Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004479

Physical Location & Seq

Genomic Coordinates Forward (+)

87166385 .. 87170121

Gene Structure 3737 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54178

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCAGATAATAGTCACAACTGTAGCCTAAGAGGCAAGGAGGATTCAAGAGGTGCATTGGTTGTTTTGGAAGGCTTGGATCGTTGTGGGAAGACTACACAGTCTACCAGACTAGTAAAACACTTAGAAAGTTTAGGGTATTCAACGGAATTATGGAGGTATCCTGACAGGACTACAAGTGTTGGGCAAATGATATCTTCTTATCTTTCGAACAAATCACAACTGGATGATCGTACTATCCATCTTCTCTTCAGTGCCAACCGGTGGGAGAAGAGATCATTGATGGAAACTAAATTGAAAAGTGGAACCACTCTTGTCGTTGACCGGTATTCTTATTCTGGGGTGGCTTTCTCATCCGCCAAAGGACTGGACATGGAATGGTGTAAGGCTCCTGAGATTGGGTTGTTGGCTCCAGATGTTGTTCTGTACCTTGACATACCACCTGAGAAAGCTGCAGAAAGAGGGGGCTATGGAGGTGAGAGATATGAGCAGCTTGAATTTCAGAAGAAAGTTGGCCAAAGATATAAGGACCTCTGCAGTGCCAATTGGAAGGTCATAGATGCTTGTTCAACCATGGAGGAAGTTGAGAAGCAGTTGCAAGAGATAGTATTGGATTGTGTAAAGACATGCCAAGAAGGAAAACCCCTCTCATGTCTCTGGTCCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004798 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006139 GO:0006220 GO:0006221 GO:0006227 GO:0006233 GO:0006235 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009041 GO:0009058 GO:0009117 GO:0009123 GO:0009132 GO:0009133 GO:0009138 GO:0009139 GO:0009141 GO:0009142 GO:0009147 GO:0009148 GO:0009165 GO:0009186 GO:0009189 GO:0009196 GO:0009197 GO:0009200 GO:0009202 GO:0009211 GO:0009212 GO:0009219 GO:0009221 GO:0009262 GO:0009263 GO:0009265 GO:0009394 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0019692 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046072 GO:0046075 GO:0046077 GO:0046385 GO:0046483 GO:0046940 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050145 GO:0055086 GO:0061458 GO:0070013 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

Thymidylate_kin

Protein Analysis

222

Amino Acids

25.02

Weight (kDa)

6.34

Isoelectric Point (pI)

