Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004479

Physical Location & Seq

Genomic Coordinates Forward (+)

38861837 .. 38865738

Gene Structure 3902 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g52930.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGAGCCATGCTTCTTATCTCACAGTTTGCAAGGCTTTGAATTTTGGAGCGAGACCGCTGCGAAGATCATCATATTTTCCTTTCAACTTTCCCCAAAAGGCTTTTTTTAGGCGGATTCAGATGGCAGATAGTAGTCATGATTGTAGCCTAAGAAGTAGCAAGGAGGATTCAAGAGGTGCGTTGGTTGTTTTGGAAGGCTTGGATCGTTGCGGGAAGACAACACAGTCTAGTAGACTAGTTAAACACTTGGAGAGTTTAGGGTATTCAGCTGAATTATGGAGGTATCCTGACAGGACTACAAGTGTTGGGCAAATGATTTCTTCTTATCTTTCAAACAAATCGCAACTGGATGATCGTACTATCCATCTTCTTTTTAGTGCCAACCGGTGGGAGAAGAGATCATTGATGGAAAGTAAATTGAAAAGTGGAACCACTCTTGTCATTGACCGGTATTCTTATTCTGGGGTGGCATTCTCATCTGCCAAAGGACTGGACATTGAATGGTGTAAGGCTCCTGAGATTGGGTTGTTGGCCCCAGATGTTGTTCTGTACCTTGACATACCACCTGAGAAAGCTGCGGAAAGAGGGGGATATGGAGGTGAGAGATATGAGCAGCTTGAATTTCAGAAGAAAGTTGGCCAAAGATACAAGGACCTCCACAGTGCCAATTGGAAGATCATAGATGCGTGTTCAACCATGGAGGATGTTGAGAAACAGTTGCGAGAGATAGTATTGGGTTATGTAAAGACATGCCAGGAAGGAAAACCCCTCTCATGTCTCTGGTCTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004798 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006139 GO:0006220 GO:0006221 GO:0006227 GO:0006233 GO:0006235 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009041 GO:0009058 GO:0009117 GO:0009123 GO:0009132 GO:0009133 GO:0009138 GO:0009139 GO:0009141 GO:0009142 GO:0009147 GO:0009148 GO:0009165 GO:0009186 GO:0009189 GO:0009196 GO:0009197 GO:0009200 GO:0009202 GO:0009211 GO:0009212 GO:0009219 GO:0009221 GO:0009262 GO:0009263 GO:0009265 GO:0009394 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0019692 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046072 GO:0046075 GO:0046077 GO:0046385 GO:0046483 GO:0046940 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050145 GO:0055086 GO:0061458 GO:0070013 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

Thymidylate_kin

Protein Analysis

264

Amino Acids

29.85

Weight (kDa)

8.92

Isoelectric Point (pI)

