 682
BoxI	GACNNNNGTC	1 cut(s)	302
BpmI	CTGGAG	2 cut(s)	298, 519
Bpu1102I	GCTNAGC	1 cut(s)	231
BsaI	GGTCTC	1 cut(s)	494
BsaJI	CCNNGG	2 cut(s)	655, 696
BsaXI	ACNNNNNCTCC	2 cut(s)	383, 413
Bsc4I	CCNNNNNNNGG	4 cut(s)	276, 387, 521, 522
Bse1I	ACTGG	2 cut(s)	534, 687
BseBI	CCWGG	1 cut(s)	554
BseDI	CCNNGG	2 cut(s)	655, 696
BseGI	GGATG	2 cut(s)	123, 262
BseLI	CCNNNNNNNGG	4 cut(s)	276, 387, 521, 522
BseMII	CTCAG	1 cut(s)	570
BseNI	ACTGG	2 cut(s)	534, 687
BseRI	GAGGAG	1 cut(s)	189
BseXI	GCAGC	2 cut(s)	219, 562
Bsh1236I	CGCG	1 cut(s)	323
Bsh1285I	CGRYCG	1 cut(s)	270
BsiEI	CGRYCG	1 cut(s)	270
BsiHKAI	GWGCWC	1 cut(s)	276
BslI	CCNNNNNNNGG	4 cut(s)	276, 387, 521, 522
BsmAI	GTCTC	3 cut(s)	290, 494, 777
BsmBI	CGTCTC	1 cut(s)	290
BsmI	GAATGC	1 cut(s)	470
Bso31I	GGTCTC	1 cut(s)	494
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp143I	GATC	5 cut(s)	9, 202, 352, 445, 736
Bsp1720I	GCTNAGC	1 cut(s)	231
Bsp19I	CCATGG	1 cut(s)	696
BspACI	CCGC	2 cut(s)	210, 321
BspCNI	CTCAG	1 cut(s)	571
BspFNI	CGCG	1 cut(s)	323
BspLI	GGNNCC	2 cut(s)	513, 534
BspMAI	CTGCAG	1 cut(s)	93
BspPI	GGATC	2 cut(s)	17, 453
BspTNI	GGTCTC	1 cut(s)	494
BsrI	ACTGG	2 cut(s)	534, 687
BssECI	CCNNGG	2 cut(s)	655, 696
BssMI	GATC	5 cut(s)	9, 202, 352, 445, 736
BssT1I	CCWWGG	2 cut(s)	655, 696
Bst2UI	CCWGG	1 cut(s)	554
Bst4CI	ACNGT	1 cut(s)	225
BstDEI	CTNAG	2 cut(s)	231, 579
BstDSI	CCRYGG	1 cut(s)	696
BstF5I	GGATG	2 cut(s)	123, 262
BstFNI	CGCG	1 cut(s)	323
BstH2I	RGCGCY	1 cut(s)	381
BstHHI	GCGC	1 cut(s)	380
BstKTI	GATC	5 cut(s)	12, 205, 355, 448, 739
BstMAI	GTCTC	3 cut(s)	290, 494, 777
BstMBI	GATC	5 cut(s)	9, 202, 352, 445, 736
BstMCI	CGRYCG	1 cut(s)	270
BstMWI	GCNNNNNNNGC	1 cut(s)	692
BstNI	CCWGG	1 cut(s)	554
BstPAI	GACNNNNGTC	1 cut(s)	302
BstSCI	CCNGG	1 cut(s)	552
BstSFI	CTRYAG	1 cut(s)	89
BstUI	CGCG	1 cut(s)	323
BstV1I	GCAGC	2 cut(s)	219, 562
BstX2I	RGATCY	1 cut(s)	9
BstYI	RGATCY	1 cut(s)	9
BtgI	CCRYGG	1 cut(s)	696
BtgZI	GCGATG	1 cut(s)	48
BtsCI	GGATG	2 cut(s)	123, 262
BtsI	GCAGTG	1 cut(s)	98
BtsIMutI	CAGTG	3 cut(s)	98, 230, 694
CaiI	CAGNNNCTG	1 cut(s)	542
CfoI	GCGC	1 cut(s)	380
Csp6I	GTAC	2 cut(s)	545, 753
CspCI	CAANNNNNGTGG	2 cut(s)	57, 92
CviAII	CATG	2 cut(s)	669, 697
CviQI	GTAC	2 cut(s)	545, 753
DdeI	CTNAG	2 cut(s)	231, 579
DpnI	GATC	5 cut(s)	11, 204, 354, 447, 738
DpnII	GATC	5 cut(s)	9, 202, 352, 445, 736
DraIII	CACNNNGTG	1 cut(s)	227
Ecl136II	GAGCTC	1 cut(s)	274
Eco130I	CCWWGG	2 cut(s)	655, 696
Eco24I	GRGCYC	1 cut(s)	276
Eco31I	GGTCTC	1 cut(s)	494
Eco32I	GATATC	2 cut(s)	318, 496
Eco53kI	GAGCTC	1 cut(s)	274
Eco57I	CTGAAG	1 cut(s)	777
EcoICRI	GAGCTC	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	552
EcoRV	GATATC	2 cut(s)	318, 496
EcoT14I	CCWWGG	2 cut(s)	655, 696
EcoT38I	GRGCYC	1 cut(s)	276
ErhI	CCWWGG	2 cut(s)	655, 696
Esp3I	CGTCTC	1 cut(s)	290
FaeI	CATG	2 cut(s)	672, 700
FaiI	YATR	6 cut(s)	594, 609, 670, 698, 781, 790
FatI	CATG	2 cut(s)	668, 696
FauI	CCCGC	1 cut(s)	203
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	2 cut(s)	208, 576
