Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004479

Physical Location & Seq

Genomic Coordinates Forward (+)

88240299 .. 88243320

Gene Structure 3022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG670400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGAGCCATGCTTCTTATCTCACAGTTTGCAAGGCTTTGAATTTTGGAGCAAGACCACTGCGAAGATCATCAAATTTTTCTTTCAAGTTGCCCCAAAAGGTTTTTGTTAGGCGGATTCAAATGGCAGATAATAGTCACAACTGTAGCCTAAGAGGCAAGGAGGATTCAAGAGGTGCATTGGTTGTTTTGGAAGGCTTGGATCGTTGTGGGAAGACTACACAGTCTACTAGACTAGTAAAACACTTAGAAAGTTTAGGGTATTCAACGGAATTATGGAGGTATCCTGACAGGACTACAAGTGTTGGGCAAATGATATCTTCTTATCTTTCGAACAAATCGCAACTGGATGATCGTACTATCCATCTTCTCTTCAGTGCCAACCGGTGGGAGAAGAGATCATTGATGGAAACTAAATTGAAAAGTGGAACCACTCTTGTCGTTGACCGGTATTCTTATTCTGGGGTGGCTTTCTCATCTGCCAAAGGACTGGACATGGAATGGTGTAAGGCTCCTGAGATTGGGTTGTTGGCTCCAGATGTTGTTCTGTACCTTGACATACCACCTGAGAAAGCTGCAGAAAGAGGGGGCTATGGAGGTGAGAGATATGAGCAGCTTGAATTTCAGAAGAAAGTTGGCCAAAGATATAAGGACCTCCGCAGTGCCAATTGGAAGGTCATAGATGCTTGTTCAACCATGGAGGAAGTTGAGAAGCAGTTGCAAGAGATAGTGTTGGATTGTGTAAAGACATGCCAAGAAGGAAAACCCCTCTCATGTCTCTGGTCCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004798 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006139 GO:0006220 GO:0006221 GO:0006227 GO:0006233 GO:0006235 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009041 GO:0009058 GO:0009117 GO:0009123 GO:0009132 GO:0009133 GO:0009138 GO:0009139 GO:0009141 GO:0009142 GO:0009147 GO:0009148 GO:0009165 GO:0009186 GO:0009189 GO:0009196 GO:0009197 GO:0009200 GO:0009202 GO:0009211 GO:0009212 GO:0009219 GO:0009221 GO:0009262 GO:0009263 GO:0009265 GO:0009394 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0019692 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046072 GO:0046075 GO:0046077 GO:0046385 GO:0046483 GO:0046940 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050145 GO:0055086 GO:0061458 GO:0070013 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

Thymidylate_kin

Protein Analysis

262

Amino Acids

29.71

Weight (kDa)

8.98

Isoelectric Point (pI)

