Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004479

Physical Location & Seq

Genomic Coordinates Reverse (-)

5150551 .. 5154052

Gene Structure 3502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G071800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGACCCATACTTCTTACCTCACAGTTGGCAAGGCTTTGAATTTTGGAGCTGGAGCGGTGCGAAGGTCATTGAACTTTCCCCACAAGTTTTTTATCAGGAGGATTCAAATGGCAAATAATAATCACACCTGTAGCCTAAGAGGTGGCAAGGAGGATTCAAGAGGTGCCTTGGTTGTTCTCGAAGGATTGGATCGTTGTGGGAAGACCACACAGTCCACTAGACTAGTTGCAAACTTGGAGAAGTTAGGGCATTCAGCTGAATTGTGGCGGTTTCCTGACAGAACTACAAGTGTTGGGCAAATGATATCTTCTTATCTTTCCAACAAATCACAACTGGATGATCATACAATCCATCTACTCTTTAGCGCCAACCGTTGGGAGAAGAGATCATTAATGGAAAGCAAATTGAAAAGTGGAATCACCCTTGTTGTTGACCGTTATTCTTATTCAGGGGTGGCCTTTTCATCTGCCAAGGGGCTTGATATTTCGTGGTGCAAGGCTCCGGAGATTGGGTTATTGGCTCCAGATCTTGTAGTGTACCTTGACATACCACCTGAAAAAGCTGCTGAAAGAGGAGGCTACGGAGGTGAGAGATATGAGCAGCTTGAGTTTCAAAAGAAGGTTGGCCAAAACTATCAGGTCCTCCGTGGTCCCACTTGGAAGATCATAGATGCTTGTTCGCCGATGGAGGACATTGAGGAACATTTGCAAGAGATGGTATTGGATTGTGTAAAAACATGCCAAGAAGGGAAACCCCTCTCATGTCTCTGGTCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004798 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006139 GO:0006220 GO:0006221 GO:0006227 GO:0006233 GO:0006235 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009041 GO:0009058 GO:0009117 GO:0009123 GO:0009132 GO:0009133 GO:0009138 GO:0009139 GO:0009141 GO:0009142 GO:0009147 GO:0009148 GO:0009165 GO:0009186 GO:0009189 GO:0009196 GO:0009197 GO:0009200 GO:0009202 GO:0009211 GO:0009212 GO:0009219 GO:0009221 GO:0009262 GO:0009263 GO:0009265 GO:0009394 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0019692 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046072 GO:0046075 GO:0046077 GO:0046385 GO:0046483 GO:0046940 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050145 GO:0055086 GO:0061458 GO:0070013 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

Thymidylate_kin

Protein Analysis

260

Amino Acids

29.03

Weight (kDa)

8.57

Isoelectric Point (pI)

