Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0004479

Physical Location & Seq

Genomic Coordinates Reverse (-)

831730 .. 833635

Gene Structure 1906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g01300.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGAAGGTAAAAATCAGAACTGTAGCCTAAGAGGTGGAAAGGAGGATTCAAGAGGTGCCTTGGTTGTTCTTGAAGGCTTGGATCGGTGTGGGAAGACGACACAGTCTGCTAGACTAGTCACAAACTCGGAGAGGTTAGGATATTCAGCTGAGTTGTGGCTGTTTCCTGACAGAACTACTAGTGTTGGGAAAATGATATCTTCATATCTTTCCAACGAATCACAACTGGACAATCATACAATCCATCTACTCTTTAGTGCCAGCCGTTGGGAGAAGAGATCGTTGATGGAAAGCAAATTGAAAAGTGGAACCACTCTTGTTGTTGACCGTTATTCTTATTCGGGGGTGGCCTTTTCATCTGCCAAAGGACTTGATATCGAATGGTGTAAGGCTCCGGAGATTGGGCTATTGGCTCCAGATCTTGTAGTGTACCTTGACATACCCCCTGAAAAAGCTGCCGAAAGAGGAGGCTATGGAGGTGAGAGATACGAGCAGCTTGAGTTTCAGAAGAAGGTTGGTCACAACTATCAGGTCCTCTGCAGTCCCACTTGGAAGATCATAGATGCCTGTTCATCCATGGAGGACGTCGAGGAACAGTTGCAAGAGATGGTACTTGACTGTATAAAAACATGCCGAGAAGGGAAACCCCTCTCATGTCTCTGGTCTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004798 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006139 GO:0006220 GO:0006221 GO:0006227 GO:0006233 GO:0006235 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009041 GO:0009058 GO:0009117 GO:0009123 GO:0009132 GO:0009133 GO:0009138 GO:0009139 GO:0009141 GO:0009142 GO:0009147 GO:0009148 GO:0009165 GO:0009186 GO:0009189 GO:0009196 GO:0009197 GO:0009200 GO:0009202 GO:0009211 GO:0009212 GO:0009219 GO:0009221 GO:0009262 GO:0009263 GO:0009265 GO:0009394 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0019692 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046072 GO:0046075 GO:0046077 GO:0046385 GO:0046483 GO:0046940 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050145 GO:0055086 GO:0061458 GO:0070013 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

Thymidylate_kin

Protein Analysis

224

Amino Acids

24.87

Weight (kDa)

5.54

Isoelectric Point (pI)

