Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0004479

Physical Location & Seq

Genomic Coordinates Forward (+)

81740950 .. 81744874

Gene Structure 3925 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G054020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGTTCAAAATAGAAAGGAAAAACATTAGAGCAAGTTCACCCGTTGGGAATTTTGGAGCAAGAACGCTGCAAAGATCATTGAATTTTTCTTTTAAGTTGCCCCAAAAGGTTTTTGTTAGGCGGATTCAAATGGCAGATAATAGTCACAACTGCAGCCTAAGAGGCAAGGAGGATTCAAGAGGTGCATTGGTTGTTTTGGAAGGCTTGGATCGTTGTGGGAAGACTACACAGTCTACTAGACTAGTAAAACACTTAGAAAGTTTAGGGTATTCAACGGAATTATGGAGGTATCCTGACAGGACTACAAGTGTTGGGCAAATGATATCTTCTTATCTTTCGAACAAATCGCAACTAGATGATCGTACTATCCATCTTCTCTTCAGTGCCAACCGGTGGGAGAAGAGATCATTGATGGAAACTAAATTGAAAAGTGGAACCACTCTTGTCGTTGACCGGTATTCTTATTCTGGGGTGGCTTTCTCATCTGCCAAAGGACTGGACATGGAATGGTGTAAGGCTCCTGAGATTGGGTTGTTGGCTCCAGATGTTGTTCTGTACCTTGACATACCACCTGAGAAAGCTGCAGAAAGAGGGGGCTATGGAGGTGAGAGATATGAGCAGCTTGAATTTCAGAAGAAAGTTGGCCAAAGATATAAGGACCTCTGCAGTGCCAATTGGAAGGTCATAGATGCTTGTTCAACCATGGAGGAAGTTGAGAAGCAGTTGCAAGAGATAGTATTGGATTGTGTAAAGACATGCCAAGAAGGAAAACCCCTCTCATGTCTCTGGTCCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004798 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006139 GO:0006220 GO:0006221 GO:0006227 GO:0006233 GO:0006235 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009041 GO:0009058 GO:0009117 GO:0009123 GO:0009132 GO:0009133 GO:0009138 GO:0009139 GO:0009141 GO:0009142 GO:0009147 GO:0009148 GO:0009165 GO:0009186 GO:0009189 GO:0009196 GO:0009197 GO:0009200 GO:0009202 GO:0009211 GO:0009212 GO:0009219 GO:0009221 GO:0009262 GO:0009263 GO:0009265 GO:0009394 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0019692 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046072 GO:0046075 GO:0046077 GO:0046385 GO:0046483 GO:0046940 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050145 GO:0055086 GO:0061458 GO:0070013 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

Thymidylate_kin

Protein Analysis

265

Amino Acids

30.07

Weight (kDa)

8.98

Isoelectric Point (pI)