39.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59440 AT5G59440 AT5G59440
fragaria_vesca	FvH4_6g52930 FvH4_6g52930 FvH4_6g52930 FvH4_6g52930
malus_domestica	MD09G1015900.v1.1 MD17G1016300.v1.1
prunus_persica	Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G301400_v2.0.a1 Prupe.3G301400_v2.0.a1
pyrus_communis	pycom111g01300 pycom17g01320
rosa_chinensis	RchiOBHm_Chr2g0174641
rosa_laevigata	RLG00000022279
rosa_multiflora	Rmu_sc0007189.1_g000008
rosa_roxburghii	Rroxscaffold_2G00077980
rosa_rugosa	Rorug02G0578500 Rorug02G0578500 Rorug02G0578500
rosa_samantha	Rh2AG659600 Rh2BG670400 Rh2CG633700 Rh2DG684100
rosa_wichuraiana	Rw2G054020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	211
AccB1I	GGYRCC	1 cut(s)	164
AccB7I	CCANNNNNTGG	1 cut(s)	375
AccBSI	CCGCTC	1 cut(s)	56
AccIII	TCCGGA	1 cut(s)	502
AciI	CCGC	2 cut(s)	56, 268
AclWI	GGATC	1 cut(s)	198
AcoI	YGGCCR	1 cut(s)	625
AcsI	RAATTY	1 cut(s)	40
AfaI	GTAC	1 cut(s)	539
AfiI	CCNNNNNNNGG	2 cut(s)	375, 509
AgsI	TTSAA	6 cut(s)	40, 73, 107, 159, 409, 614
AhlI	ACTAGT	1 cut(s)	223
AluBI	AGCT	4 cut(s)	50, 257, 563, 604
AluI	AGCT	4 cut(s)	50, 257, 563, 604
Alw26I	GTCTC	1 cut(s)	770
AlwI	GGATC	1 cut(s)	198
Aor13HI	TCCGGA	1 cut(s)	502
AoxI	GGCC	2 cut(s)	456, 625
ApeKI	GCWGC	2 cut(s)	563, 601
ApoI	RAATTY	1 cut(s)	40
AseI	ATTAAT	1 cut(s)	392
AspLEI	GCGC	1 cut(s)	368
AspS9I	GGNCC	2 cut(s)	640, 650
AsuHPI	GGTGA	2 cut(s)	412, 599
AvaII	GGWCC	2 cut(s)	640, 650
BalI	TGGCCA	1 cut(s)	627
BanI	GGYRCC	1 cut(s)	164
BbsI	GAAGAC	1 cut(s)	209
BbvI	GCAGC	2 cut(s)	550, 613
BccI	CCATC	3 cut(s)	360, 679, 709
BclI	TGATCA	1 cut(s)	340
BcoDI	GTCTC	1 cut(s)	770
BcuI	ACTAGT	1 cut(s)	223
BfaI	CTAG	2 cut(s)	219, 224
BfmI	CTRYAG	1 cut(s)	130
BfoI	RGCGCY	1 cut(s)	369
BglII	AGATCT	1 cut(s)	526
BisI	GCNGC	2 cut(s)	564, 602
BlsI	GCNGC	2 cut(s)	565, 603
Bme18I	GGWCC	2 cut(s)	640, 650
BmgT120I	GGNCC	2 cut(s)	640, 650
BmiI	GGNNCC	4 cut(s)	166, 501, 522, 652
BmsI	GCATC	1 cut(s)	661
BpiI	GAAGAC	1 cut(s)	209
BpmI	CTGGAG	2 cut(s)	72, 507
BpuEI	CTTGAG	1 cut(s)	626
BsaJI	CCNNGG	3 cut(s)	168, 471, 646
BsaWI	WCCGGW	1 cut(s)	502
BsaXI	ACNNNNNCTCC	2 cut(s)	497, 527
Bsc4I	CCNNNNNNNGG	2 cut(s)	375, 509
Bse1I	ACTGG	1 cut(s)	339
BseAI	TCCGGA	1 cut(s)	502
BseDI	CCNNGG	3 cut(s)	168, 471, 646
BseGI	GGATG	1 cut(s)	343
BseLI	CCNNNNNNNGG	2 cut(s)	375, 509
BseNI	ACTGG	1 cut(s)	339
BseRI	GAGGAG	1 cut(s)	588
BseXI	GCAGC	2 cut(s)	550, 613
BshFI	GGCC	2 cut(s)	458, 627
BshNI	GGYRCC	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	503
