Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004479

Physical Location & Seq

Genomic Coordinates Forward (+)

80578983 .. 80582931

Gene Structure 3949 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG633700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGAGCCATGCTTCTTATCTCACAGTTTGCAAGGCTTTGAATTTTGGAGCAAGAACGCTGCGAAGATCATCGAATTTTTCTTTTAAGTTGCCCCAAAAGGTTTTTGTTAGGCGGATTCAAATGGCAGATAATAGTCACAACTGCAGCCTAAGAGGCAAGGAGGATTCAAGAGGTGCATTGGTTGTTTTGGAAGGCTTGGATCGTTGTGGGAAGACTACACAGTCTACTAGACTAGTAAAACACTTAGAAAGTTTAGGGTATTCAACGGAATTATGGAGGTATCCTGACAGGACTACAAGTGTTGGGCAAATGATATCTTCTTATCTTTCGAACAAATCGCAACTAGATGATCGTACTATCCATCTTCTCTTCAGTGCCAACCGGTGGGAGAAGAGATCATTGATGGAAACTAAATTGAAAAGTGGAACCACTCTTGTCGTTGACCGGTATTCTTATTCTGGGGTGGCTTTCTCATCTGCCAAAGGACTGGACATGGAATGGTGTAAGGCTCCTGAGATTGGGTTGTTGGCTCCAGATGTTGTTCTGTACCTTGACATACCACCTGAGGTAAGTAAACTGTGTAATGTTTCATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004798 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006139 GO:0006220 GO:0006221 GO:0006227 GO:0006233 GO:0006235 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009041 GO:0009058 GO:0009117 GO:0009123 GO:0009132 GO:0009133 GO:0009138 GO:0009139 GO:0009141 GO:0009142 GO:0009147 GO:0009148 GO:0009165 GO:0009186 GO:0009189 GO:0009196 GO:0009197 GO:0009200 GO:0009202 GO:0009211 GO:0009212 GO:0009219 GO:0009221 GO:0009262 GO:0009263 GO:0009265 GO:0009394 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0019692 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046072 GO:0046075 GO:0046077 GO:0046385 GO:0046483 GO:0046940 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050145 GO:0055086 GO:0061458 GO:0070013 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

Thymidylate_kin

Protein Analysis

198

Amino Acids

22.29

Weight (kDa)

9.44

Isoelectric Point (pI)