48.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thymidylate_kin	PF02223	64 - 239	7.6e-46	Thymidylate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59440 AT5G59440 AT5G59440
fragaria_vesca	FvH4_6g52930 FvH4_6g52930 FvH4_6g52930 FvH4_6g52930
malus_domestica	MD09G1015900.v1.1 MD17G1016300.v1.1
prunus_persica	Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G301400_v2.0.a1 Prupe.3G301400_v2.0.a1
pyrus_communis	pycom111g01300 pycom17g01320
rosa_chinensis	RchiOBHm_Chr2g0174641
rosa_laevigata	RLG00000022279
rosa_multiflora	Rmu_sc0007189.1_g000008
rosa_roxburghii	Rroxscaffold_2G00077980
rosa_rugosa	Rorug02G0578500 Rorug02G0578500 Rorug02G0578500
rosa_samantha	Rh2AG659600 Rh2BG670400 Rh2CG633700 Rh2DG684100
rosa_wichuraiana	Rw2G054020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	223
AccB7I	CCANNNNNTGG	1 cut(s)	387
AccI	GTMKAC	1 cut(s)	232
AciI	CCGC	4 cut(s)	56, 112, 210, 578
AclWI	GGATC	1 cut(s)	210
AcoI	YGGCCR	1 cut(s)	637
AcsI	RAATTY	2 cut(s)	40, 620
AfaI	GTAC	2 cut(s)	358, 551
AfiI	CCNNNNNNNGG	2 cut(s)	387, 521
AgeI	ACCGGT	2 cut(s)	384, 447
AgsI	TTSAA	8 cut(s)	40, 85, 171, 333, 421, 500, 620, 693
AhlI	ACTAGT	1 cut(s)	235
AjnI	CCWGG	1 cut(s)	753
AluBI	AGCT	3 cut(s)	269, 575, 616
AluI	AGCT	3 cut(s)	269, 575, 616
Alw26I	GTCTC	2 cut(s)	46, 782
AlwI	GGATC	1 cut(s)	210
AoxI	GGCC	2 cut(s)	531, 637
ApeKI	GCWGC	3 cut(s)	58, 575, 613
ApoI	RAATTY	2 cut(s)	40, 620
AsiGI	ACCGGT	2 cut(s)	384, 447
AspS9I	GGNCC	2 cut(s)	532, 652
AsuHPI	GGTGA	1 cut(s)	611
AvaII	GGWCC	1 cut(s)	652
BalI	TGGCCA	1 cut(s)	639
BbsI	GAAGAC	1 cut(s)	221
BbvI	GCAGC	3 cut(s)	45, 562, 625
BccI	CCATC	3 cut(s)	115, 372, 400
BcgI	CGANNNNNNTGC	2 cut(s)	40, 74
BciT130I	CCWGG	1 cut(s)	755
BciVI	GTATCC	1 cut(s)	294
BcoDI	GTCTC	2 cut(s)	46, 782
BcuI	ACTAGT	1 cut(s)	235
BfaI	CTAG	3 cut(s)	228, 236, 790
BfuI	GTATCC	1 cut(s)	294
BisI	GCNGC	3 cut(s)	59, 576, 614
BlsI	GCNGC	3 cut(s)	60, 577, 615
Bme1390I	CCNGG	1 cut(s)	755
Bme18I	GGWCC	1 cut(s)	652
BmgT120I	GGNCC	2 cut(s)	532, 652
BmiI	GGNNCC	3 cut(s)	430, 513, 534
BmrFI	CCNGG	1 cut(s)	755
BmsI	GCATC	1 cut(s)	673
BpiI	GAAGAC	1 cut(s)	221
BsaI	GGTCTC	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	696
BsaWI	WCCGGW	2 cut(s)	384, 447
Bsc4I	CCNNNNNNNGG	2 cut(s)	387, 521
Bse118I	RCCGGY	2 cut(s)	384, 447
Bse1I	ACTGG	2 cut(s)	351, 495
BseBI	CCWGG	1 cut(s)	755
BseDI	CCNNGG	1 cut(s)	696
BseGI	GGATG	2 cut(s)	355, 709
BseLI	CCNNNNNNNGG	2 cut(s)	387, 521
BseMII	CTCAG	2 cut(s)	507, 558
BseNI	ACTGG	2 cut(s)	351, 495
BseXI	GCAGC	3 cut(s)	45, 562, 625
BshFI	GGCC	2 cut(s)	533, 639
BshTI	ACCGGT	2 cut(s)	384, 447
