Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004479

Physical Location & Seq

Genomic Coordinates Forward (+)

26589118 .. 26592975

Gene Structure 3858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G301400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGTCAAGCCAAGTTTACAATTATCAAAAGCGTCAGTGTCTGCCTATAAGTTTTTTGGTGAATTCTTTCTTCTTCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTCCAGTTTTTTGGTGAAGTAAGGGATATGACCCATACTTCTTATCTCACATTTGGCAAGGCTTTGAATTTTGGAGCAGGAGCAGTGCGAAGGTCATTGAACTTTCAATTAAACTTTCCCCACAAGTTTTTTATCAGGAGGATTCGGATGGAAAATAGTAATCACAACTGTAGCCTAAGAGGTGGCAAGGAGGATTCAAGAGGTGCCTTGGTTGTTCTGGAAGGCTTGGATCGTTGTGGCAAGACTACGCAGTCTACTAGACTAGTTGCAAACTTGGAGAGGTTAGGGCATTCAGCTGAATTGTGGCGGTTTCCTGACAGAACGACAAGTGTTGGGCAAATGATATCTTCTTATCTTTCCAACAAATCCCAACTGGATGATCATACAATCCATCTACTCTTTAGTGCCAACCGTTGGGAGAAGAGATCATTGATGGAAAGCAAATTGAAAAGTGGAATCACCCTTGTTGTTGACCGTTATTCTTATTCGGGGGTGGCCTTTTCATCTGCCAAAGGACTTGATATTGAATGGTGTAAGGCTCCAGAGATTGGGTTATTGGCTCCAGATCTTGTAGTGTACCTTGACATACCACCTGAAAAAGCTGCTGAAAGAGGAGGCTACGGAGGTGAGAGATATGAGCAGCTTGAGTTTCAAAAGAAGGTTGGCCAAAACTATCAGGTCCTCCGTGGTCCCACTTGGAAGATCATAGATGCTTGTTCGCCCATGGAGGACATTGAGGAACAGTTGCAAAATATGGCATTGGATTGTGTAAAAACATGCCAAGAAGGGAAACCGCTCTCATGTCGCTGGTCCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004798 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006139 GO:0006220 GO:0006221 GO:0006227 GO:0006233 GO:0006235 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009041 GO:0009058 GO:0009117 GO:0009123 GO:0009132 GO:0009133 GO:0009138 GO:0009139 GO:0009141 GO:0009142 GO:0009147 GO:0009148 GO:0009165 GO:0009186 GO:0009189 GO:0009196 GO:0009197 GO:0009200 GO:0009202 GO:0009211 GO:0009212 GO:0009219 GO:0009221 GO:0009262 GO:0009263 GO:0009265 GO:0009394 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0019692 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046072 GO:0046075 GO:0046077 GO:0046385 GO:0046483 GO:0046940 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050145 GO:0055086 GO:0061458 GO:0070013 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

Thymidylate_kin

Protein Analysis

307

Amino Acids

35.2

Weight (kDa)

8.79

Isoelectric Point (pI)