38.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thymidylate_kin	PF02223	63 - 191	9.3e-37	Thymidylate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59440 AT5G59440 AT5G59440
fragaria_vesca	FvH4_6g52930 FvH4_6g52930 FvH4_6g52930 FvH4_6g52930
malus_domestica	MD09G1015900.v1.1 MD17G1016300.v1.1
prunus_persica	Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G301400_v2.0.a1 Prupe.3G301400_v2.0.a1
pyrus_communis	pycom111g01300 pycom17g01320
rosa_chinensis	RchiOBHm_Chr2g0174641
rosa_laevigata	RLG00000022279
rosa_multiflora	Rmu_sc0007189.1_g000008
rosa_roxburghii	Rroxscaffold_2G00077980
rosa_rugosa	Rorug02G0578500 Rorug02G0578500 Rorug02G0578500
rosa_samantha	Rh2AG659600 Rh2BG670400 Rh2CG633700 Rh2DG684100
rosa_wichuraiana	Rw2G054020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	220
AccB7I	CCANNNNNTGG	1 cut(s)	384
AccI	GTMKAC	1 cut(s)	224
AciI	CCGC	1 cut(s)	112
AclWI	GGATC	1 cut(s)	207
AcsI	RAATTY	2 cut(s)	40, 73
AcuI	CTGAAG	1 cut(s)	355
AfaI	GTAC	2 cut(s)	355, 548
AfiI	CCNNNNNNNGG	2 cut(s)	384, 518
AgeI	ACCGGT	2 cut(s)	381, 444
AgsI	TTSAA	5 cut(s)	40, 119, 168, 264, 418
AhlI	ACTAGT	1 cut(s)	232
AlwI	GGATC	1 cut(s)	207
ApeKI	GCWGC	2 cut(s)	58, 144
ApoI	RAATTY	2 cut(s)	40, 73
AsiGI	ACCGGT	2 cut(s)	381, 444
AsuII	TTCGAA	1 cut(s)	329
AxyI	CCTNAGG	1 cut(s)	564
BbsI	GAAGAC	1 cut(s)	218
BbvI	GCAGC	2 cut(s)	45, 156
BccI	CCATC	2 cut(s)	369, 397
BciVI	GTATCC	1 cut(s)	291
BcuI	ACTAGT	1 cut(s)	232
BfaI	CTAG	3 cut(s)	228, 233, 344
BfmI	CTRYAG	1 cut(s)	142
BfuI	GTATCC	1 cut(s)	291
BglI	GCCNNNNNGGC	1 cut(s)	153
BisI	GCNGC	2 cut(s)	59, 145
BlsI	GCNGC	2 cut(s)	60, 146
BmiI	GGNNCC	3 cut(s)	427, 510, 531
BpiI	GAAGAC	1 cut(s)	218
BpmI	CTGGAG	1 cut(s)	516
Bpu14I	TTCGAA	1 cut(s)	329
BsaWI	WCCGGW	2 cut(s)	381, 444
Bsc4I	CCNNNNNNNGG	2 cut(s)	384, 518
Bse118I	RCCGGY	2 cut(s)	381, 444
Bse1I	ACTGG	1 cut(s)	492
Bse21I	CCTNAGG	1 cut(s)	564
BseLI	CCNNNNNNNGG	2 cut(s)	384, 518
BseMII	CTCAG	2 cut(s)	504, 555
BseNI	ACTGG	1 cut(s)	492
BseXI	GCAGC	2 cut(s)	45, 156
BshTI	ACCGGT	2 cut(s)	381, 444
BsiSI	CCGG	2 cut(s)	382, 445
BslI	CCNNNNNNNGG	2 cut(s)	384, 518
Bsp119I	TTCGAA	1 cut(s)	329
Bsp143I	GATC	4 cut(s)	65, 199, 349, 395
BspACI	CCGC	1 cut(s)	112
BspCNI	CTCAG	2 cut(s)	505, 556
BspLI	GGNNCC	3 cut(s)	427, 510, 531
BspMAI	CTGCAG	1 cut(s)	146
BspPI	GGATC	1 cut(s)	207
BspT104I	TTCGAA	1 cut(s)	329
BsrFI	RCCGGY	2 cut(s)	381, 444
BsrI	ACTGG	1 cut(s)	492
BssAI	RCCGGY	2 cut(s)	381, 444
BssMI	GATC	4 cut(s)	65, 199, 349, 395
Bst4CI	ACNGT	3 cut(s)	25, 222, 579
Bst6I	CTCTTC	2 cut(s)	374, 386
BstBI	TTCGAA	1 cut(s)	329
BstDEI	CTNAG	4 cut(s)	149, 244, 513, 564
BstKTI	GATC	4 cut(s)	68, 202, 352, 398
BstMBI	GATC	4 cut(s)	65, 199, 349, 395
BstMWI	GCNNNNNNNGC	1 cut(s)	153
BstSFI	CTRYAG	1 cut(s)	142
BstV1I	GCAGC	2 cut(s)	45, 156
BstV2I	GAAGAC	1 cut(s)	218
BstXI	CCANNNNNNTGG	1 cut(s)	487
Bsu36I	CCTNAGG	1 cut(s)	564
BsuI	GTATCC	1 cut(s)	291
BtsIMutI	CAGTG	1 cut(s)	379
Cfr10I	RCCGGY	2 cut(s)	381, 444
Csp6I	GTAC	2 cut(s)	354, 547
CspAI	ACCGGT	2 cut(s)	381, 444
CviAII	CATG	2 cut(s)	8, 493