BslFI	GGGAC	1 cut(s)	636
BslI	CCNNNNNNNGG	2 cut(s)	375, 509
BsmAI	GTCTC	1 cut(s)	770
BsmFI	GGGAC	1 cut(s)	636
BsmI	GAATGC	1 cut(s)	250
BsnI	GGCC	2 cut(s)	458, 627
Bsp13I	TCCGGA	1 cut(s)	502
Bsp143I	GATC	5 cut(s)	190, 340, 386, 526, 663
BspACI	CCGC	2 cut(s)	56, 268
BspANI	GGCC	2 cut(s)	458, 627
BspEI	TCCGGA	1 cut(s)	502
BspLI	GGNNCC	4 cut(s)	166, 501, 522, 652
BspPI	GGATC	1 cut(s)	198
BspT107I	GGYRCC	1 cut(s)	164
BsrBI	CCGCTC	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	339
BssECI	CCNNGG	3 cut(s)	168, 471, 646
BssMI	GATC	5 cut(s)	190, 340, 386, 526, 663
BssT1I	CCWWGG	2 cut(s)	168, 471
Bst4CI	ACNGT	4 cut(s)	25, 213, 374, 437
Bst6I	CTCTTC	1 cut(s)	377
BstDEI	CTNAG	1 cut(s)	137
BstDSI	CCRYGG	1 cut(s)	646
BstF5I	GGATG	1 cut(s)	343
BstH2I	RGCGCY	1 cut(s)	369
BstHHI	GCGC	1 cut(s)	368
BstKTI	GATC	5 cut(s)	193, 343, 389, 529, 666
BstMAI	GTCTC	1 cut(s)	770
BstMBI	GATC	5 cut(s)	190, 340, 386, 526, 663
BstNSI	RCATGY	1 cut(s)	741
BstSFI	CTRYAG	1 cut(s)	130
BstV1I	GCAGC	2 cut(s)	550, 613
BstV2I	GAAGAC	1 cut(s)	209
BstX2I	RGATCY	1 cut(s)	526
BstYI	RGATCY	1 cut(s)	526
BsuRI	GGCC	2 cut(s)	458, 627
BtgI	CCRYGG	1 cut(s)	646
BtsCI	GGATG	1 cut(s)	343
CfoI	GCGC	1 cut(s)	368
Cfr13I	GGNCC	2 cut(s)	640, 650
Csp6I	GTAC	1 cut(s)	538
CviAII	CATG	2 cut(s)	738, 762
CviQI	GTAC	1 cut(s)	538
DdeI	CTNAG	1 cut(s)	137
DpnI	GATC	5 cut(s)	192, 342, 388, 528, 665
DpnII	GATC	5 cut(s)	190, 340, 386, 526, 663
DrdI	GACNNNNNNGTC	1 cut(s)	211
DseDI	GACNNNNNNGTC	1 cut(s)	211
EaeI	YGGCCR	1 cut(s)	625
Eam1104I	CTCTTC	1 cut(s)	377
EarI	CTCTTC	1 cut(s)	377
Eco130I	CCWWGG	2 cut(s)	168, 471
Eco32I	GATATC	1 cut(s)	306
Eco47I	GGWCC	2 cut(s)	640, 650
EcoO109I	RGGNCCY	1 cut(s)	640
EcoRV	GATATC	1 cut(s)	306
EcoT14I	CCWWGG	2 cut(s)	168, 471
ErhI	CCWWGG	2 cut(s)	168, 471
FaeI	CATG	2 cut(s)	741, 765
FaiI	YATR	7 cut(s)	9, 345, 548, 597, 668, 739, 763
FaqI	GGGAC	1 cut(s)	636
FatI	CATG	2 cut(s)	737, 761
FbaI	TGATCA	1 cut(s)	340
Fnu4HI	GCNGC	2 cut(s)	564, 602
FokI	GGATG	1 cut(s)	350
Fsp4HI	GCNGC	2 cut(s)	564, 602
FspBI	CTAG	2 cut(s)	219, 224
GlaI	GCGC	1 cut(s)	367
GluI	GCNGC	2 cut(s)	564, 602
GsuI	CTGGAG	2 cut(s)	72, 507
HaeII	RGCGCY	1 cut(s)	369
HaeIII	GGCC	2 cut(s)	458, 627
HapII	CCGG	1 cut(s)	503
HhaI	GCGC	1 cut(s)	368
Hin1II	CATG	2 cut(s)	741, 765
Hin6I	GCGC	1 cut(s)	366
HinP1I	GCGC	1 cut(s)	366
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HinfI	GANTC	3 cut(s)	103, 155, 417
HpaII	CCGG	1 cut(s)	503
HphI	GGTGA	2 cut(s)	412, 599
Hpy166II	GTNNAC	3 cut(s)	216, 433, 538
