Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0004479

Physical Location & Seq

Genomic Coordinates Reverse (-)

1314959 .. 1318591

Gene Structure 3633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1016300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGCTTCTTATCCTACTGTTTGCAAGGCTTTATTGCATTTGCTTCTCTAGGAAATTTGGAGCCAGGGCGGTACGAAGGTCGTTGGGTTTTCACTCAAACTTTCCCCACAAGGATTTTATCAGGCGGATTCGGATGGAGAGTAATAATCAGAACTGTAGCCTAAGAGGTGGCAAGGAGGATTCAAGAGGTGCCTTGGTTGTTCTTGAAGGCTTGGATCGTTGTGGGAAGACAACACAATCAACTAGACTAGTCAAAAACTTGGAGAGGGTAGGGTATTCAGCTGAGTTGTGGCGGTTTCCTGACAGAACTACAAGTGTTGGGAAAATGATATCTTCGTATCTTTCCAACGAATCACAACTGGATGATCATACAATCCATCTACTCTTTAGTGCCAACCGTTGGGAGACGAGATCATTGATGGAGAGCAAATTGAAAAGTGGAACCACCCTTGTCGTTGACCGTTATTCCTATTCAGGGGTGGCATTTTCATCTGCCAAAGGACTTGATATTGAATGGTGTAAGGCTCCGGAGATTGGGTTATTGGCTCCAGATCTTGTAGTGTACCTTGACATACCACCTGAGAAAGCTGCAGAAAGAGGAGGCTATGGAGGTGAGAGATACGAGCAGCTTGAGTTTCAGAAGAAGGTTGGTCAGAACTATCAGGTCCTCCGCGGTCCCACTTGGAAGATCATAGATGCTTGTTCATCCATGGAGGAAGTTGAGGAACAGTTGCAAAAGATGGTACTCGATTGTGTAAAAACATGCCAAGAAGGGAAACCCCTCTCTTGTCTCTGGTCTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004798 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006139 GO:0006220 GO:0006221 GO:0006227 GO:0006233 GO:0006235 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009041 GO:0009058 GO:0009117 GO:0009123 GO:0009132 GO:0009133 GO:0009138 GO:0009139 GO:0009141 GO:0009142 GO:0009147 GO:0009148 GO:0009165 GO:0009186 GO:0009189 GO:0009196 GO:0009197 GO:0009200 GO:0009202 GO:0009211 GO:0009212 GO:0009219 GO:0009221 GO:0009262 GO:0009263 GO:0009265 GO:0009394 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0019692 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046072 GO:0046075 GO:0046077 GO:0046385 GO:0046483 GO:0046940 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050145 GO:0055086 GO:0061458 GO:0070013 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

Thymidylate_kin

Protein Analysis

268

Amino Acids

30.3

Weight (kDa)

8.8

Isoelectric Point (pI)