40.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thymidylate_kin	PF02223	66 - 241	8.6e-47	Thymidylate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59440 AT5G59440 AT5G59440
fragaria_vesca	FvH4_6g52930 FvH4_6g52930 FvH4_6g52930 FvH4_6g52930
malus_domestica	MD09G1015900.v1.1 MD17G1016300.v1.1
prunus_persica	Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G301400_v2.0.a1 Prupe.3G301400_v2.0.a1
pyrus_communis	pycom111g01300 pycom17g01320
rosa_chinensis	RchiOBHm_Chr2g0174641
rosa_laevigata	RLG00000022279
rosa_multiflora	Rmu_sc0007189.1_g000008
rosa_roxburghii	Rroxscaffold_2G00077980
rosa_rugosa	Rorug02G0578500 Rorug02G0578500 Rorug02G0578500
rosa_samantha	Rh2AG659600 Rh2BG670400 Rh2CG633700 Rh2DG684100
rosa_wichuraiana	Rw2G054020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	229
AccB7I	CCANNNNNTGG	1 cut(s)	393
AccI	GTMKAC	1 cut(s)	233
AciI	CCGC	1 cut(s)	121
AclWI	GGATC	1 cut(s)	216
AcoI	YGGCCR	1 cut(s)	643
AcsI	RAATTY	3 cut(s)	49, 82, 626
AcuI	CTGAAG	1 cut(s)	364
AfaI	GTAC	2 cut(s)	364, 557
AfiI	CCNNNNNNNGG	2 cut(s)	393, 527
AgeI	ACCGGT	2 cut(s)	390, 453
AgsI	TTSAA	8 cut(s)	7, 82, 128, 177, 273, 427, 626, 699
AhlI	ACTAGT	1 cut(s)	241
AluBI	AGCT	2 cut(s)	581, 622
AluI	AGCT	2 cut(s)	581, 622
Alw26I	GTCTC	1 cut(s)	788
AlwI	GGATC	1 cut(s)	216
AoxI	GGCC	1 cut(s)	643
ApeKI	GCWGC	4 cut(s)	67, 153, 581, 619
ApoI	RAATTY	3 cut(s)	49, 82, 626
AsiGI	ACCGGT	2 cut(s)	390, 453
AspS9I	GGNCC	2 cut(s)	658, 789
AsuHPI	GGTGA	2 cut(s)	30, 617
AsuII	TTCGAA	1 cut(s)	338
AvaII	GGWCC	2 cut(s)	658, 789
BalI	TGGCCA	1 cut(s)	645
BbsI	GAAGAC	1 cut(s)	227
BbvI	GCAGC	4 cut(s)	54, 165, 568, 631
BccI	CCATC	2 cut(s)	378, 406
BciVI	GTATCC	1 cut(s)	300
BcoDI	GTCTC	1 cut(s)	788
BcuI	ACTAGT	1 cut(s)	241
BfaI	CTAG	3 cut(s)	237, 242, 353
BfmI	CTRYAG	3 cut(s)	151, 582, 664
BfuI	GTATCC	1 cut(s)	300
BglI	GCCNNNNNGGC	1 cut(s)	162
BisI	GCNGC	4 cut(s)	68, 154, 582, 620
BlsI	GCNGC	4 cut(s)	69, 155, 583, 621
Bme18I	GGWCC	2 cut(s)	658, 789
BmgT120I	GGNCC	2 cut(s)	658, 789
BmiI	GGNNCC	3 cut(s)	436, 519, 540
BmsI	GCATC	1 cut(s)	679
BpiI	GAAGAC	1 cut(s)	227
BpmI	CTGGAG	1 cut(s)	525
Bpu14I	TTCGAA	1 cut(s)	338
BsaJI	CCNNGG	1 cut(s)	702
BsaWI	WCCGGW	2 cut(s)	390, 453
Bsc4I	CCNNNNNNNGG	2 cut(s)	393, 527
Bse118I	RCCGGY	2 cut(s)	390, 453
Bse1I	ACTGG	1 cut(s)	501
BseDI	CCNNGG	1 cut(s)	702
BseLI	CCNNNNNNNGG	2 cut(s)	393, 527
BseMII	CTCAG	2 cut(s)	513, 564
BseNI	ACTGG	1 cut(s)	501
BseXI	GCAGC	4 cut(s)	54, 165, 568, 631
BshFI	GGCC	1 cut(s)	645
BshTI	ACCGGT	2 cut(s)	390, 453
BsiSI	CCGG	2 cut(s)	391, 454
BslI	CCNNNNNNNGG	2 cut(s)	393, 527
BsmAI	GTCTC	1 cut(s)	788