BsiSI	CCGG	2 cut(s)	385, 448
BslI	CCNNNNNNNGG	2 cut(s)	387, 521
BsmAI	GTCTC	2 cut(s)	46, 782
BsmI	GAATGC	1 cut(s)	470
BsnI	GGCC	2 cut(s)	533, 639
Bso31I	GGTCTC	1 cut(s)	46
Bsp143I	GATC	5 cut(s)	65, 202, 352, 398, 675
Bsp19I	CCATGG	1 cut(s)	696
BspACI	CCGC	4 cut(s)	56, 112, 210, 578
BspANI	GGCC	2 cut(s)	533, 639
BspCNI	CTCAG	2 cut(s)	508, 559
BspHI	TCATGA	1 cut(s)	136
BspLI	GGNNCC	3 cut(s)	430, 513, 534
BspPI	GGATC	1 cut(s)	210
BspTNI	GGTCTC	1 cut(s)	46
BsrFI	RCCGGY	2 cut(s)	384, 447
BsrI	ACTGG	2 cut(s)	351, 495
BssAI	RCCGGY	2 cut(s)	384, 447
BssECI	CCNNGG	1 cut(s)	696
BssMI	GATC	5 cut(s)	65, 202, 352, 398, 675
BssT1I	CCWWGG	1 cut(s)	696
Bst2UI	CCWGG	1 cut(s)	755
Bst4CI	ACNGT	4 cut(s)	25, 225, 662, 717
Bst6I	CTCTTC	1 cut(s)	389
BstDEI	CTNAG	3 cut(s)	149, 516, 567
BstDSI	CCRYGG	1 cut(s)	696
BstF5I	GGATG	2 cut(s)	355, 709
BstKTI	GATC	5 cut(s)	68, 205, 355, 401, 678
BstMAI	GTCTC	2 cut(s)	46, 782
BstMBI	GATC	5 cut(s)	65, 202, 352, 398, 675
BstNI	CCWGG	1 cut(s)	755
BstNSI	RCATGY	1 cut(s)	753
BstSCI	CCNGG	1 cut(s)	753
BstV1I	GCAGC	3 cut(s)	45, 562, 625
BstV2I	GAAGAC	1 cut(s)	221
BstXI	CCANNNNNNTGG	1 cut(s)	490
BsuI	GTATCC	1 cut(s)	294
BsuRI	GGCC	2 cut(s)	533, 639
BtgI	CCRYGG	1 cut(s)	696
BtsCI	GGATG	2 cut(s)	355, 709
BtsIMutI	CAGTG	1 cut(s)	667
CciI	TCATGA	1 cut(s)	136
Cfr10I	RCCGGY	2 cut(s)	384, 447
Cfr13I	GGNCC	2 cut(s)	532, 652
Csp6I	GTAC	2 cut(s)	357, 550
CspAI	ACCGGT	2 cut(s)	384, 447
CviAII	CATG	5 cut(s)	8, 137, 697, 750, 774
CviQI	GTAC	2 cut(s)	357, 550
DdeI	CTNAG	3 cut(s)	149, 516, 567
DpnI	GATC	5 cut(s)	67, 204, 354, 400, 677
DpnII	GATC	5 cut(s)	65, 202, 352, 398, 675
DrdI	GACNNNNNNGTC	1 cut(s)	223
DseDI	GACNNNNNNGTC	1 cut(s)	223
EaeI	YGGCCR	1 cut(s)	637
Eam1104I	CTCTTC	1 cut(s)	389
EarI	CTCTTC	1 cut(s)	389
EciI	GGCGGA	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	696
Eco31I	GGTCTC	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	652
EcoO109I	RGGNCCY	1 cut(s)	652
EcoRII	CCWGG	1 cut(s)	753
EcoT14I	CCWWGG	1 cut(s)	696
ErhI	CCWWGG	1 cut(s)	696
FaeI	CATG	5 cut(s)	11, 140, 700, 753, 777
FatI	CATG	5 cut(s)	7, 136, 696, 749, 773
FauI	CCCGC	1 cut(s)	203
FblI	GTMKAC	1 cut(s)	232
Fnu4HI	GCNGC	3 cut(s)	59, 576, 614
FokI	GGATG	2 cut(s)	362, 716
Fsp4HI	GCNGC	3 cut(s)	59, 576, 614
FspBI	CTAG	3 cut(s)	228, 236, 790
GluI	GCNGC	3 cut(s)	59, 576, 614
HaeIII	GGCC	2 cut(s)	533, 639
HapII	CCGG	2 cut(s)	385, 448
Hin1II	CATG	5 cut(s)	11, 140, 700, 753, 777
HinfI	GANTC	2 cut(s)	115, 167
HpaII	CCGG	2 cut(s)	385, 448
HphI	GGTGA	1 cut(s)	611
Hpy166II	GTNNAC	1 cut(s)	233
Hpy188I	TCNGA	2 cut(s)	120, 627