35.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thymidylate_kin	PF02223	23 - 198	4.8e-47	Thymidylate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59440 AT5G59440 AT5G59440
fragaria_vesca	FvH4_6g52930 FvH4_6g52930 FvH4_6g52930 FvH4_6g52930
malus_domestica	MD09G1015900.v1.1 MD17G1016300.v1.1
prunus_persica	Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G301400_v2.0.a1 Prupe.3G301400_v2.0.a1
pyrus_communis	pycom111g01300 pycom17g01320
rosa_chinensis	RchiOBHm_Chr2g0174641
rosa_laevigata	RLG00000022279
rosa_multiflora	Rmu_sc0007189.1_g000008
rosa_roxburghii	Rroxscaffold_2G00077980
rosa_rugosa	Rorug02G0578500 Rorug02G0578500 Rorug02G0578500
rosa_samantha	Rh2AG659600 Rh2BG670400 Rh2CG633700 Rh2DG684100
rosa_wichuraiana	Rw2G054020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	100
AccB7I	CCANNNNNTGG	1 cut(s)	264
AccI	GTMKAC	1 cut(s)	104
AciI	CCGC	1 cut(s)	357
AclWI	GGATC	1 cut(s)	87
AcoI	YGGCCR	1 cut(s)	514
AcsI	RAATTY	1 cut(s)	497
AcuI	CTGAAG	1 cut(s)	235
AfaI	GTAC	2 cut(s)	235, 428
AfiI	CCNNNNNNNGG	2 cut(s)	264, 398
AgeI	ACCGGT	2 cut(s)	261, 324
AgsI	TTSAA	5 cut(s)	48, 144, 298, 497, 570
AhlI	ACTAGT	1 cut(s)	112
AluBI	AGCT	2 cut(s)	452, 493
AluI	AGCT	2 cut(s)	452, 493
Alw26I	GTCTC	1 cut(s)	659
AlwI	GGATC	1 cut(s)	87
AoxI	GGCC	1 cut(s)	514
ApeKI	GCWGC	2 cut(s)	452, 490
ApoI	RAATTY	1 cut(s)	497
AsiGI	ACCGGT	2 cut(s)	261, 324
AspS9I	GGNCC	2 cut(s)	529, 660
AsuHPI	GGTGA	1 cut(s)	488
AsuII	TTCGAA	1 cut(s)	209
AvaII	GGWCC	2 cut(s)	529, 660
BalI	TGGCCA	1 cut(s)	516
BbsI	GAAGAC	1 cut(s)	98
BbvI	GCAGC	2 cut(s)	439, 502
BccI	CCATC	2 cut(s)	249, 277
BciVI	GTATCC	1 cut(s)	171
BcoDI	GTCTC	1 cut(s)	659
BcuI	ACTAGT	1 cut(s)	112
BfaI	CTAG	1 cut(s)	113
BfmI	CTRYAG	3 cut(s)	22, 453, 535
BfuI	GTATCC	1 cut(s)	171
BglI	GCCNNNNNGGC	1 cut(s)	33
BisI	GCNGC	2 cut(s)	453, 491
BlsI	GCNGC	2 cut(s)	454, 492
Bme18I	GGWCC	2 cut(s)	529, 660
BmgT120I	GGNCC	2 cut(s)	529, 660
BmiI	GGNNCC	3 cut(s)	307, 390, 411
BmsI	GCATC	1 cut(s)	550
BpiI	GAAGAC	1 cut(s)	98
BpmI	CTGGAG	1 cut(s)	396
Bpu14I	TTCGAA	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	573
BsaWI	WCCGGW	2 cut(s)	261, 324
Bsc4I	CCNNNNNNNGG	2 cut(s)	264, 398
Bse118I	RCCGGY	2 cut(s)	261, 324
Bse1I	ACTGG	2 cut(s)	228, 372
BseDI	CCNNGG	1 cut(s)	573
BseGI	GGATG	2 cut(s)	232, 353
BseLI	CCNNNNNNNGG	2 cut(s)	264, 398
BseMII	CTCAG	2 cut(s)	384, 435
BseNI	ACTGG	2 cut(s)	228, 372
BseXI	GCAGC	2 cut(s)	439, 502
BshFI	GGCC	1 cut(s)	516
BshTI	ACCGGT	2 cut(s)	261, 324
BsiSI	CCGG	2 cut(s)	262, 325
BslI	CCNNNNNNNGG	2 cut(s)	264, 398