BsnI	GGCC	1 cut(s)	645
Bsp119I	TTCGAA	1 cut(s)	338
Bsp143I	GATC	4 cut(s)	74, 208, 358, 404
Bsp19I	CCATGG	1 cut(s)	702
BspACI	CCGC	1 cut(s)	121
BspANI	GGCC	1 cut(s)	645
BspCNI	CTCAG	2 cut(s)	514, 565
BspLI	GGNNCC	3 cut(s)	436, 519, 540
BspMAI	CTGCAG	3 cut(s)	155, 586, 668
BspPI	GGATC	1 cut(s)	216
BspT104I	TTCGAA	1 cut(s)	338
BsrFI	RCCGGY	2 cut(s)	390, 453
BsrI	ACTGG	1 cut(s)	501
BssAI	RCCGGY	2 cut(s)	390, 453
BssECI	CCNNGG	1 cut(s)	702
BssMI	GATC	4 cut(s)	74, 208, 358, 404
BssT1I	CCWWGG	1 cut(s)	702
Bst4CI	ACNGT	1 cut(s)	231
Bst6I	CTCTTC	2 cut(s)	383, 395
BstBI	TTCGAA	1 cut(s)	338
BstDEI	CTNAG	4 cut(s)	158, 253, 522, 573
BstDSI	CCRYGG	1 cut(s)	702
BstKTI	GATC	4 cut(s)	77, 211, 361, 407
BstMAI	GTCTC	1 cut(s)	788
BstMBI	GATC	4 cut(s)	74, 208, 358, 404
BstMWI	GCNNNNNNNGC	1 cut(s)	162
BstNSI	RCATGY	1 cut(s)	759
BstSFI	CTRYAG	3 cut(s)	151, 582, 664
BstV1I	GCAGC	4 cut(s)	54, 165, 568, 631
BstV2I	GAAGAC	1 cut(s)	227
BstXI	CCANNNNNNTGG	1 cut(s)	496
BsuI	GTATCC	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	645
BtgI	CCRYGG	1 cut(s)	702
BtsI	GCAGTG	1 cut(s)	673
BtsIMutI	CAGTG	2 cut(s)	388, 673
Cfr10I	RCCGGY	2 cut(s)	390, 453
Cfr13I	GGNCC	2 cut(s)	658, 789
Csp6I	GTAC	2 cut(s)	363, 556
CspAI	ACCGGT	2 cut(s)	390, 453
CviAII	CATG	4 cut(s)	502, 703, 756, 780
CviJI	RGCY	9 cut(s)	156, 204, 476, 518, 539, 581, 597, 622, 645
CviKI_1	RGCY	9 cut(s)	156, 204, 476, 518, 539, 581, 597, 622, 645
CviQI	GTAC	2 cut(s)	363, 556
DdeI	CTNAG	4 cut(s)	158, 253, 522, 573
DpnI	GATC	4 cut(s)	76, 210, 360, 406
DpnII	GATC	4 cut(s)	74, 208, 358, 404
DrdI	GACNNNNNNGTC	1 cut(s)	229
DseDI	GACNNNNNNGTC	1 cut(s)	229
EaeI	YGGCCR	1 cut(s)	643
Eam1104I	CTCTTC	2 cut(s)	383, 395
EarI	CTCTTC	2 cut(s)	383, 395
EciI	GGCGGA	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	702
Eco32I	GATATC	1 cut(s)	324
Eco47I	GGWCC	2 cut(s)	658, 789
Eco57I	CTGAAG	1 cut(s)	364
EcoO109I	RGGNCCY	1 cut(s)	658
EcoRV	GATATC	1 cut(s)	324
EcoT14I	CCWWGG	1 cut(s)	702
ErhI	CCWWGG	1 cut(s)	702
FaeI	CATG	4 cut(s)	505, 706, 759, 783
FatI	CATG	4 cut(s)	501, 702, 755, 779
FblI	GTMKAC	1 cut(s)	233
Fnu4HI	GCNGC	4 cut(s)	68, 154, 582, 620
Fsp4HI	GCNGC	4 cut(s)	68, 154, 582, 620
FspBI	CTAG	3 cut(s)	237, 242, 353
GluI	GCNGC	4 cut(s)	68, 154, 582, 620
GsuI	CTGGAG	1 cut(s)	525
HaeIII	GGCC	1 cut(s)	645
HapII	CCGG	2 cut(s)	391, 454
Hin1II	CATG	4 cut(s)	505, 706, 759, 783
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HinfI	GANTC	2 cut(s)	124, 173
HpaII	CCGG	2 cut(s)	391, 454
HphI	GGTGA	2 cut(s)	30, 617
Hpy166II	GTNNAC	3 cut(s)	38, 234, 451
Hpy188I	TCNGA	1 cut(s)	633
Hpy188III	TCNNGA	4 cut(s)	177, 293, 521, 542