Hpy188III	TCNNGA	6 cut(s)	97, 159, 179, 275, 503, 524
Hpy8I	GTNNAC	3 cut(s)	216, 433, 538
HpyAV	CCTTC	4 cut(s)	57, 176, 613, 740
HpyCH4III	ACNGT	4 cut(s)	25, 213, 374, 437
HpyCH4V	TGCA	3 cut(s)	230, 495, 709
HpyF3I	CTNAG	1 cut(s)	137
Hsp92II	CATG	2 cut(s)	741, 765
HspAI	GCGC	1 cut(s)	366
Kpn2I	TCCGGA	1 cut(s)	502
Ksp22I	TGATCA	1 cut(s)	340
Kzo9I	GATC	5 cut(s)	190, 340, 386, 526, 663
LmnI	GCTCC	4 cut(s)	47, 53, 505, 526
Lsp1109I	GCAGC	2 cut(s)	550, 613
LweI	GCATC	1 cut(s)	661
MaeI	CTAG	2 cut(s)	219, 224
MalI	GATC	5 cut(s)	192, 342, 388, 528, 665
MbiI	CCGCTC	1 cut(s)	56
MboI	GATC	5 cut(s)	190, 340, 386, 526, 663
MboII	GAAGA	4 cut(s)	214, 300, 394, 673
MflI	RGATCY	1 cut(s)	526
MlsI	TGGCCA	1 cut(s)	627
MluCI	AATT	3 cut(s)	40, 260, 404
MluNI	TGGCCA	1 cut(s)	627
MmeI	TCCRAC	1 cut(s)	345
Mox20I	TGGCCA	1 cut(s)	627
MroI	TCCGGA	1 cut(s)	502
MscI	TGGCCA	1 cut(s)	627
MseI	TTAA	2 cut(s)	392, 778
Msp20I	TGGCCA	1 cut(s)	627
MspA1I	CMGCKG	1 cut(s)	257
MspI	CCGG	1 cut(s)	503
Mva1269I	GAATGC	1 cut(s)	250
NdeII	GATC	5 cut(s)	190, 340, 386, 526, 663
NlaIII	CATG	2 cut(s)	741, 765
NlaIV	GGNNCC	4 cut(s)	166, 501, 522, 652
NspI	RCATGY	1 cut(s)	741
PctI	GAATGC	1 cut(s)	250
PfeI	GAWTC	3 cut(s)	103, 155, 417
PflMI	CCANNNNNTGG	1 cut(s)	375
PkrI	GCNGC	2 cut(s)	565, 603
PpuMI	RGGWCCY	1 cut(s)	640
PshBI	ATTAAT	1 cut(s)	392
Psp5II	RGGWCCY	1 cut(s)	640
PspN4I	GGNNCC	4 cut(s)	166, 501, 522, 652
PspPI	GGNCC	2 cut(s)	640, 650
PspPPI	RGGWCCY	1 cut(s)	640
PsuI	RGATCY	1 cut(s)	526
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	1 cut(s)	539
RsaNI	GTAC	1 cut(s)	538
SaqAI	TTAA	2 cut(s)	392, 778
SatI	GCNGC	2 cut(s)	564, 602
Sau3AI	GATC	5 cut(s)	190, 340, 386, 526, 663
Sau96I	GGNCC	2 cut(s)	640, 650
SfaNI	GCATC	1 cut(s)	661
SfcI	CTRYAG	1 cut(s)	130
SinI	GGWCC	2 cut(s)	640, 650
SmlI	CTYRAG	1 cut(s)	605
SmoI	CTYRAG	1 cut(s)	605
SpeI	ACTAGT	1 cut(s)	223
Sse9I	AATT	3 cut(s)	40, 260, 404
SsiI	CCGC	2 cut(s)	56, 268
SspMI	CTAG	2 cut(s)	219, 224
StyI	CCWWGG	2 cut(s)	168, 471
TaaI	ACNGT	4 cut(s)	25, 213, 374, 437
TaqI	TCGA	1 cut(s)	180
TasI	AATT	3 cut(s)	40, 260, 404
TfiI	GAWTC	3 cut(s)	103, 155, 417
Tru1I	TTAA	2 cut(s)	392, 778
Tru9I	TTAA	2 cut(s)	392, 778
TseI	GCWGC	2 cut(s)	563, 601
TspDTI	ATGAA	1 cut(s)	453
TspGWI	ACGGA	2 cut(s)	597, 635
Van91I	CCANNNNNTGG	1 cut(s)	375
VpaK11BI	GGWCC	2 cut(s)	640, 650
VspI	ATTAAT	1 cut(s)	392
XapI	RAATTY	1 cut(s)	40
XceI	RCATGY	1 cut(s)	741
XspI	CTAG	2 cut(s)	219, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.