BsmAI	GTCTC	1 cut(s)	659
BsnI	GGCC	1 cut(s)	516
Bsp119I	TTCGAA	1 cut(s)	209
Bsp143I	GATC	3 cut(s)	79, 229, 275
Bsp19I	CCATGG	1 cut(s)	573
BspACI	CCGC	1 cut(s)	357
BspANI	GGCC	1 cut(s)	516
BspCNI	CTCAG	2 cut(s)	385, 436
BspLI	GGNNCC	3 cut(s)	307, 390, 411
BspMAI	CTGCAG	2 cut(s)	457, 539
BspPI	GGATC	1 cut(s)	87
BspT104I	TTCGAA	1 cut(s)	209
BsrFI	RCCGGY	2 cut(s)	261, 324
BsrI	ACTGG	2 cut(s)	228, 372
BssAI	RCCGGY	2 cut(s)	261, 324
BssECI	CCNNGG	1 cut(s)	573
BssMI	GATC	3 cut(s)	79, 229, 275
BssT1I	CCWWGG	1 cut(s)	573
Bst4CI	ACNGT	2 cut(s)	23, 102
Bst6I	CTCTTC	2 cut(s)	254, 266
BstBI	TTCGAA	1 cut(s)	209
BstDEI	CTNAG	4 cut(s)	29, 124, 393, 444
BstDSI	CCRYGG	1 cut(s)	573
BstF5I	GGATG	2 cut(s)	232, 353
BstKTI	GATC	3 cut(s)	82, 232, 278
BstMAI	GTCTC	1 cut(s)	659
BstMBI	GATC	3 cut(s)	79, 229, 275
BstMWI	GCNNNNNNNGC	1 cut(s)	33
BstNSI	RCATGY	1 cut(s)	630
BstSFI	CTRYAG	3 cut(s)	22, 453, 535
BstV1I	GCAGC	2 cut(s)	439, 502
BstV2I	GAAGAC	1 cut(s)	98
BstXI	CCANNNNNNTGG	1 cut(s)	367
BsuI	GTATCC	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	516
BtgI	CCRYGG	1 cut(s)	573
BtsCI	GGATG	2 cut(s)	232, 353
BtsI	GCAGTG	1 cut(s)	544
BtsIMutI	CAGTG	2 cut(s)	259, 544
Cfr10I	RCCGGY	2 cut(s)	261, 324
Cfr13I	GGNCC	2 cut(s)	529, 660
Csp6I	GTAC	2 cut(s)	234, 427
CspAI	ACCGGT	2 cut(s)	261, 324
CviAII	CATG	4 cut(s)	373, 574, 627, 651
CviJI	RGCY	9 cut(s)	27, 75, 347, 389, 410, 452, 468, 493, 516
CviKI_1	RGCY	9 cut(s)	27, 75, 347, 389, 410, 452, 468, 493, 516
CviQI	GTAC	2 cut(s)	234, 427
DdeI	CTNAG	4 cut(s)	29, 124, 393, 444
DpnI	GATC	3 cut(s)	81, 231, 277
DpnII	GATC	3 cut(s)	79, 229, 275
DrdI	GACNNNNNNGTC	1 cut(s)	100
DseDI	GACNNNNNNGTC	1 cut(s)	100
EaeI	YGGCCR	1 cut(s)	514
Eam1104I	CTCTTC	2 cut(s)	254, 266
EarI	CTCTTC	2 cut(s)	254, 266
EciI	GGCGGA	1 cut(s)	346
Eco130I	CCWWGG	1 cut(s)	573
Eco32I	GATATC	1 cut(s)	195
Eco47I	GGWCC	2 cut(s)	529, 660
Eco57I	CTGAAG	1 cut(s)	235
EcoO109I	RGGNCCY	1 cut(s)	529
EcoRV	GATATC	1 cut(s)	195
EcoT14I	CCWWGG	1 cut(s)	573
ErhI	CCWWGG	1 cut(s)	573
FaeI	CATG	4 cut(s)	376, 577, 630, 654
FatI	CATG	4 cut(s)	372, 573, 626, 650
FblI	GTMKAC	1 cut(s)	104
Fnu4HI	GCNGC	2 cut(s)	453, 491
FokI	GGATG	2 cut(s)	239, 340
Fsp4HI	GCNGC	2 cut(s)	453, 491
FspBI	CTAG	1 cut(s)	113
GluI	GCNGC	2 cut(s)	453, 491
GsuI	CTGGAG	1 cut(s)	396
HaeIII	GGCC	1 cut(s)	516
HapII	CCGG	2 cut(s)	262, 325
Hin1II	CATG	4 cut(s)	376, 577, 630, 654
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HinfI	GANTC	1 cut(s)	44
HpaII	CCGG	2 cut(s)	262, 325
HphI	GGTGA	1 cut(s)	488
Hpy166II	GTNNAC	2 cut(s)	105, 322