Hpy8I	GTNNAC	3 cut(s)	38, 234, 451
HpyAV	CCTTC	3 cut(s)	194, 673, 758
HpyCH4III	ACNGT	1 cut(s)	231
HpyCH4V	TGCA	6 cut(s)	70, 153, 185, 584, 666, 727
HpyF10VI	GCNNNNNNNGC	1 cut(s)	162
HpyF3I	CTNAG	4 cut(s)	158, 253, 522, 573
Hsp92II	CATG	4 cut(s)	505, 706, 759, 783
Kzo9I	GATC	4 cut(s)	74, 208, 358, 404
LmnI	GCTCC	3 cut(s)	56, 523, 544
Lsp1109I	GCAGC	4 cut(s)	54, 165, 568, 631
LweI	GCATC	1 cut(s)	679
MaeI	CTAG	3 cut(s)	237, 242, 353
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	4 cut(s)	76, 210, 360, 406
MboI	GATC	4 cut(s)	74, 208, 358, 404
MboII	GAAGA	6 cut(s)	232, 318, 365, 370, 412, 646
MfeI	CAATTG	1 cut(s)	673
MlsI	TGGCCA	1 cut(s)	645
MluCI	AATT	6 cut(s)	49, 82, 278, 422, 626, 673
MluNI	TGGCCA	1 cut(s)	645
MnlI	CCTC	9 cut(s)	155, 163, 173, 279, 584, 596, 671, 700, 785
Mox20I	TGGCCA	1 cut(s)	645
MscI	TGGCCA	1 cut(s)	645
MseI	TTAA	2 cut(s)	93, 796
Msp20I	TGGCCA	1 cut(s)	645
MspI	CCGG	2 cut(s)	391, 454
MunI	CAATTG	1 cut(s)	673
MwoI	GCNNNNNNNGC	1 cut(s)	162
NcoI	CCATGG	1 cut(s)	702
NdeII	GATC	4 cut(s)	74, 208, 358, 404
NlaIII	CATG	4 cut(s)	505, 706, 759, 783
NlaIV	GGNNCC	3 cut(s)	436, 519, 540
NmuCI	GTSAC	1 cut(s)	143
NspI	RCATGY	1 cut(s)	759
NspV	TTCGAA	1 cut(s)	338
PfeI	GAWTC	2 cut(s)	124, 173
PflMI	CCANNNNNTGG	1 cut(s)	393
PinAI	ACCGGT	2 cut(s)	390, 453
PkrI	GCNGC	4 cut(s)	69, 155, 583, 621
PpuMI	RGGWCCY	1 cut(s)	658
Psp5II	RGGWCCY	1 cut(s)	658
PspN4I	GGNNCC	3 cut(s)	436, 519, 540
PspPI	GGNCC	2 cut(s)	658, 789
PspPPI	RGGWCCY	1 cut(s)	658
PstI	CTGCAG	3 cut(s)	155, 586, 668
RsaI	GTAC	2 cut(s)	364, 557
RsaNI	GTAC	2 cut(s)	363, 556
SaqAI	TTAA	2 cut(s)	93, 796
SatI	GCNGC	4 cut(s)	68, 154, 582, 620
Sau3AI	GATC	4 cut(s)	74, 208, 358, 404
Sau96I	GGNCC	2 cut(s)	658, 789
SfaNI	GCATC	1 cut(s)	679
SfcI	CTRYAG	3 cut(s)	151, 582, 664
SfuI	TTCGAA	1 cut(s)	338
SinI	GGWCC	2 cut(s)	658, 789
SpeI	ACTAGT	1 cut(s)	241
Sse9I	AATT	6 cut(s)	49, 82, 278, 422, 626, 673
SsiI	CCGC	1 cut(s)	121
SspMI	CTAG	3 cut(s)	237, 242, 353
StyI	CCWWGG	1 cut(s)	702
TaaI	ACNGT	1 cut(s)	231
TaqI	TCGA	1 cut(s)	338
TasI	AATT	6 cut(s)	49, 82, 278, 422, 626, 673
TfiI	GAWTC	2 cut(s)	124, 173
Tru1I	TTAA	2 cut(s)	93, 796
Tru9I	TTAA	2 cut(s)	93, 796
TscAI	CASTG	2 cut(s)	388, 673
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	4 cut(s)	67, 153, 581, 619
Tsp45I	GTSAC	1 cut(s)	143
TspGWI	ACGGA	1 cut(s)	290
TspRI	CASTG	2 cut(s)	388, 673
Van91I	CCANNNNNTGG	1 cut(s)	393
VpaK11BI	GGWCC	2 cut(s)	658, 789
XapI	RAATTY	3 cut(s)	49, 82, 626
XceI	RCATGY	1 cut(s)	759
XmiI	GTMKAC	1 cut(s)	233
XspI	CTAG	3 cut(s)	237, 242, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.