40.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thymidylate_kin	PF02223	68 - 243	3.7e-47	Thymidylate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59440 AT5G59440 AT5G59440
fragaria_vesca	FvH4_6g52930 FvH4_6g52930 FvH4_6g52930 FvH4_6g52930
malus_domestica	MD09G1015900.v1.1 MD17G1016300.v1.1
prunus_persica	Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G301400_v2.0.a1 Prupe.3G301400_v2.0.a1
pyrus_communis	pycom111g01300 pycom17g01320
rosa_chinensis	RchiOBHm_Chr2g0174641
rosa_laevigata	RLG00000022279
rosa_multiflora	Rmu_sc0007189.1_g000008
rosa_roxburghii	Rroxscaffold_2G00077980
rosa_rugosa	Rorug02G0578500 Rorug02G0578500 Rorug02G0578500
rosa_samantha	Rh2AG659600 Rh2BG670400 Rh2CG633700 Rh2DG684100
rosa_wichuraiana	Rw2G054020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	188
AccB7I	CCANNNNNTGG	1 cut(s)	399
AccII	CGCG	1 cut(s)	672
AccIII	TCCGGA	1 cut(s)	526
AciI	CCGC	5 cut(s)	68, 124, 292, 670, 672
AclWI	GGATC	1 cut(s)	222
AcsI	RAATTY	1 cut(s)	53
AfaI	GTAC	3 cut(s)	72, 563, 744
AfiI	CCNNNNNNNGG	3 cut(s)	399, 474, 533
AgsI	TTSAA	4 cut(s)	183, 206, 433, 512
AhlI	ACTAGT	1 cut(s)	247
AjnI	CCWGG	1 cut(s)	62
AluBI	AGCT	3 cut(s)	281, 587, 628
AluI	AGCT	3 cut(s)	281, 587, 628
Alw26I	GTCTC	2 cut(s)	398, 794
AlwI	GGATC	1 cut(s)	222
Aor13HI	TCCGGA	1 cut(s)	526
ApeKI	GCWGC	2 cut(s)	587, 625
ApoI	RAATTY	1 cut(s)	53
AspS9I	GGNCC	2 cut(s)	664, 674
AsuHPI	GGTGA	1 cut(s)	623
AvaII	GGWCC	2 cut(s)	664, 674
BaeI	ACNNNNGTAYC	2 cut(s)	62, 95
BanI	GGYRCC	1 cut(s)	188
BbsI	GAAGAC	1 cut(s)	233
BbvI	GCAGC	2 cut(s)	574, 637
BccI	CCATC	4 cut(s)	127, 384, 412, 733
BciT130I	CCWGG	1 cut(s)	64
BclI	TGATCA	1 cut(s)	364
BcoDI	GTCTC	2 cut(s)	398, 794
BcuI	ACTAGT	1 cut(s)	247
BfaI	CTAG	3 cut(s)	48, 243, 248
BfmI	CTRYAG	2 cut(s)	154, 588
BglII	AGATCT	1 cut(s)	550
BisI	GCNGC	2 cut(s)	588, 626
BlsI	GCNGC	2 cut(s)	589, 627
Bme1390I	CCNGG	1 cut(s)	64
Bme18I	GGWCC	2 cut(s)	664, 674
BmgT120I	GGNCC	2 cut(s)	664, 674
BmiI	GGNNCC	6 cut(s)	61, 190, 442, 525, 546, 676
BmrFI	CCNGG	1 cut(s)	64
BmsI	GCATC	1 cut(s)	685
BpiI	GAAGAC	1 cut(s)	233
BpmI	CTGGAG	1 cut(s)	531
BpuEI	CTTGAG	1 cut(s)	650
BsaJI	CCNNGG	4 cut(s)	63, 192, 670, 708
BsaWI	WCCGGW	1 cut(s)	526
BsaXI	ACNNNNNCTCC	2 cut(s)	521, 551
Bsc4I	CCNNNNNNNGG	3 cut(s)	399, 474, 533
Bse1I	ACTGG	1 cut(s)	363
BseAI	TCCGGA	1 cut(s)	526
BseBI	CCWGG	1 cut(s)	64
BseDI	CCNNGG	4 cut(s)	63, 192, 670, 708
BseGI	GGATG	3 cut(s)	138, 367, 704
BseLI	CCNNNNNNNGG	3 cut(s)	399, 474, 533
BseMII	CTCAG	2 cut(s)	273, 570
BseNI	ACTGG	1 cut(s)	363
BseRI	GAGGAG	1 cut(s)	612
BseXI	GCAGC	2 cut(s)	574, 637