CviJI	RGCY	7 cut(s)	6, 35, 147, 195, 467, 509, 530
CviKI_1	RGCY	7 cut(s)	6, 35, 147, 195, 467, 509, 530
CviQI	GTAC	2 cut(s)	354, 547
DdeI	CTNAG	4 cut(s)	149, 244, 513, 564
DpnI	GATC	4 cut(s)	67, 201, 351, 397
DpnII	GATC	4 cut(s)	65, 199, 349, 395
DrdI	GACNNNNNNGTC	1 cut(s)	220
DseDI	GACNNNNNNGTC	1 cut(s)	220
Eam1104I	CTCTTC	2 cut(s)	374, 386
EarI	CTCTTC	2 cut(s)	374, 386
EciI	GGCGGA	1 cut(s)	127
Eco32I	GATATC	1 cut(s)	315
Eco57I	CTGAAG	1 cut(s)	355
Eco81I	CCTNAGG	1 cut(s)	564
EcoRV	GATATC	1 cut(s)	315
FaeI	CATG	2 cut(s)	11, 496
FaiI	YATR	4 cut(s)	9, 274, 494, 557
FatI	CATG	2 cut(s)	7, 492
FblI	GTMKAC	1 cut(s)	224
Fnu4HI	GCNGC	2 cut(s)	59, 145
Fsp4HI	GCNGC	2 cut(s)	59, 145
FspBI	CTAG	3 cut(s)	228, 233, 344
GluI	GCNGC	2 cut(s)	59, 145
GsuI	CTGGAG	1 cut(s)	516
HapII	CCGG	2 cut(s)	382, 445
Hin1II	CATG	2 cut(s)	11, 496
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HinfI	GANTC	2 cut(s)	115, 164
HpaII	CCGG	2 cut(s)	382, 445
Hpy166II	GTNNAC	3 cut(s)	225, 442, 575
Hpy188III	TCNNGA	4 cut(s)	168, 284, 512, 533
Hpy8I	GTNNAC	3 cut(s)	225, 442, 575
HpyAV	CCTTC	1 cut(s)	185
HpyCH4III	ACNGT	3 cut(s)	25, 222, 579
HpyCH4V	TGCA	3 cut(s)	30, 144, 176
HpyF10VI	GCNNNNNNNGC	1 cut(s)	153
HpyF3I	CTNAG	4 cut(s)	149, 244, 513, 564
Hsp92II	CATG	2 cut(s)	11, 496
Kzo9I	GATC	4 cut(s)	65, 199, 349, 395
LmnI	GCTCC	3 cut(s)	47, 514, 535
LpnPI	CCDG	9 cut(s)	274, 297, 395, 444, 458, 473, 525, 546, 576
Lsp1109I	GCAGC	2 cut(s)	45, 156
MaeI	CTAG	3 cut(s)	228, 233, 344
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	4 cut(s)	67, 201, 351, 397
MboI	GATC	4 cut(s)	65, 199, 349, 395
MboII	GAAGA	6 cut(s)	75, 223, 309, 356, 361, 403
MluCI	AATT	4 cut(s)	40, 73, 269, 413
MnlI	CCTC	5 cut(s)	146, 154, 164, 270, 559
MseI	TTAA	1 cut(s)	84
MspI	CCGG	2 cut(s)	382, 445
MwoI	GCNNNNNNNGC	1 cut(s)	153
NdeII	GATC	4 cut(s)	65, 199, 349, 395
NlaIII	CATG	2 cut(s)	11, 496
NlaIV	GGNNCC	3 cut(s)	427, 510, 531
NmuCI	GTSAC	1 cut(s)	134
NspV	TTCGAA	1 cut(s)	329
PfeI	GAWTC	2 cut(s)	115, 164
PflMI	CCANNNNNTGG	1 cut(s)	384
PinAI	ACCGGT	2 cut(s)	381, 444
PkrI	GCNGC	2 cut(s)	60, 146
PspN4I	GGNNCC	3 cut(s)	427, 510, 531
PstI	CTGCAG	1 cut(s)	146
RsaI	GTAC	2 cut(s)	355, 548
RsaNI	GTAC	2 cut(s)	354, 547
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	2 cut(s)	59, 145
Sau3AI	GATC	4 cut(s)	65, 199, 349, 395
SetI	ASST	6 cut(s)	102, 175, 281, 552, 565, 570
SfcI	CTRYAG	1 cut(s)	142
SfuI	TTCGAA	1 cut(s)	329
SpeI	ACTAGT	1 cut(s)	232
Sse9I	AATT	4 cut(s)	40, 73, 269, 413
SsiI	CCGC	1 cut(s)	112
SspMI	CTAG	3 cut(s)	228, 233, 344
TaaI	ACNGT	3 cut(s)	25, 222, 579
TaqI	TCGA	2 cut(s)	71, 329
TasI	AATT	4 cut(s)	40, 73, 269, 413
TfiI	GAWTC	2 cut(s)	115, 164
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	1 cut(s)	379
TseFI	GTSAC	1 cut(s)	134
TseI	GCWGC	2 cut(s)	58, 144
Tsp45I	GTSAC	1 cut(s)	134
TspDTI	ATGAA	1 cut(s)	579
TspGWI	ACGGA	1 cut(s)	281
TspRI	CASTG	1 cut(s)	379
Van91I	CCANNNNNTGG	1 cut(s)	384
XapI	RAATTY	2 cut(s)	40, 73
XmiI	GTMKAC	1 cut(s)	224
XspI	CTAG	3 cut(s)	228, 233, 344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.