42.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59440 AT5G59440 AT5G59440
fragaria_vesca	FvH4_6g52930 FvH4_6g52930 FvH4_6g52930 FvH4_6g52930
malus_domestica	MD09G1015900.v1.1 MD17G1016300.v1.1
prunus_persica	Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G301400_v2.0.a1 Prupe.3G301400_v2.0.a1
pyrus_communis	pycom111g01300 pycom17g01320
rosa_chinensis	RchiOBHm_Chr2g0174641
rosa_laevigata	RLG00000022279
rosa_multiflora	Rmu_sc0007189.1_g000008
rosa_roxburghii	Rroxscaffold_2G00077980
rosa_rugosa	Rorug02G0578500 Rorug02G0578500 Rorug02G0578500
rosa_samantha	Rh2AG659600 Rh2BG670400 Rh2CG633700 Rh2DG684100
rosa_wichuraiana	Rw2G054020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	352
AccB1I	GGYRCC	1 cut(s)	305
AccB7I	CCANNNNNTGG	2 cut(s)	516, 650
AccBSI	CCGCTC	1 cut(s)	898
AccI	GTMKAC	1 cut(s)	356
AciI	CCGC	2 cut(s)	409, 896
AclWI	GGATC	1 cut(s)	339
AcoI	YGGCCR	1 cut(s)	766
AcsI	RAATTY	2 cut(s)	61, 169
AfaI	GTAC	1 cut(s)	680
AfiI	CCNNNNNNNGG	2 cut(s)	516, 650
AgsI	TTSAA	7 cut(s)	169, 202, 209, 300, 550, 629, 755
AhlI	ACTAGT	1 cut(s)	364
AluBI	AGCT	3 cut(s)	398, 704, 745
AluI	AGCT	3 cut(s)	398, 704, 745
AlwI	GGATC	1 cut(s)	339
AlwNI	CAGNNNCTG	1 cut(s)	40
AoxI	GGCC	2 cut(s)	597, 766
ApeKI	GCWGC	2 cut(s)	704, 742
ApoI	RAATTY	2 cut(s)	61, 169
Asp700I	GAANNNNTTC	1 cut(s)	65
AspS9I	GGNCC	3 cut(s)	781, 791, 912
AsuHPI	GGTGA	4 cut(s)	70, 128, 553, 740
AvaII	GGWCC	3 cut(s)	781, 791, 912
BalI	TGGCCA	1 cut(s)	768
BanI	GGYRCC	1 cut(s)	305
BbvI	GCAGC	2 cut(s)	691, 754
BccI	CCATC	3 cut(s)	244, 501, 529
BclI	TGATCA	1 cut(s)	481
BcuI	ACTAGT	1 cut(s)	364
BfaI	CTAG	2 cut(s)	360, 365
BfmI	CTRYAG	1 cut(s)	271
BglII	AGATCT	1 cut(s)	667
BisI	GCNGC	2 cut(s)	705, 743
BlsI	GCNGC	2 cut(s)	706, 744
Bme18I	GGWCC	3 cut(s)	781, 791, 912
BmgT120I	GGNCC	3 cut(s)	781, 791, 912
BmiI	GGNNCC	4 cut(s)	307, 642, 663, 793
BmsI	GCATC	1 cut(s)	802
BpmI	CTGGAG	2 cut(s)	627, 648
BpuEI	CTTGAG	1 cut(s)	767
BsaJI	CCNNGG	3 cut(s)	309, 787, 825
Bsc4I	CCNNNNNNNGG	2 cut(s)	516, 650
Bse1I	ACTGG	2 cut(s)	106, 480
BseDI	CCNNGG	3 cut(s)	309, 787, 825
BseGI	GGATG	2 cut(s)	255, 484
BseLI	CCNNNNNNNGG	2 cut(s)	516, 650
BseNI	ACTGG	2 cut(s)	106, 480
BseRI	GAGGAG	1 cut(s)	729
BseXI	GCAGC	2 cut(s)	691, 754
BshFI	GGCC	2 cut(s)	599, 768
BshNI	GGYRCC	1 cut(s)	305
BslFI	GGGAC	1 cut(s)	777
BslI	CCNNNNNNNGG	2 cut(s)	516, 650
BsmFI	GGGAC	1 cut(s)	777
BsmI	GAATGC	1 cut(s)	391
BsnI	GGCC	2 cut(s)	599, 768
Bsp143I	GATC	5 cut(s)	331, 481, 527, 667, 804