42.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thymidylate_kin	PF02223	63 - 238	1.8e-46	Thymidylate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59440 AT5G59440 AT5G59440
fragaria_vesca	FvH4_6g52930 FvH4_6g52930 FvH4_6g52930 FvH4_6g52930
malus_domestica	MD09G1015900.v1.1 MD17G1016300.v1.1
prunus_persica	Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G301400_v2.0.a1 Prupe.3G301400_v2.0.a1
pyrus_communis	pycom111g01300 pycom17g01320
rosa_chinensis	RchiOBHm_Chr2g0174641
rosa_laevigata	RLG00000022279
rosa_multiflora	Rmu_sc0007189.1_g000008
rosa_roxburghii	Rroxscaffold_2G00077980
rosa_rugosa	Rorug02G0578500 Rorug02G0578500 Rorug02G0578500
rosa_samantha	Rh2AG659600 Rh2BG670400 Rh2CG633700 Rh2DG684100
rosa_wichuraiana	Rw2G054020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	220
AccB7I	CCANNNNNTGG	1 cut(s)	384
AccI	GTMKAC	1 cut(s)	224
AciI	CCGC	2 cut(s)	112, 655
AclWI	GGATC	1 cut(s)	207
AcoI	YGGCCR	1 cut(s)	634
AcsI	RAATTY	3 cut(s)	40, 73, 617
AcuI	CTGAAG	1 cut(s)	355
AfaI	GTAC	2 cut(s)	355, 548
AfiI	CCNNNNNNNGG	2 cut(s)	384, 518
AgeI	ACCGGT	2 cut(s)	381, 444
AgsI	TTSAA	8 cut(s)	40, 85, 119, 168, 264, 418, 617, 690
AhlI	ACTAGT	1 cut(s)	232
AluBI	AGCT	2 cut(s)	572, 613
AluI	AGCT	2 cut(s)	572, 613
Alw26I	GTCTC	1 cut(s)	779
AlwI	GGATC	1 cut(s)	207
AoxI	GGCC	1 cut(s)	634
ApeKI	GCWGC	2 cut(s)	572, 610
ApoI	RAATTY	3 cut(s)	40, 73, 617
AsiGI	ACCGGT	2 cut(s)	381, 444
AspS9I	GGNCC	2 cut(s)	649, 780
AsuHPI	GGTGA	1 cut(s)	608
AsuII	TTCGAA	1 cut(s)	329
AvaII	GGWCC	2 cut(s)	649, 780
BalI	TGGCCA	1 cut(s)	636
BbsI	GAAGAC	1 cut(s)	218
BbvI	GCAGC	2 cut(s)	559, 622
BccI	CCATC	2 cut(s)	369, 397
BciVI	GTATCC	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	779
BcuI	ACTAGT	1 cut(s)	232
BfaI	CTAG	2 cut(s)	228, 233
BfmI	CTRYAG	2 cut(s)	142, 573
BfuI	GTATCC	1 cut(s)	291
BglI	GCCNNNNNGGC	1 cut(s)	153
BisI	GCNGC	2 cut(s)	573, 611
BlsI	GCNGC	2 cut(s)	574, 612
Bme18I	GGWCC	2 cut(s)	649, 780
BmgT120I	GGNCC	2 cut(s)	649, 780
BmiI	GGNNCC	3 cut(s)	427, 510, 531
BmsI	GCATC	1 cut(s)	670
BpiI	GAAGAC	1 cut(s)	218
BpmI	CTGGAG	1 cut(s)	516
Bpu14I	TTCGAA	1 cut(s)	329
BsaJI	CCNNGG	1 cut(s)	693
BsaWI	WCCGGW	2 cut(s)	381, 444
Bsc4I	CCNNNNNNNGG	2 cut(s)	384, 518
Bse118I	RCCGGY	2 cut(s)	381, 444
Bse1I	ACTGG	2 cut(s)	348, 492
BseDI	CCNNGG	1 cut(s)	693
BseGI	GGATG	1 cut(s)	352
BseLI	CCNNNNNNNGG	2 cut(s)	384, 518
BseMII	CTCAG	2 cut(s)	504, 555
BseNI	ACTGG	2 cut(s)	348, 492
BseXI	GCAGC	2 cut(s)	559, 622
BshFI	GGCC	1 cut(s)	636
BshTI	ACCGGT	2 cut(s)	381, 444
BsiSI	CCGG	2 cut(s)	382, 445