39.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59440 AT5G59440 AT5G59440
fragaria_vesca	FvH4_6g52930 FvH4_6g52930 FvH4_6g52930 FvH4_6g52930
malus_domestica	MD09G1015900.v1.1 MD17G1016300.v1.1
prunus_persica	Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G071800_v2.0.a1 Prupe.3G301400_v2.0.a1 Prupe.3G301400_v2.0.a1
pyrus_communis	pycom111g01300 pycom17g01320
rosa_chinensis	RchiOBHm_Chr2g0174641
rosa_laevigata	RLG00000022279
rosa_multiflora	Rmu_sc0007189.1_g000008
rosa_roxburghii	Rroxscaffold_2G00077980
rosa_rugosa	Rorug02G0578500 Rorug02G0578500 Rorug02G0578500
rosa_samantha	Rh2AG659600 Rh2BG670400 Rh2CG633700 Rh2DG684100
rosa_wichuraiana	Rw2G054020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	103
AatII	GACGTC	1 cut(s)	588
AccB1I	GGYRCC	1 cut(s)	56
AccB7I	CCANNNNNTGG	1 cut(s)	267
AccIII	TCCGGA	1 cut(s)	394
AclWI	GGATC	1 cut(s)	90
AcyI	GRCGYC	1 cut(s)	585
AfaI	GTAC	2 cut(s)	431, 612
AfiI	CCNNNNNNNGG	2 cut(s)	267, 401
AgsI	TTSAA	3 cut(s)	51, 74, 301
AhlI	ACTAGT	2 cut(s)	115, 179
AluBI	AGCT	3 cut(s)	149, 455, 496
AluI	AGCT	3 cut(s)	149, 455, 496
Alw26I	GTCTC	1 cut(s)	662
AlwI	GGATC	1 cut(s)	90
Aor13HI	TCCGGA	1 cut(s)	394
AoxI	GGCC	1 cut(s)	348
ApeKI	GCWGC	2 cut(s)	455, 493
AspS9I	GGNCC	1 cut(s)	532
AsuHPI	GGTGA	1 cut(s)	491
AvaII	GGWCC	1 cut(s)	532
BanI	GGYRCC	1 cut(s)	56
BbsI	GAAGAC	1 cut(s)	101
BbvI	GCAGC	2 cut(s)	442, 505
BccI	CCATC	3 cut(s)	252, 280, 601
BceAI	ACGGC	1 cut(s)	249
BcoDI	GTCTC	1 cut(s)	662
BcuI	ACTAGT	2 cut(s)	115, 179
BfaI	CTAG	3 cut(s)	111, 116, 180
BfmI	CTRYAG	2 cut(s)	22, 538
BglII	AGATCT	1 cut(s)	418
BisI	GCNGC	2 cut(s)	456, 494
BlsI	GCNGC	2 cut(s)	457, 495
Bme18I	GGWCC	1 cut(s)	532
BmgT120I	GGNCC	1 cut(s)	532
BmiI	GGNNCC	4 cut(s)	58, 310, 393, 414
BmsI	GCATC	1 cut(s)	553
BpiI	GAAGAC	1 cut(s)	101
BpmI	CTGGAG	1 cut(s)	399
BpuEI	CTTGAG	1 cut(s)	518
BsaHI	GRCGYC	1 cut(s)	585
BsaJI	CCNNGG	2 cut(s)	60, 576
BsaWI	WCCGGW	1 cut(s)	394
Bsc4I	CCNNNNNNNGG	2 cut(s)	267, 401
Bse1I	ACTGG	1 cut(s)	231
BseAI	TCCGGA	1 cut(s)	394
BseDI	CCNNGG	2 cut(s)	60, 576
BseGI	GGATG	1 cut(s)	572
BseLI	CCNNNNNNNGG	2 cut(s)	267, 401
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	231
BseRI	GAGGAG	1 cut(s)	480
BseXI	GCAGC	2 cut(s)	442, 505
BshFI	GGCC	1 cut(s)	350
BshNI	GGYRCC	1 cut(s)	56
BsiSI	CCGG	1 cut(s)	395
BslFI	GGGAC	1 cut(s)	528
BslI	CCNNNNNNNGG	2 cut(s)	267, 401
BsmAI	GTCTC	1 cut(s)	662
BsmFI	GGGAC	1 cut(s)	528