FokI	GGATG	2 cut(s)	130, 249
FriOI	GRGCYC	1 cut(s)	276
Fsp4HI	GCNGC	2 cut(s)	208, 576
FspBI	CTAG	1 cut(s)	191
GlaI	GCGC	1 cut(s)	379
GluI	GCNGC	2 cut(s)	208, 576
GsuI	CTGGAG	2 cut(s)	298, 519
HaeII	RGCGCY	1 cut(s)	381
HhaI	GCGC	1 cut(s)	380
Hin1II	CATG	2 cut(s)	672, 700
Hin6I	GCGC	1 cut(s)	378
HinP1I	GCGC	1 cut(s)	378
HinfI	GANTC	4 cut(s)	282, 539, 662, 718
HphI	GGTGA	1 cut(s)	555
Hpy188I	TCNGA	6 cut(s)	53, 117, 149, 267, 312, 627
Hpy188III	TCNNGA	8 cut(s)	42, 191, 200, 247, 277, 491, 515, 536
HpyAV	CCTTC	2 cut(s)	188, 752
HpyCH4III	ACNGT	1 cut(s)	225
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	4 cut(s)	91, 470, 507, 638
HpyF10VI	GCNNNNNNNGC	1 cut(s)	692
HpyF3I	CTNAG	2 cut(s)	231, 579
HpySE526I	ACGT	1 cut(s)	70
Hsp92II	CATG	2 cut(s)	672, 700
HspAI	GCGC	1 cut(s)	378
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	5 cut(s)	9, 202, 352, 445, 736
LmnI	GCTCC	3 cut(s)	176, 517, 538
Lsp1109I	GCAGC	2 cut(s)	219, 562
LweI	GCATC	2 cut(s)	71, 682
MaeI	CTAG	1 cut(s)	191
MaeII	ACGT	1 cut(s)	70
MaeIII	GTNAC	1 cut(s)	525
MalI	GATC	5 cut(s)	11, 204, 354, 447, 738
MboI	GATC	5 cut(s)	9, 202, 352, 445, 736
MboII	GAAGA	6 cut(s)	129, 640, 657, 685, 724, 727
MflI	RGATCY	1 cut(s)	9
MhlI	GDGCHC	1 cut(s)	276
MluCI	AATT	1 cut(s)	360
MmeI	TCCRAC	1 cut(s)	290
MnlI	CCTC	6 cut(s)	167, 403, 578, 597, 694, 777
MspA1I	CMGCKG	1 cut(s)	210
MspR9I	CCNGG	1 cut(s)	554
Mva1269I	GAATGC	1 cut(s)	470
MvaI	CCWGG	1 cut(s)	554
MvnI	CGCG	1 cut(s)	323
MwoI	GCNNNNNNNGC	1 cut(s)	692
NcoI	CCATGG	1 cut(s)	696
NdeII	GATC	5 cut(s)	9, 202, 352, 445, 736
NlaIII	CATG	2 cut(s)	672, 700
NlaIV	GGNNCC	2 cut(s)	513, 534
PctI	GAATGC	1 cut(s)	470
PfeI	GAWTC	4 cut(s)	282, 539, 662, 718
PflMI	CCANNNNNTGG	1 cut(s)	387
PkrI	GCNGC	2 cut(s)	209, 577
PshAI	GACNNNNGTC	1 cut(s)	302
Psp124BI	GAGCTC	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	552
PspGI	CCWGG	1 cut(s)	552
PspN4I	GGNNCC	2 cut(s)	513, 534
PsrI	GAACNNNNNNTAC	2 cut(s)	88, 120
PstI	CTGCAG	1 cut(s)	93
PstNI	CAGNNNCTG	1 cut(s)	542
PsuI	RGATCY	1 cut(s)	9
RsaI	GTAC	2 cut(s)	546, 754
RsaNI	GTAC	2 cut(s)	545, 753
SacI	GAGCTC	1 cut(s)	276
SatI	GCNGC	2 cut(s)	208, 576
Sau3AI	GATC	5 cut(s)	9, 202, 352, 445, 736
ScrFI	CCNGG	1 cut(s)	554
SduI	GDGCHC	1 cut(s)	276
SfaNI	GCATC	2 cut(s)	71, 682
SfcI	CTRYAG	1 cut(s)	89
Sse9I	AATT	1 cut(s)	360
SsiI	CCGC	2 cut(s)	210, 321
SspMI	CTAG	1 cut(s)	191
SstI	GAGCTC	1 cut(s)	276
StyD4I	CCNGG	1 cut(s)	552
StyI	CCWWGG	2 cut(s)	655, 696
TaaI	ACNGT	1 cut(s)	225
TaiI	ACGT	1 cut(s)	73
TaqI	TCGA	2 cut(s)	492, 498
TaqII	GACCGA	2 cut(s)	284, 296
TasI	AATT	1 cut(s)	360
TatI	WGTACW	2 cut(s)	544, 752
TfiI	GAWTC	4 cut(s)	282, 539, 662, 718
TscAI	CASTG	3 cut(s)	98, 230, 694
TseI	GCWGC	2 cut(s)	207, 575
TspDTI	ATGAA	4 cut(s)	17, 96, 353, 657
TspGWI	ACGGA	1 cut(s)	22
TspRI	CASTG	3 cut(s)	98, 230, 694
Van91I	CCANNNNNTGG	1 cut(s)	387
XbaI	TCTAGA	1 cut(s)	190
XcmI	CCANNNNNNNNNTGG	1 cut(s)	694
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.