Bsp19I	CCATGG	1 cut(s)	825
BspACI	CCGC	2 cut(s)	409, 896
BspANI	GGCC	2 cut(s)	599, 768
BspLI	GGNNCC	4 cut(s)	307, 642, 663, 793
BspPI	GGATC	1 cut(s)	339
BspT107I	GGYRCC	1 cut(s)	305
BsrBI	CCGCTC	1 cut(s)	898
BsrI	ACTGG	2 cut(s)	106, 480
BssECI	CCNNGG	3 cut(s)	309, 787, 825
BssMI	GATC	5 cut(s)	331, 481, 527, 667, 804
BssT1I	CCWWGG	2 cut(s)	309, 825
Bst4CI	ACNGT	4 cut(s)	272, 515, 578, 846
Bst6I	CTCTTC	1 cut(s)	518
BstDEI	CTNAG	1 cut(s)	278
BstDSI	CCRYGG	2 cut(s)	787, 825
BstF5I	GGATG	2 cut(s)	255, 484
BstKTI	GATC	5 cut(s)	334, 484, 530, 670, 807
BstMBI	GATC	5 cut(s)	331, 481, 527, 667, 804
BstNSI	RCATGY	1 cut(s)	882
BstSFI	CTRYAG	1 cut(s)	271
BstV1I	GCAGC	2 cut(s)	691, 754
BstX2I	RGATCY	1 cut(s)	667
BstXI	CCANNNNNNTGG	1 cut(s)	113
BstYI	RGATCY	1 cut(s)	667
BsuRI	GGCC	2 cut(s)	599, 768
BtgI	CCRYGG	2 cut(s)	787, 825
BtsCI	GGATG	2 cut(s)	255, 484
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	2 cut(s)	41, 192
CaiI	CAGNNNCTG	1 cut(s)	40
Cfr13I	GGNCC	3 cut(s)	781, 791, 912
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	679
CviAII	CATG	3 cut(s)	826, 879, 903
CviQI	GTAC	1 cut(s)	679
DdeI	CTNAG	1 cut(s)	278
DpnI	GATC	5 cut(s)	333, 483, 529, 669, 806
DpnII	GATC	5 cut(s)	331, 481, 527, 667, 804
DrdI	GACNNNNNNGTC	1 cut(s)	352
DseDI	GACNNNNNNGTC	1 cut(s)	352
EaeI	YGGCCR	1 cut(s)	766
Eam1104I	CTCTTC	1 cut(s)	518
EarI	CTCTTC	1 cut(s)	518
Eco130I	CCWWGG	2 cut(s)	309, 825
Eco32I	GATATC	1 cut(s)	447
Eco47I	GGWCC	3 cut(s)	781, 791, 912
EcoO109I	RGGNCCY	1 cut(s)	781
EcoRI	GAATTC	1 cut(s)	61
EcoRV	GATATC	1 cut(s)	447
EcoT14I	CCWWGG	2 cut(s)	309, 825
ErhI	CCWWGG	2 cut(s)	309, 825
FaeI	CATG	3 cut(s)	829, 882, 906
FaqI	GGGAC	1 cut(s)	777
FatI	CATG	3 cut(s)	825, 878, 902
FbaI	TGATCA	1 cut(s)	481
FblI	GTMKAC	1 cut(s)	356
Fnu4HI	GCNGC	2 cut(s)	705, 743
FokI	GGATG	2 cut(s)	262, 491
Fsp4HI	GCNGC	2 cut(s)	705, 743
FspBI	CTAG	2 cut(s)	360, 365
GluI	GCNGC	2 cut(s)	705, 743
GsuI	CTGGAG	2 cut(s)	627, 648
HaeIII	GGCC	2 cut(s)	599, 768
HgaI	GACGC	1 cut(s)	20
Hin1II	CATG	3 cut(s)	829, 882, 906
HincII	GTYRAC	1 cut(s)	574
HindII	GTYRAC	1 cut(s)	574
HinfI	GANTC	3 cut(s)	244, 296, 558
HphI	GGTGA	4 cut(s)	70, 128, 553, 740
Hpy166II	GTNNAC	4 cut(s)	16, 357, 574, 679
Hpy188I	TCNGA	1 cut(s)	249
Hpy188III	TCNNGA	6 cut(s)	238, 300, 320, 416, 644, 665
Hpy8I	GTNNAC	4 cut(s)	16, 357, 574, 679
HpyAV	CCTTC	4 cut(s)	186, 317, 754, 881
HpyCH4III	ACNGT	4 cut(s)	272, 515, 578, 846
HpyCH4V	TGCA	2 cut(s)	371, 850