Hpy188III	TCNNGA	4 cut(s)	137, 171, 287, 515
Hpy8I	GTNNAC	1 cut(s)	233
HpyAV	CCTTC	2 cut(s)	188, 752
HpyCH4III	ACNGT	4 cut(s)	25, 225, 662, 717
HpyCH4V	TGCA	1 cut(s)	30
HpyF3I	CTNAG	3 cut(s)	149, 516, 567
Hsp92II	CATG	5 cut(s)	11, 140, 700, 753, 777
Kzo9I	GATC	5 cut(s)	65, 202, 352, 398, 675
LmnI	GCTCC	2 cut(s)	47, 517
Lsp1109I	GCAGC	3 cut(s)	45, 562, 625
LweI	GCATC	1 cut(s)	673
MaeI	CTAG	3 cut(s)	228, 236, 790
MalI	GATC	5 cut(s)	67, 204, 354, 400, 677
MboI	GATC	5 cut(s)	65, 202, 352, 398, 675
MboII	GAAGA	7 cut(s)	75, 226, 312, 359, 406, 640, 685
MfeI	CAATTG	1 cut(s)	667
MlsI	TGGCCA	1 cut(s)	639
MluCI	AATT	5 cut(s)	40, 272, 416, 620, 667
MluNI	TGGCCA	1 cut(s)	639
MnlI	CCTC	8 cut(s)	157, 167, 273, 578, 590, 665, 694, 779
Mox20I	TGGCCA	1 cut(s)	639
MscI	TGGCCA	1 cut(s)	639
MseI	TTAA	1 cut(s)	240
Msp20I	TGGCCA	1 cut(s)	639
MspA1I	CMGCKG	2 cut(s)	58, 269
MspI	CCGG	2 cut(s)	385, 448
MspR9I	CCNGG	1 cut(s)	755
MunI	CAATTG	1 cut(s)	667
Mva1269I	GAATGC	1 cut(s)	470
MvaI	CCWGG	1 cut(s)	755
NcoI	CCATGG	1 cut(s)	696
NdeII	GATC	5 cut(s)	65, 202, 352, 398, 675
NlaIII	CATG	5 cut(s)	11, 140, 700, 753, 777
NlaIV	GGNNCC	3 cut(s)	430, 513, 534
NspI	RCATGY	1 cut(s)	753
PagI	TCATGA	1 cut(s)	136
PctI	GAATGC	1 cut(s)	470
PfeI	GAWTC	2 cut(s)	115, 167
PflMI	CCANNNNNTGG	1 cut(s)	387
PinAI	ACCGGT	2 cut(s)	384, 447
PkrI	GCNGC	3 cut(s)	60, 577, 615
PpuMI	RGGWCCY	1 cut(s)	652
Psp5II	RGGWCCY	1 cut(s)	652
Psp6I	CCWGG	1 cut(s)	753
PspGI	CCWGG	1 cut(s)	753
PspN4I	GGNNCC	3 cut(s)	430, 513, 534
PspPI	GGNCC	2 cut(s)	532, 652
PspPPI	RGGWCCY	1 cut(s)	652
PvuII	CAGCTG	1 cut(s)	269
RsaI	GTAC	2 cut(s)	358, 551
RsaNI	GTAC	2 cut(s)	357, 550
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	3 cut(s)	59, 576, 614
Sau3AI	GATC	5 cut(s)	65, 202, 352, 398, 675
Sau96I	GGNCC	2 cut(s)	532, 652
ScrFI	CCNGG	1 cut(s)	755
SetI	ASST	9 cut(s)	178, 271, 284, 555, 568, 577, 601, 618, 657
SfaNI	GCATC	1 cut(s)	673
SinI	GGWCC	1 cut(s)	652
SpeI	ACTAGT	1 cut(s)	235
Sse9I	AATT	5 cut(s)	40, 272, 416, 620, 667
SsiI	CCGC	4 cut(s)	56, 112, 210, 578
SspMI	CTAG	3 cut(s)	228, 236, 790
StyD4I	CCNGG	1 cut(s)	753
StyI	CCWWGG	1 cut(s)	696
TaaI	ACNGT	4 cut(s)	25, 225, 662, 717
TasI	AATT	5 cut(s)	40, 272, 416, 620, 667
TfiI	GAWTC	2 cut(s)	115, 167
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	1 cut(s)	667
TseI	GCWGC	3 cut(s)	58, 575, 613
TspRI	CASTG	1 cut(s)	667
Van91I	CCANNNNNTGG	1 cut(s)	387
VpaK11BI	GGWCC	1 cut(s)	652
XapI	RAATTY	2 cut(s)	40, 620
XceI	RCATGY	1 cut(s)	753
XmiI	GTMKAC	1 cut(s)	232
XspI	CTAG	3 cut(s)	228, 236, 790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.