BslI	CCNNNNNNNGG	2 cut(s)	384, 518
BsmAI	GTCTC	1 cut(s)	779
BsnI	GGCC	1 cut(s)	636
Bsp119I	TTCGAA	1 cut(s)	329
Bsp143I	GATC	4 cut(s)	65, 199, 349, 395
Bsp19I	CCATGG	1 cut(s)	693
BspACI	CCGC	2 cut(s)	112, 655
BspANI	GGCC	1 cut(s)	636
BspCNI	CTCAG	2 cut(s)	505, 556
BspLI	GGNNCC	3 cut(s)	427, 510, 531
BspMAI	CTGCAG	1 cut(s)	577
BspPI	GGATC	1 cut(s)	207
BspT104I	TTCGAA	1 cut(s)	329
BsrFI	RCCGGY	2 cut(s)	381, 444
BsrI	ACTGG	2 cut(s)	348, 492
BssAI	RCCGGY	2 cut(s)	381, 444
BssECI	CCNNGG	1 cut(s)	693
BssMI	GATC	4 cut(s)	65, 199, 349, 395
BssT1I	CCWWGG	1 cut(s)	693
Bst4CI	ACNGT	3 cut(s)	25, 143, 222
Bst6I	CTCTTC	2 cut(s)	374, 386
BstBI	TTCGAA	1 cut(s)	329
BstDEI	CTNAG	4 cut(s)	149, 244, 513, 564
BstDSI	CCRYGG	1 cut(s)	693
BstF5I	GGATG	1 cut(s)	352
BstKTI	GATC	4 cut(s)	68, 202, 352, 398
BstMAI	GTCTC	1 cut(s)	779
BstMBI	GATC	4 cut(s)	65, 199, 349, 395
BstMWI	GCNNNNNNNGC	1 cut(s)	153
BstNSI	RCATGY	1 cut(s)	750
BstSFI	CTRYAG	2 cut(s)	142, 573
BstV1I	GCAGC	2 cut(s)	559, 622
BstV2I	GAAGAC	1 cut(s)	218
BstXI	CCANNNNNNTGG	1 cut(s)	487
BsuI	GTATCC	1 cut(s)	291
BsuRI	GGCC	1 cut(s)	636
BtgI	CCRYGG	1 cut(s)	693
BtsCI	GGATG	1 cut(s)	352
BtsI	GCAGTG	2 cut(s)	56, 664
BtsIMutI	CAGTG	3 cut(s)	56, 379, 664
Cfr10I	RCCGGY	2 cut(s)	381, 444
Cfr13I	GGNCC	2 cut(s)	649, 780
Csp6I	GTAC	2 cut(s)	354, 547
CspAI	ACCGGT	2 cut(s)	381, 444
CviAII	CATG	5 cut(s)	8, 493, 694, 747, 771
CviQI	GTAC	2 cut(s)	354, 547
DdeI	CTNAG	4 cut(s)	149, 244, 513, 564
DpnI	GATC	4 cut(s)	67, 201, 351, 397
DpnII	GATC	4 cut(s)	65, 199, 349, 395
DrdI	GACNNNNNNGTC	1 cut(s)	220
DseDI	GACNNNNNNGTC	1 cut(s)	220
EaeI	YGGCCR	1 cut(s)	634
Eam1104I	CTCTTC	2 cut(s)	374, 386
EarI	CTCTTC	2 cut(s)	374, 386
EciI	GGCGGA	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	693
Eco32I	GATATC	1 cut(s)	315
Eco47I	GGWCC	2 cut(s)	649, 780
Eco57I	CTGAAG	1 cut(s)	355
EcoO109I	RGGNCCY	1 cut(s)	649
EcoRV	GATATC	1 cut(s)	315
EcoT14I	CCWWGG	1 cut(s)	693
ErhI	CCWWGG	1 cut(s)	693
FaeI	CATG	5 cut(s)	11, 496, 697, 750, 774
FatI	CATG	5 cut(s)	7, 492, 693, 746, 770
FblI	GTMKAC	1 cut(s)	224
Fnu4HI	GCNGC	2 cut(s)	573, 611
FokI	GGATG	1 cut(s)	359
Fsp4HI	GCNGC	2 cut(s)	573, 611
FspBI	CTAG	2 cut(s)	228, 233
GluI	GCNGC	2 cut(s)	573, 611
GsuI	CTGGAG	1 cut(s)	516
HaeIII	GGCC	1 cut(s)	636
HapII	CCGG	2 cut(s)	382, 445
Hin1II	CATG	5 cut(s)	11, 496, 697, 750, 774
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HinfI	GANTC	2 cut(s)	115, 164
HpaII	CCGG	2 cut(s)	382, 445
HphI	GGTGA	1 cut(s)	608
Hpy166II	GTNNAC	2 cut(s)	225, 442
Hpy188I	TCNGA	1 cut(s)	624
Hpy188III	TCNNGA	4 cut(s)	168, 284, 512, 533