HpyF3I	CTNAG	1 cut(s)	278
Hsp92II	CATG	3 cut(s)	829, 882, 906
Ksp22I	TGATCA	1 cut(s)	481
Kzo9I	GATC	5 cut(s)	331, 481, 527, 667, 804
LmnI	GCTCC	4 cut(s)	176, 182, 646, 667
Lsp1109I	GCAGC	2 cut(s)	691, 754
LweI	GCATC	1 cut(s)	802
MaeI	CTAG	2 cut(s)	360, 365
MalI	GATC	5 cut(s)	333, 483, 529, 669, 806
MbiI	CCGCTC	1 cut(s)	898
MboI	GATC	5 cut(s)	331, 481, 527, 667, 804
MboII	GAAGA	6 cut(s)	61, 64, 67, 441, 535, 814
MflI	RGATCY	1 cut(s)	667
MlsI	TGGCCA	1 cut(s)	768
MluCI	AATT	6 cut(s)	19, 61, 169, 209, 401, 545
MluNI	TGGCCA	1 cut(s)	768
MmeI	TCCRAC	1 cut(s)	486
Mox20I	TGGCCA	1 cut(s)	768
MroXI	GAANNNNTTC	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	768
MseI	TTAA	2 cut(s)	212, 919
Msp20I	TGGCCA	1 cut(s)	768
MspA1I	CMGCKG	1 cut(s)	398
Mva1269I	GAATGC	1 cut(s)	391
NcoI	CCATGG	1 cut(s)	825
NdeII	GATC	5 cut(s)	331, 481, 527, 667, 804
NlaIII	CATG	3 cut(s)	829, 882, 906
NlaIV	GGNNCC	4 cut(s)	307, 642, 663, 793
NspI	RCATGY	1 cut(s)	882
PctI	GAATGC	1 cut(s)	391
PdmI	GAANNNNTTC	1 cut(s)	65
PfeI	GAWTC	3 cut(s)	244, 296, 558
PflMI	CCANNNNNTGG	2 cut(s)	516, 650
PkrI	GCNGC	2 cut(s)	706, 744
PpuMI	RGGWCCY	1 cut(s)	781
Psp5II	RGGWCCY	1 cut(s)	781
PspN4I	GGNNCC	4 cut(s)	307, 642, 663, 793
PspPI	GGNCC	3 cut(s)	781, 791, 912
PspPPI	RGGWCCY	1 cut(s)	781
PstNI	CAGNNNCTG	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	667
PvuII	CAGCTG	1 cut(s)	398
RsaI	GTAC	1 cut(s)	680
RsaNI	GTAC	1 cut(s)	679
SaqAI	TTAA	2 cut(s)	212, 919
SatI	GCNGC	2 cut(s)	705, 743
Sau3AI	GATC	5 cut(s)	331, 481, 527, 667, 804
Sau96I	GGNCC	3 cut(s)	781, 791, 912
SfaNI	GCATC	1 cut(s)	802
SfcI	CTRYAG	1 cut(s)	271
SinI	GGWCC	3 cut(s)	781, 791, 912
SmlI	CTYRAG	1 cut(s)	746
SmoI	CTYRAG	1 cut(s)	746
SpeI	ACTAGT	1 cut(s)	364
Sse9I	AATT	6 cut(s)	19, 61, 169, 209, 401, 545
SsiI	CCGC	2 cut(s)	409, 896
SspMI	CTAG	2 cut(s)	360, 365
StyI	CCWWGG	2 cut(s)	309, 825
TaaI	ACNGT	4 cut(s)	272, 515, 578, 846
TasI	AATT	6 cut(s)	19, 61, 169, 209, 401, 545
TfiI	GAWTC	3 cut(s)	244, 296, 558
Tru1I	TTAA	2 cut(s)	212, 919
Tru9I	TTAA	2 cut(s)	212, 919
TscAI	CASTG	2 cut(s)	41, 192
TseI	GCWGC	2 cut(s)	704, 742
TspDTI	ATGAA	1 cut(s)	594
TspGWI	ACGGA	2 cut(s)	738, 776
TspRI	CASTG	2 cut(s)	41, 192
Van91I	CCANNNNNTGG	2 cut(s)	516, 650
VpaK11BI	GGWCC	3 cut(s)	781, 791, 912
XapI	RAATTY	2 cut(s)	61, 169
XceI	RCATGY	1 cut(s)	882
XmiI	GTMKAC	1 cut(s)	356
XmnI	GAANNNNTTC	1 cut(s)	65
XspI	CTAG	2 cut(s)	360, 365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.