BsnI	GGCC	1 cut(s)	350
Bsp13I	TCCGGA	1 cut(s)	394
Bsp143I	GATC	4 cut(s)	82, 278, 418, 555
Bsp19I	CCATGG	1 cut(s)	576
BspANI	GGCC	1 cut(s)	350
BspCNI	CTCAG	1 cut(s)	142
BspEI	TCCGGA	1 cut(s)	394
BspLI	GGNNCC	4 cut(s)	58, 310, 393, 414
BspMAI	CTGCAG	1 cut(s)	542
BspPI	GGATC	1 cut(s)	90
BspT107I	GGYRCC	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	231
BssECI	CCNNGG	2 cut(s)	60, 576
BssMI	GATC	4 cut(s)	82, 278, 418, 555
BssNI	GRCGYC	1 cut(s)	585
BssT1I	CCWWGG	2 cut(s)	60, 576
Bst4CI	ACNGT	5 cut(s)	23, 105, 329, 597, 620
Bst6I	CTCTTC	1 cut(s)	269
BstACI	GRCGYC	1 cut(s)	585
BstC8I	GCNNGC	1 cut(s)	262
BstDEI	CTNAG	2 cut(s)	29, 150
BstDSI	CCRYGG	1 cut(s)	576
BstF5I	GGATG	1 cut(s)	572
BstKTI	GATC	4 cut(s)	85, 281, 421, 558
BstMAI	GTCTC	1 cut(s)	662
BstMBI	GATC	4 cut(s)	82, 278, 418, 555
BstNSI	RCATGY	1 cut(s)	633
BstSFI	CTRYAG	2 cut(s)	22, 538
BstV1I	GCAGC	2 cut(s)	442, 505
BstV2I	GAAGAC	1 cut(s)	101
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
BsuRI	GGCC	1 cut(s)	350
BtgI	CCRYGG	1 cut(s)	576
BtsCI	GGATG	1 cut(s)	572
Cac8I	GCNNGC	1 cut(s)	262
Cfr13I	GGNCC	1 cut(s)	532
Csp6I	GTAC	2 cut(s)	430, 611
CspCI	CAANNNNNGTGG	2 cut(s)	301, 336
CviAII	CATG	3 cut(s)	577, 630, 654
CviQI	GTAC	2 cut(s)	430, 611
DdeI	CTNAG	2 cut(s)	29, 150
DpnI	GATC	4 cut(s)	84, 280, 420, 557
DpnII	GATC	4 cut(s)	82, 278, 418, 555
DrdI	GACNNNNNNGTC	1 cut(s)	103
DseDI	GACNNNNNNGTC	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	269
EarI	CTCTTC	1 cut(s)	269
Eco130I	CCWWGG	2 cut(s)	60, 576
Eco32I	GATATC	2 cut(s)	198, 376
Eco47I	GGWCC	1 cut(s)	532
EcoO109I	RGGNCCY	1 cut(s)	532
EcoRV	GATATC	2 cut(s)	198, 376
EcoT14I	CCWWGG	2 cut(s)	60, 576
ErhI	CCWWGG	2 cut(s)	60, 576
FaeI	CATG	3 cut(s)	580, 633, 657
FaiI	YATR	9 cut(s)	205, 237, 440, 474, 560, 578, 623, 631, 655
FaqI	GGGAC	1 cut(s)	528
FatI	CATG	3 cut(s)	576, 629, 653
Fnu4HI	GCNGC	2 cut(s)	456, 494
FokI	GGATG	1 cut(s)	559
Fsp4HI	GCNGC	2 cut(s)	456, 494
FspBI	CTAG	3 cut(s)	111, 116, 180
GluI	GCNGC	2 cut(s)	456, 494
GsuI	CTGGAG	1 cut(s)	399
HaeIII	GGCC	1 cut(s)	350
HapII	CCGG	1 cut(s)	395
Hin1I	GRCGYC	1 cut(s)	585
Hin1II	CATG	3 cut(s)	580, 633, 657
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	2 cut(s)	47, 218
HpaII	CCGG	1 cut(s)	395
HphI	GGTGA	1 cut(s)	491
Hpy166II	GTNNAC	2 cut(s)	325, 430
Hpy188I	TCNGA	3 cut(s)	18, 130, 507
Hpy188III	TCNNGA	5 cut(s)	51, 71, 167, 395, 416
Hpy8I	GTNNAC	2 cut(s)	325, 430