Hpy188I	TCNGA	1 cut(s)	504
Hpy188III	TCNNGA	4 cut(s)	48, 164, 392, 413
Hpy8I	GTNNAC	2 cut(s)	105, 322
HpyAV	CCTTC	3 cut(s)	65, 544, 629
HpyCH4III	ACNGT	2 cut(s)	23, 102
HpyCH4V	TGCA	4 cut(s)	56, 455, 537, 598
HpyF10VI	GCNNNNNNNGC	1 cut(s)	33
HpyF3I	CTNAG	4 cut(s)	29, 124, 393, 444
Hsp92II	CATG	4 cut(s)	376, 577, 630, 654
Kzo9I	GATC	3 cut(s)	79, 229, 275
LmnI	GCTCC	2 cut(s)	394, 415
Lsp1109I	GCAGC	2 cut(s)	439, 502
LweI	GCATC	1 cut(s)	550
MaeI	CTAG	1 cut(s)	113
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	3 cut(s)	81, 231, 277
MboI	GATC	3 cut(s)	79, 229, 275
MboII	GAAGA	6 cut(s)	103, 189, 236, 241, 283, 517
MfeI	CAATTG	1 cut(s)	544
MlsI	TGGCCA	1 cut(s)	516
MluCI	AATT	4 cut(s)	149, 293, 497, 544
MluNI	TGGCCA	1 cut(s)	516
MnlI	CCTC	9 cut(s)	26, 34, 44, 150, 455, 467, 542, 571, 656
Mox20I	TGGCCA	1 cut(s)	516
MscI	TGGCCA	1 cut(s)	516
MseI	TTAA	1 cut(s)	667
Msp20I	TGGCCA	1 cut(s)	516
MspI	CCGG	2 cut(s)	262, 325
MunI	CAATTG	1 cut(s)	544
MwoI	GCNNNNNNNGC	1 cut(s)	33
NcoI	CCATGG	1 cut(s)	573
NdeII	GATC	3 cut(s)	79, 229, 275
NlaIII	CATG	4 cut(s)	376, 577, 630, 654
NlaIV	GGNNCC	3 cut(s)	307, 390, 411
NmuCI	GTSAC	1 cut(s)	14
NspI	RCATGY	1 cut(s)	630
NspV	TTCGAA	1 cut(s)	209
PfeI	GAWTC	1 cut(s)	44
PflMI	CCANNNNNTGG	1 cut(s)	264
PinAI	ACCGGT	2 cut(s)	261, 324
PkrI	GCNGC	2 cut(s)	454, 492
PpuMI	RGGWCCY	1 cut(s)	529
Psp5II	RGGWCCY	1 cut(s)	529
PspN4I	GGNNCC	3 cut(s)	307, 390, 411
PspPI	GGNCC	2 cut(s)	529, 660
PspPPI	RGGWCCY	1 cut(s)	529
PstI	CTGCAG	2 cut(s)	457, 539
RsaI	GTAC	2 cut(s)	235, 428
RsaNI	GTAC	2 cut(s)	234, 427
SaqAI	TTAA	1 cut(s)	667
SatI	GCNGC	2 cut(s)	453, 491
Sau3AI	GATC	3 cut(s)	79, 229, 275
Sau96I	GGNCC	2 cut(s)	529, 660
SetI	ASST	9 cut(s)	55, 161, 432, 445, 454, 478, 495, 534, 555
SfaNI	GCATC	1 cut(s)	550
SfcI	CTRYAG	3 cut(s)	22, 453, 535
SfuI	TTCGAA	1 cut(s)	209
SinI	GGWCC	2 cut(s)	529, 660
SpeI	ACTAGT	1 cut(s)	112
Sse9I	AATT	4 cut(s)	149, 293, 497, 544
SsiI	CCGC	1 cut(s)	357
SspMI	CTAG	1 cut(s)	113
StyI	CCWWGG	1 cut(s)	573
TaaI	ACNGT	2 cut(s)	23, 102
TaqI	TCGA	1 cut(s)	209
TasI	AATT	4 cut(s)	149, 293, 497, 544
TfiI	GAWTC	1 cut(s)	44
Tru1I	TTAA	1 cut(s)	667
Tru9I	TTAA	1 cut(s)	667
TscAI	CASTG	2 cut(s)	259, 544
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	2 cut(s)	452, 490
Tsp45I	GTSAC	1 cut(s)	14
TspGWI	ACGGA	1 cut(s)	161
TspRI	CASTG	2 cut(s)	259, 544
Van91I	CCANNNNNTGG	1 cut(s)	264
VpaK11BI	GGWCC	2 cut(s)	529, 660
XapI	RAATTY	1 cut(s)	497
XceI	RCATGY	1 cut(s)	630
XmiI	GTMKAC	1 cut(s)	104
XspI	CTAG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.