Hpy8I	GTNNAC	2 cut(s)	225, 442
HpyAV	CCTTC	3 cut(s)	185, 664, 749
HpyCH4III	ACNGT	3 cut(s)	25, 143, 222
HpyCH4V	TGCA	4 cut(s)	30, 176, 575, 718
HpyF10VI	GCNNNNNNNGC	1 cut(s)	153
HpyF3I	CTNAG	4 cut(s)	149, 244, 513, 564
Hsp92II	CATG	5 cut(s)	11, 496, 697, 750, 774
Kzo9I	GATC	4 cut(s)	65, 199, 349, 395
LmnI	GCTCC	3 cut(s)	47, 514, 535
Lsp1109I	GCAGC	2 cut(s)	559, 622
LweI	GCATC	1 cut(s)	670
MaeI	CTAG	2 cut(s)	228, 233
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	4 cut(s)	67, 201, 351, 397
MboI	GATC	4 cut(s)	65, 199, 349, 395
MboII	GAAGA	7 cut(s)	75, 223, 309, 356, 361, 403, 637
MfeI	CAATTG	1 cut(s)	664
MlsI	TGGCCA	1 cut(s)	636
MluCI	AATT	6 cut(s)	40, 73, 269, 413, 617, 664
MluNI	TGGCCA	1 cut(s)	636
MmeI	TCCRAC	1 cut(s)	711
MnlI	CCTC	9 cut(s)	146, 154, 164, 270, 575, 587, 662, 691, 776
Mox20I	TGGCCA	1 cut(s)	636
MscI	TGGCCA	1 cut(s)	636
MseI	TTAA	1 cut(s)	787
Msp20I	TGGCCA	1 cut(s)	636
MspI	CCGG	2 cut(s)	382, 445
MunI	CAATTG	1 cut(s)	664
MwoI	GCNNNNNNNGC	1 cut(s)	153
NcoI	CCATGG	1 cut(s)	693
NdeII	GATC	4 cut(s)	65, 199, 349, 395
NlaIII	CATG	5 cut(s)	11, 496, 697, 750, 774
NlaIV	GGNNCC	3 cut(s)	427, 510, 531
NmuCI	GTSAC	1 cut(s)	134
NspI	RCATGY	1 cut(s)	750
NspV	TTCGAA	1 cut(s)	329
PfeI	GAWTC	2 cut(s)	115, 164
PflMI	CCANNNNNTGG	1 cut(s)	384
PinAI	ACCGGT	2 cut(s)	381, 444
PkrI	GCNGC	2 cut(s)	574, 612
PpuMI	RGGWCCY	1 cut(s)	649
Psp5II	RGGWCCY	1 cut(s)	649
PspN4I	GGNNCC	3 cut(s)	427, 510, 531
PspPI	GGNCC	2 cut(s)	649, 780
PspPPI	RGGWCCY	1 cut(s)	649
PstI	CTGCAG	1 cut(s)	577
RsaI	GTAC	2 cut(s)	355, 548
RsaNI	GTAC	2 cut(s)	354, 547
SaqAI	TTAA	1 cut(s)	787
SatI	GCNGC	2 cut(s)	573, 611
Sau3AI	GATC	4 cut(s)	65, 199, 349, 395
Sau96I	GGNCC	2 cut(s)	649, 780
SfaNI	GCATC	1 cut(s)	670
SfcI	CTRYAG	2 cut(s)	142, 573
SfuI	TTCGAA	1 cut(s)	329
SinI	GGWCC	2 cut(s)	649, 780
SpeI	ACTAGT	1 cut(s)	232
Sse9I	AATT	6 cut(s)	40, 73, 269, 413, 617, 664
SsiI	CCGC	2 cut(s)	112, 655
SspMI	CTAG	2 cut(s)	228, 233
StyI	CCWWGG	1 cut(s)	693
TaaI	ACNGT	3 cut(s)	25, 143, 222
TaqI	TCGA	1 cut(s)	329
TasI	AATT	6 cut(s)	40, 73, 269, 413, 617, 664
TfiI	GAWTC	2 cut(s)	115, 164
Tru1I	TTAA	1 cut(s)	787
Tru9I	TTAA	1 cut(s)	787
TscAI	CASTG	3 cut(s)	63, 379, 664
TseFI	GTSAC	1 cut(s)	134
TseI	GCWGC	2 cut(s)	572, 610
Tsp45I	GTSAC	1 cut(s)	134
TspGWI	ACGGA	1 cut(s)	281
TspRI	CASTG	3 cut(s)	63, 379, 664
Van91I	CCANNNNNTGG	1 cut(s)	384
VpaK11BI	GGWCC	2 cut(s)	649, 780
XapI	RAATTY	3 cut(s)	40, 73, 617
XceI	RCATGY	1 cut(s)	750
XmiI	GTMKAC	1 cut(s)	224
XspI	CTAG	2 cut(s)	228, 233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.