Hpy99I	CGWCG	1 cut(s)	590
HpyAV	CCTTC	3 cut(s)	68, 505, 632
HpyCH4III	ACNGT	5 cut(s)	23, 105, 329, 597, 620
HpyCH4IV	ACGT	1 cut(s)	585
HpyCH4V	TGCA	2 cut(s)	540, 601
HpyF3I	CTNAG	2 cut(s)	29, 150
HpySE526I	ACGT	1 cut(s)	585
Hsp92I	GRCGYC	1 cut(s)	585
Hsp92II	CATG	3 cut(s)	580, 633, 657
Kpn2I	TCCGGA	1 cut(s)	394
Kzo9I	GATC	4 cut(s)	82, 278, 418, 555
LmnI	GCTCC	2 cut(s)	397, 418
Lsp1109I	GCAGC	2 cut(s)	442, 505
LweI	GCATC	1 cut(s)	553
MaeI	CTAG	3 cut(s)	111, 116, 180
MaeII	ACGT	1 cut(s)	585
MaeIII	GTNAC	2 cut(s)	118, 518
MalI	GATC	4 cut(s)	84, 280, 420, 557
MboI	GATC	4 cut(s)	82, 278, 418, 555
MboII	GAAGA	5 cut(s)	106, 192, 286, 520, 565
MflI	RGATCY	1 cut(s)	418
MluCI	AATT	1 cut(s)	296
MmeI	TCCRAC	1 cut(s)	237
MroI	TCCGGA	1 cut(s)	394
MseI	TTAA	1 cut(s)	670
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	1 cut(s)	395
NcoI	CCATGG	1 cut(s)	576
NdeII	GATC	4 cut(s)	82, 278, 418, 555
NlaIII	CATG	3 cut(s)	580, 633, 657
NlaIV	GGNNCC	4 cut(s)	58, 310, 393, 414
NmeAIII	GCCGAG	1 cut(s)	659
NmuCI	GTSAC	2 cut(s)	118, 518
NspI	RCATGY	1 cut(s)	633
PfeI	GAWTC	2 cut(s)	47, 218
PflFI	GACNNNGTC	1 cut(s)	103
PflMI	CCANNNNNTGG	1 cut(s)	267
PkrI	GCNGC	2 cut(s)	457, 495
PpuMI	RGGWCCY	1 cut(s)	532
Psp5II	RGGWCCY	1 cut(s)	532
PspN4I	GGNNCC	4 cut(s)	58, 310, 393, 414
PspPI	GGNCC	1 cut(s)	532
PspPPI	RGGWCCY	1 cut(s)	532
PstI	CTGCAG	1 cut(s)	542
PsuI	RGATCY	1 cut(s)	418
PsyI	GACNNNGTC	1 cut(s)	103
PvuII	CAGCTG	1 cut(s)	149
RsaI	GTAC	2 cut(s)	431, 612
RsaNI	GTAC	2 cut(s)	430, 611
SaqAI	TTAA	1 cut(s)	670
SatI	GCNGC	2 cut(s)	456, 494
Sau3AI	GATC	4 cut(s)	82, 278, 418, 555
Sau96I	GGNCC	1 cut(s)	532
SfaNI	GCATC	1 cut(s)	553
SfcI	CTRYAG	2 cut(s)	22, 538
SinI	GGWCC	1 cut(s)	532
SmlI	CTYRAG	1 cut(s)	497
SmoI	CTYRAG	1 cut(s)	497
SpeI	ACTAGT	2 cut(s)	115, 179
Sse9I	AATT	1 cut(s)	296
SspMI	CTAG	3 cut(s)	111, 116, 180
StyI	CCWWGG	2 cut(s)	60, 576
TaaI	ACNGT	5 cut(s)	23, 105, 329, 597, 620
TaiI	ACGT	1 cut(s)	588
TaqI	TCGA	2 cut(s)	378, 588
TasI	AATT	1 cut(s)	296
TfiI	GAWTC	2 cut(s)	47, 218
Tru1I	TTAA	1 cut(s)	670
Tru9I	TTAA	1 cut(s)	670
TseFI	GTSAC	2 cut(s)	118, 518
TseI	GCWGC	2 cut(s)	455, 493
Tsp45I	GTSAC	2 cut(s)	118, 518
TspDTI	ATGAA	3 cut(s)	192, 345, 561
Tth111I	GACNNNGTC	1 cut(s)	103
Van91I	CCANNNNNTGG	1 cut(s)	267
VpaK11BI	GGWCC	1 cut(s)	532
XceI	RCATGY	1 cut(s)	633
XspI	CTAG	3 cut(s)	111, 116, 180
ZraI	GACGTC	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.