Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0004479

Physical Location & Seq

Genomic Coordinates Forward (+)

87546753 .. 87550530

Gene Structure 3778 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG659600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGATAGACTGCTTTTGTTTCTCCAGGAATTTTGGAGCAAGACCACTGCGAAGATCATCAAATTTTTCTTTCAAGTTGCCCCAAAAGGTTTTTGTTAGGCGGATTCAAATGGCAGATAATAGTCACAACTGTAGCCTAAGAGGCAAGGAGGATTCAAGAGGTGCATTGGTTGTTTTGGAAGGCTTGGATCGTTGTGGGAAGACTACACAGTCTACTAGACTAGTAAAACACTTAGAAAGTTTAGGGTATTCAACGGAATTATGGAGGTATCCTGACAGGACTACAAGTGTTGGGCAAATGATATCTTCTTATCTTTCGAACAAATCGCAACTGGATGATCGTACTATCCATCTTCTCTTCAGTGCCAACCGGTGGGAGAAGAGATCATTGATGGAAACTAAATTGAAAAGTGGAACCACTCTTGTCGTTGACCGGTATTCTTATTCTGGGGTGGCTTTCTCATCTGCCAAAGGACTGGACATGGAATGGTGTAAGGCTCCTGAGATTGGGTTGTTGGCTCCAGATGTTGTTCTGTACCTTGACATACCACCTGAGAAAGCTGCAGAAAGAGGGGGCTATGGAGGTGAGAGATATGAGCAGCTTGAATTTCAGAAGAAAGTTGGCCAAAGATATAAGGACCTCCGCAGTGCCAATTGGAAGGTCATAGATGCTTGTTCAACCATGGAGGAAGTTGAGAAGCAGTTGCAAGAGATAGTGTTGGATTGTGTAAAGACATGCCAAGAAGGAAAACCCCTCTCATGTCTCTGGTCCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004798 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006139 GO:0006220 GO:0006221 GO:0006227 GO:0006233 GO:0006235 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009041 GO:0009058 GO:0009117 GO:0009123 GO:0009132 GO:0009133 GO:0009138 GO:0009139 GO:0009141 GO:0009142 GO:0009147 GO:0009148 GO:0009165 GO:0009186 GO:0009189 GO:0009196 GO:0009197 GO:0009200 GO:0009202 GO:0009211 GO:0009212 GO:0009219 GO:0009221 GO:0009262 GO:0009263 GO:0009265 GO:0009394 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0019692 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046072 GO:0046075 GO:0046077 GO:0046385 GO:0046483 GO:0046940 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050145 GO:0055086 GO:0061458 GO:0070013 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

Thymidylate_kin

Protein Analysis

258

Amino Acids

29.41

Weight (kDa)

8.85

Isoelectric Point (pI)