Bsh1236I	CGCG	1 cut(s)	672
BshNI	GGYRCC	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	527
BslFI	GGGAC	1 cut(s)	660
BslI	CCNNNNNNNGG	3 cut(s)	399, 474, 533
BsmAI	GTCTC	2 cut(s)	398, 794
BsmBI	CGTCTC	1 cut(s)	398
BsmFI	GGGAC	1 cut(s)	660
Bsp13I	TCCGGA	1 cut(s)	526
Bsp143I	GATC	5 cut(s)	214, 364, 410, 550, 687
Bsp19I	CCATGG	1 cut(s)	708
BspACI	CCGC	5 cut(s)	68, 124, 292, 670, 672
BspCNI	CTCAG	2 cut(s)	274, 571
BspEI	TCCGGA	1 cut(s)	526
BspFNI	CGCG	1 cut(s)	672
BspLI	GGNNCC	6 cut(s)	61, 190, 442, 525, 546, 676
BspMAI	CTGCAG	1 cut(s)	592
BspPI	GGATC	1 cut(s)	222
BspT107I	GGYRCC	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	363
BssECI	CCNNGG	4 cut(s)	63, 192, 670, 708
BssMI	GATC	5 cut(s)	214, 364, 410, 550, 687
BssT1I	CCWWGG	2 cut(s)	192, 708
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	5 cut(s)	18, 155, 398, 461, 729
BstDEI	CTNAG	3 cut(s)	161, 282, 579
BstDSI	CCRYGG	2 cut(s)	670, 708
BstF5I	GGATG	3 cut(s)	138, 367, 704
BstFNI	CGCG	1 cut(s)	672
BstKTI	GATC	5 cut(s)	217, 367, 413, 553, 690
BstMAI	GTCTC	2 cut(s)	398, 794
BstMBI	GATC	5 cut(s)	214, 364, 410, 550, 687
BstNI	CCWGG	1 cut(s)	64
BstNSI	RCATGY	1 cut(s)	765
BstSCI	CCNGG	1 cut(s)	62
BstSFI	CTRYAG	2 cut(s)	154, 588
BstUI	CGCG	1 cut(s)	672
BstV1I	GCAGC	2 cut(s)	574, 637
BstV2I	GAAGAC	1 cut(s)	233
BstX2I	RGATCY	1 cut(s)	550
BstYI	RGATCY	1 cut(s)	550
BtgI	CCRYGG	2 cut(s)	670, 708
BtsCI	GGATG	3 cut(s)	138, 367, 704
Cfr13I	GGNCC	2 cut(s)	664, 674
Cfr42I	CCGCGG	1 cut(s)	673
Csp6I	GTAC	3 cut(s)	71, 562, 743
CviAII	CATG	2 cut(s)	709, 762
CviQI	GTAC	3 cut(s)	71, 562, 743
DdeI	CTNAG	3 cut(s)	161, 282, 579
DpnI	GATC	5 cut(s)	216, 366, 412, 552, 689
DpnII	GATC	5 cut(s)	214, 364, 410, 550, 687
EciI	GGCGGA	1 cut(s)	139
Eco130I	CCWWGG	2 cut(s)	192, 708
Eco32I	GATATC	1 cut(s)	330
Eco47I	GGWCC	2 cut(s)	664, 674
EcoO109I	RGGNCCY	1 cut(s)	664
EcoRII	CCWGG	1 cut(s)	62
EcoRV	GATATC	1 cut(s)	330
EcoT14I	CCWWGG	2 cut(s)	192, 708
ErhI	CCWWGG	2 cut(s)	192, 708
Esp3I	CGTCTC	1 cut(s)	398
FaeI	CATG	2 cut(s)	712, 765
FaiI	YATR	6 cut(s)	369, 572, 606, 692, 710, 763
FaqI	GGGAC	1 cut(s)	660
FatI	CATG	2 cut(s)	708, 761
FbaI	TGATCA	1 cut(s)	364
Fnu4HI	GCNGC	2 cut(s)	588, 626
FokI	GGATG	3 cut(s)	145, 374, 691
Fsp4HI	GCNGC	2 cut(s)	588, 626
FspBI	CTAG	3 cut(s)	48, 243, 248
GluI	GCNGC	2 cut(s)	588, 626
GsuI	CTGGAG	1 cut(s)	531
HapII	CCGG	1 cut(s)	527
Hin1II	CATG	2 cut(s)	712, 765
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HinfI	GANTC	3 cut(s)	127, 179, 350
HpaII	CCGG	1 cut(s)	527
HphI	GGTGA	1 cut(s)	623
Hpy166II	GTNNAC	2 cut(s)	457, 562