42.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thymidylate_kin	PF02223	59 - 234	1.7e-46	Thymidylate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59440 AT5G59440 AT5G59440
fragaria_vesca	FvH4_6g52930 FvH4_6g52930 FvH4_6g52930 FvH4_6g52930
malus_domestica	MD09G1015900.v1.1 MD17G1016300.v1.1
prunus_persica	Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G301400_v2.0.a1 Prupe.3G301400_v2.0.a1
pyrus_communis	pycom111g01300 pycom17g01320
rosa_chinensis	RchiOBHm_Chr2g0174641
rosa_laevigata	RLG00000022279
rosa_multiflora	Rmu_sc0007189.1_g000008
rosa_roxburghii	Rroxscaffold_2G00077980
rosa_rugosa	Rorug02G0578500 Rorug02G0578500 Rorug02G0578500
rosa_samantha	Rh2AG659600 Rh2BG670400 Rh2CG633700 Rh2DG684100
rosa_wichuraiana	Rw2G054020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	208
AccB7I	CCANNNNNTGG	1 cut(s)	372
AccI	GTMKAC	1 cut(s)	212
AciI	CCGC	2 cut(s)	100, 643
AclWI	GGATC	1 cut(s)	195
AcoI	YGGCCR	1 cut(s)	622
AcsI	RAATTY	3 cut(s)	28, 61, 605
AcuI	CTGAAG	1 cut(s)	343
AfaI	GTAC	2 cut(s)	343, 536
AfiI	CCNNNNNNNGG	2 cut(s)	372, 506
AgeI	ACCGGT	2 cut(s)	369, 432
AgsI	TTSAA	7 cut(s)	73, 107, 156, 252, 406, 605, 678
AhlI	ACTAGT	1 cut(s)	220
AjnI	CCWGG	1 cut(s)	23
AluBI	AGCT	2 cut(s)	560, 601
AluI	AGCT	2 cut(s)	560, 601
Alw26I	GTCTC	1 cut(s)	767
AlwI	GGATC	1 cut(s)	195
AoxI	GGCC	1 cut(s)	622
ApeKI	GCWGC	2 cut(s)	560, 598
ApoI	RAATTY	3 cut(s)	28, 61, 605
AsiGI	ACCGGT	2 cut(s)	369, 432
AspS9I	GGNCC	2 cut(s)	637, 768
AsuHPI	GGTGA	1 cut(s)	596
AsuII	TTCGAA	1 cut(s)	317
AvaII	GGWCC	2 cut(s)	637, 768
BalI	TGGCCA	1 cut(s)	624
BbsI	GAAGAC	1 cut(s)	206
BbvI	GCAGC	2 cut(s)	547, 610
BccI	CCATC	2 cut(s)	357, 385
BciT130I	CCWGG	1 cut(s)	25
BciVI	GTATCC	1 cut(s)	279
BcoDI	GTCTC	1 cut(s)	767
BcuI	ACTAGT	1 cut(s)	220
BfaI	CTAG	2 cut(s)	216, 221
BfmI	CTRYAG	2 cut(s)	130, 561
BfuI	GTATCC	1 cut(s)	279
BglI	GCCNNNNNGGC	1 cut(s)	141
BisI	GCNGC	2 cut(s)	561, 599
BlsI	GCNGC	2 cut(s)	562, 600
Bme1390I	CCNGG	1 cut(s)	25
Bme18I	GGWCC	2 cut(s)	637, 768
BmgT120I	GGNCC	2 cut(s)	637, 768
BmiI	GGNNCC	3 cut(s)	415, 498, 519
BmrFI	CCNGG	1 cut(s)	25
BmsI	GCATC	1 cut(s)	658
BpiI	GAAGAC	1 cut(s)	206
BpmI	CTGGAG	2 cut(s)	7, 504
Bpu14I	TTCGAA	1 cut(s)	317
BsaJI	CCNNGG	1 cut(s)	681
BsaWI	WCCGGW	2 cut(s)	369, 432
Bsc4I	CCNNNNNNNGG	2 cut(s)	372, 506
Bse118I	RCCGGY	2 cut(s)	369, 432
Bse1I	ACTGG	2 cut(s)	336, 480
BseBI	CCWGG	1 cut(s)	25
BseDI	CCNNGG	1 cut(s)	681
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	2 cut(s)	372, 506
BseMII	CTCAG	2 cut(s)	492, 543
BseNI	ACTGG	2 cut(s)	336, 480
BseXI	GCAGC	2 cut(s)	547, 610
BshFI	GGCC	1 cut(s)	624
BshTI	ACCGGT	2 cut(s)	369, 432
BsiSI	CCGG	2 cut(s)	370, 433
BslI	CCNNNNNNNGG	2 cut(s)	372, 506
BsmAI	GTCTC	1 cut(s)	767
BsnI	GGCC	1 cut(s)	624
Bsp119I	TTCGAA	1 cut(s)	317
Bsp143I	GATC	4 cut(s)	53, 187, 337, 383
Bsp19I	CCATGG	1 cut(s)	681
BspACI	CCGC	2 cut(s)	100, 643
BspANI	GGCC	1 cut(s)	624
BspCNI	CTCAG	2 cut(s)	493, 544
BspLI	GGNNCC	3 cut(s)	415, 498, 519
BspMAI	CTGCAG	1 cut(s)	565
BspPI	GGATC	1 cut(s)	195
BspT104I	TTCGAA	1 cut(s)	317
BsrFI	RCCGGY	2 cut(s)	369, 432
BsrI	ACTGG	2 cut(s)	336, 480
BssAI	RCCGGY	2 cut(s)	369, 432
BssECI	CCNNGG	1 cut(s)	681
BssMI	GATC	4 cut(s)	53, 187, 337, 383
BssT1I	CCWWGG	1 cut(s)	681
Bst2UI	CCWGG	1 cut(s)	25
Bst4CI	ACNGT	2 cut(s)	131, 210
Bst6I	CTCTTC	2 cut(s)	362, 374
BstBI	TTCGAA	1 cut(s)	317
BstDEI	CTNAG	4 cut(s)	137, 232, 501, 552
BstDSI	CCRYGG	1 cut(s)	681
BstF5I	GGATG	1 cut(s)	340
BstKTI	GATC	4 cut(s)	56, 190, 340, 386
BstMAI	GTCTC	1 cut(s)	767
BstMBI	GATC	4 cut(s)	53, 187, 337, 383
BstMWI	GCNNNNNNNGC	1 cut(s)	141
BstNI	CCWGG	1 cut(s)	25
BstNSI	RCATGY	1 cut(s)	738
BstSCI	CCNGG	1 cut(s)	23
BstSFI	CTRYAG	2 cut(s)	130, 561
BstV1I	GCAGC	2 cut(s)	547, 610
BstV2I	GAAGAC	1 cut(s)	206
BstXI	CCANNNNNNTGG	1 cut(s)	475
BsuI	GTATCC	1 cut(s)	279
BsuRI	GGCC	1 cut(s)	624
BtgI	CCRYGG	1 cut(s)	681
BtsCI	GGATG	1 cut(s)	340
BtsI	GCAGTG	2 cut(s)	44, 652
BtsIMutI	CAGTG	3 cut(s)	44, 367, 652
Cfr10I	RCCGGY	2 cut(s)	369, 432
Cfr13I	GGNCC	2 cut(s)	637, 768
Csp6I	GTAC	2 cut(s)	342, 535
CspAI	ACCGGT	2 cut(s)	369, 432
CviAII	CATG	4 cut(s)	481, 682, 735, 759
CviJI	RGCY	9 cut(s)	135, 183, 455, 497, 518, 560, 576, 601, 624
CviKI_1	RGCY	9 cut(s)	135, 183, 455, 497, 518, 560, 576, 601, 624
CviQI	GTAC	2 cut(s)	342, 535
DdeI	CTNAG	4 cut(s)	137, 232, 501, 552
DpnI	GATC	4 cut(s)	55, 189, 339, 385
DpnII	GATC	4 cut(s)	53, 187, 337, 383
DrdI	GACNNNNNNGTC	1 cut(s)	208
DseDI	GACNNNNNNGTC	1 cut(s)	208
EaeI	YGGCCR	1 cut(s)	622
Eam1104I	CTCTTC	2 cut(s)	362, 374
EarI	CTCTTC	2 cut(s)	362, 374
EciI	GGCGGA	1 cut(s)	115
Eco130I	CCWWGG	1 cut(s)	681
Eco32I	GATATC	1 cut(s)	303
Eco47I	GGWCC	2 cut(s)	637, 768
Eco57I	CTGAAG	1 cut(s)	343
EcoO109I	RGGNCCY	1 cut(s)	637
EcoRII	CCWGG	1 cut(s)	23
EcoRV	GATATC	1 cut(s)	303
EcoT14I	CCWWGG	1 cut(s)	681
ErhI	CCWWGG	1 cut(s)	681
FaeI	CATG	4 cut(s)	484, 685, 738, 762
FatI	CATG	4 cut(s)	480, 681, 734, 758
FblI	GTMKAC	1 cut(s)	212
Fnu4HI	GCNGC	2 cut(s)	561, 599
FokI	GGATG	1 cut(s)	347
Fsp4HI	GCNGC	2 cut(s)	561, 599
FspBI	CTAG	2 cut(s)	216, 221
GluI	GCNGC	2 cut(s)	561, 599
GsuI	CTGGAG	2 cut(s)	7, 504
HaeIII	GGCC	1 cut(s)	624
HapII	CCGG	2 cut(s)	370, 433
Hin1II	CATG	4 cut(s)	484, 685, 738, 762
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HinfI	GANTC	2 cut(s)	103, 152
HpaII	CCGG	2 cut(s)	370, 433
HphI	GGTGA	1 cut(s)	596
Hpy166II	GTNNAC	2 cut(s)	213, 430
Hpy188I	TCNGA	1 cut(s)	612
Hpy188III	TCNNGA	4 cut(s)	156, 272, 500, 521