Hpy188I	TCNGA	4 cut(s)	132, 150, 639, 654
Hpy188III	TCNNGA	5 cut(s)	183, 203, 299, 527, 548
Hpy8I	GTNNAC	2 cut(s)	457, 562
HpyAV	CCTTC	4 cut(s)	69, 200, 637, 764
HpyCH4III	ACNGT	5 cut(s)	18, 155, 398, 461, 729
HpyCH4V	TGCA	4 cut(s)	23, 36, 590, 733
HpyF3I	CTNAG	3 cut(s)	161, 282, 579
Hsp92II	CATG	2 cut(s)	712, 765
Kpn2I	TCCGGA	1 cut(s)	526
Ksp22I	TGATCA	1 cut(s)	364
KspI	CCGCGG	1 cut(s)	673
Kzo9I	GATC	5 cut(s)	214, 364, 410, 550, 687
LmnI	GCTCC	3 cut(s)	59, 529, 550
Lsp1109I	GCAGC	2 cut(s)	574, 637
LweI	GCATC	1 cut(s)	685
MaeI	CTAG	3 cut(s)	48, 243, 248
MalI	GATC	5 cut(s)	216, 366, 412, 552, 689
MboI	GATC	5 cut(s)	214, 364, 410, 550, 687
MboII	GAAGA	4 cut(s)	238, 324, 652, 697
MflI	RGATCY	1 cut(s)	550
MluCI	AATT	2 cut(s)	53, 428
MmeI	TCCRAC	1 cut(s)	369
MroI	TCCGGA	1 cut(s)	526
MseI	TTAA	1 cut(s)	802
MspA1I	CMGCKG	2 cut(s)	281, 672
MspI	CCGG	1 cut(s)	527
MspR9I	CCNGG	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	64
MvnI	CGCG	1 cut(s)	672
NcoI	CCATGG	1 cut(s)	708
NdeII	GATC	5 cut(s)	214, 364, 410, 550, 687
NlaIII	CATG	2 cut(s)	712, 765
NlaIV	GGNNCC	6 cut(s)	61, 190, 442, 525, 546, 676
NspI	RCATGY	1 cut(s)	765
PfeI	GAWTC	3 cut(s)	127, 179, 350
PflMI	CCANNNNNTGG	1 cut(s)	399
PkrI	GCNGC	2 cut(s)	589, 627
PpuMI	RGGWCCY	1 cut(s)	664
Psp5II	RGGWCCY	1 cut(s)	664
Psp6I	CCWGG	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	6 cut(s)	61, 190, 442, 525, 546, 676
PspPI	GGNCC	2 cut(s)	664, 674
PspPPI	RGGWCCY	1 cut(s)	664
PstI	CTGCAG	1 cut(s)	592
PsuI	RGATCY	1 cut(s)	550
PvuII	CAGCTG	1 cut(s)	281
RsaI	GTAC	3 cut(s)	72, 563, 744
RsaNI	GTAC	3 cut(s)	71, 562, 743
SacII	CCGCGG	1 cut(s)	673
SaqAI	TTAA	1 cut(s)	802
SatI	GCNGC	2 cut(s)	588, 626
Sau3AI	GATC	5 cut(s)	214, 364, 410, 550, 687
Sau96I	GGNCC	2 cut(s)	664, 674
ScrFI	CCNGG	1 cut(s)	64
SfaNI	GCATC	1 cut(s)	685
SfcI	CTRYAG	2 cut(s)	154, 588
Sfr303I	CCGCGG	1 cut(s)	673
SgrBI	CCGCGG	1 cut(s)	673
SinI	GGWCC	2 cut(s)	664, 674
SmlI	CTYRAG	1 cut(s)	629
SmoI	CTYRAG	1 cut(s)	629
SpeI	ACTAGT	1 cut(s)	247
Sse9I	AATT	2 cut(s)	53, 428
SsiI	CCGC	5 cut(s)	68, 124, 292, 670, 672
SspMI	CTAG	3 cut(s)	48, 243, 248
StyD4I	CCNGG	1 cut(s)	62
StyI	CCWWGG	2 cut(s)	192, 708
TaaI	ACNGT	5 cut(s)	18, 155, 398, 461, 729
TaqI	TCGA	1 cut(s)	747
TasI	AATT	2 cut(s)	53, 428
TfiI	GAWTC	3 cut(s)	127, 179, 350
Tru1I	TTAA	1 cut(s)	802
Tru9I	TTAA	1 cut(s)	802
TseI	GCWGC	2 cut(s)	587, 625
TspDTI	ATGAA	2 cut(s)	477, 693
Van91I	CCANNNNNTGG	1 cut(s)	399
VpaK11BI	GGWCC	2 cut(s)	664, 674
XapI	RAATTY	1 cut(s)	53
XceI	RCATGY	1 cut(s)	765
XspI	CTAG	3 cut(s)	48, 243, 248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.