Hpy8I	GTNNAC	2 cut(s)	213, 430
HpyAV	CCTTC	3 cut(s)	173, 652, 737
HpyCH4III	ACNGT	2 cut(s)	131, 210
HpyCH4V	TGCA	3 cut(s)	164, 563, 706
HpyF10VI	GCNNNNNNNGC	1 cut(s)	141
HpyF3I	CTNAG	4 cut(s)	137, 232, 501, 552
Hsp92II	CATG	4 cut(s)	484, 685, 738, 762
Kzo9I	GATC	4 cut(s)	53, 187, 337, 383
LmnI	GCTCC	3 cut(s)	35, 502, 523
Lsp1109I	GCAGC	2 cut(s)	547, 610
LweI	GCATC	1 cut(s)	658
MaeI	CTAG	2 cut(s)	216, 221
MaeIII	GTNAC	1 cut(s)	122
MalI	GATC	4 cut(s)	55, 189, 339, 385
MboI	GATC	4 cut(s)	53, 187, 337, 383
MboII	GAAGA	7 cut(s)	63, 211, 297, 344, 349, 391, 625
MfeI	CAATTG	1 cut(s)	652
MlsI	TGGCCA	1 cut(s)	624
MluCI	AATT	6 cut(s)	28, 61, 257, 401, 605, 652
MluNI	TGGCCA	1 cut(s)	624
MmeI	TCCRAC	1 cut(s)	699
MnlI	CCTC	9 cut(s)	134, 142, 152, 258, 563, 575, 650, 679, 764
Mox20I	TGGCCA	1 cut(s)	624
MscI	TGGCCA	1 cut(s)	624
MseI	TTAA	1 cut(s)	775
Msp20I	TGGCCA	1 cut(s)	624
MspI	CCGG	2 cut(s)	370, 433
MspR9I	CCNGG	1 cut(s)	25
MunI	CAATTG	1 cut(s)	652
MvaI	CCWGG	1 cut(s)	25
MwoI	GCNNNNNNNGC	1 cut(s)	141
NcoI	CCATGG	1 cut(s)	681
NdeII	GATC	4 cut(s)	53, 187, 337, 383
NlaIII	CATG	4 cut(s)	484, 685, 738, 762
NlaIV	GGNNCC	3 cut(s)	415, 498, 519
NmuCI	GTSAC	1 cut(s)	122
NspI	RCATGY	1 cut(s)	738
NspV	TTCGAA	1 cut(s)	317
PfeI	GAWTC	2 cut(s)	103, 152
PflMI	CCANNNNNTGG	1 cut(s)	372
PfoI	TCCNGGA	1 cut(s)	23
PinAI	ACCGGT	2 cut(s)	369, 432
PkrI	GCNGC	2 cut(s)	562, 600
PpuMI	RGGWCCY	1 cut(s)	637
Psp5II	RGGWCCY	1 cut(s)	637
Psp6I	CCWGG	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	23
PspN4I	GGNNCC	3 cut(s)	415, 498, 519
PspPI	GGNCC	2 cut(s)	637, 768
PspPPI	RGGWCCY	1 cut(s)	637
PstI	CTGCAG	1 cut(s)	565
RsaI	GTAC	2 cut(s)	343, 536
RsaNI	GTAC	2 cut(s)	342, 535
SaqAI	TTAA	1 cut(s)	775
SatI	GCNGC	2 cut(s)	561, 599
Sau3AI	GATC	4 cut(s)	53, 187, 337, 383
Sau96I	GGNCC	2 cut(s)	637, 768
ScrFI	CCNGG	1 cut(s)	25
SfaNI	GCATC	1 cut(s)	658
SfcI	CTRYAG	2 cut(s)	130, 561
SfuI	TTCGAA	1 cut(s)	317
SinI	GGWCC	2 cut(s)	637, 768
SpeI	ACTAGT	1 cut(s)	220
Sse9I	AATT	6 cut(s)	28, 61, 257, 401, 605, 652
SsiI	CCGC	2 cut(s)	100, 643
SspMI	CTAG	2 cut(s)	216, 221
StyD4I	CCNGG	1 cut(s)	23
StyI	CCWWGG	1 cut(s)	681
TaaI	ACNGT	2 cut(s)	131, 210
TaqI	TCGA	1 cut(s)	317
TasI	AATT	6 cut(s)	28, 61, 257, 401, 605, 652
TfiI	GAWTC	2 cut(s)	103, 152
Tru1I	TTAA	1 cut(s)	775
Tru9I	TTAA	1 cut(s)	775
TscAI	CASTG	3 cut(s)	51, 367, 652
TseFI	GTSAC	1 cut(s)	122
TseI	GCWGC	2 cut(s)	560, 598
Tsp45I	GTSAC	1 cut(s)	122
TspGWI	ACGGA	1 cut(s)	269
TspRI	CASTG	3 cut(s)	51, 367, 652
Van91I	CCANNNNNTGG	1 cut(s)	372
VpaK11BI	GGWCC	2 cut(s)	637, 768
XapI	RAATTY	3 cut(s)	28, 61, 605
XceI	RCATGY	1 cut(s)	738
XmiI	GTMKAC	1 cut(s)	212
XspI	CTAG	2 cut(s)	216, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.