Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006373

Physical Location & Seq

Genomic Coordinates Reverse (-)

24000476 .. 24001957

Gene Structure 1482 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G59560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGAAACGACTGTTAAAAACTCAAGCAGTGATGGTGAGTGGAAAGTAGTCTTACCTAGTAAAGGAAGACAAGGAAGAAGAAGAAAACCGAAACCTAAAGGTCAAGCAGAAGAAGAAGAGCAACCATGGAAATCAGATGATCTTGAAATTGATCCACAGAGACAAGCAAGACTAAAGCAGAAGATGGAAATCTCTCTGAAGAAAATCGAAAGCTCGAGTTTTTACACAGCATTCTTGGAGCAGCTTAAGTCTCCTGAGGTTTCGAATCAGATTCGCCTCGTGTTAGGGTCTGAAACACAGTTGCAGATGGTGATGTACGGTATAGGTAGCATTGAGTCTTATGAATCTCCGAGGTTTCAGCTGAGCATTGCAATCTTGATGAAGAGAGAGTTTGATTGGGTTGGTGATAACATTGAAGTGTTTGACCCAGTTCTCTCTGCAACTGAATCTAGTTACCTAGAATCTTTGGGATGCAGTGTTCTATCTGTGAATGAGCAAGCTCGTAGGGAAGCTTTAAAGCCTACTCTTTTCTTCATGCCACACTGTGAGGCCAATCTATACAGCAACCTATTGCAAGCAAATTGGAGAATGGATCGACTGTCGAAAATCGCATTGTTTGGGAACAGCTTTCAGATGTATGAGGAGCAAGTTTCATTTGACGCAGAAGTCATCTGTGCTACCAAACGAATCATAGCTGCACAAAGAGTCACAAGCGAGTTTGCTATTGAGACGGAATCAGATGATTATTTTGCAGCATTCCATGATTCAAGCTGGCATTTTTTCAGTTCTGGTATAGATTCGGAGCTGCCATTGTTCGTTTCAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0007602 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009987 GO:0010017 GO:0023052 GO:0042752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051606 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRR1

Protein Analysis

275

Amino Acids

31.47

Weight (kDa)

4.97

Isoelectric Point (pI)

61.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRR1	PF07985	96 - 260	7.5e-43	SRR1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59560 AT5G59560
fragaria_vesca	FvH4_5g25300 FvH4_5g25300 FvH4_5g25300 FvH4_5g25300 FvH4_5g25300
malus_domestica	MD02G1270100.v1.1 MD06G1045900.v1.1
prunus_persica	Prupe.7G009600_v2.0.a1 Prupe.7G009600_v2.0.a1 Prupe.7G009600_v2.0.a1 Prupe.7G009600_v2.0.a1
pyrus_communis	pycom02g23130 pycom06g03890
rosa_chinensis	RchiOBHm_Chr7g0215511
rosa_laevigata	RLG00000002653
rosa_multiflora	Rmu_sc0000898.1_g000109
rosa_roxburghii	Rroxscaffold_3G00244170
rosa_rugosa	Rorug07G0154400 Rorug07G0154500 Rorug07G0154600
rosa_samantha	Rh7AG290500 Rh7BG282700 Rh7CG310500 Rh7DG294300
rosa_wichuraiana	Rw7G024800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	665
AclWI	GGATC	2 cut(s)	146, 600
AcuI	CTGAAG	1 cut(s)	218
AdeI	CACNNNGTG	1 cut(s)	545
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	1 cut(s)	62
AflII	CTTAAG	1 cut(s)	245
AgsI	TTSAA	3 cut(s)	146, 416, 768
AloI	GAACNNNNNNTCC	2 cut(s)	462, 494
AluBI	AGCT	9 cut(s)	213, 244, 361, 500, 512, 627, 695, 771, 805
AluI	AGCT	9 cut(s)	213, 244, 361, 500, 512, 627, 695, 771, 805
Alw26I	GTCTC	3 cut(s)	154, 255, 722
AlwI	GGATC	2 cut(s)	146, 600
Ama87I	CYCGRG	1 cut(s)	214
AoxI	GGCC	1 cut(s)	549
ApeKI	GCWGC	4 cut(s)	241, 695, 752, 805
AsuHPI	GGTGA	3 cut(s)	47, 322, 416
AsuII	TTCGAA	1 cut(s)	263
AvaI	CYCGRG	1 cut(s)	214
AxyI	CCTNAGG	1 cut(s)	255
BauI	CACGAG	1 cut(s)	278
BbsI	GAAGAC	1 cut(s)	73
BbvI	GCAGC	4 cut(s)	253, 682, 764, 792
BccI	CCATC	3 cut(s)	26, 178, 301
BcoDI	GTCTC	3 cut(s)	154, 255, 722
BfaI	CTAG	3 cut(s)	57, 450, 458
BfrI	CTTAAG	1 cut(s)	245
BisI	GCNGC	4 cut(s)	242, 696, 753, 806
BlpI	GCTNAGC	1 cut(s)	362
BlsI	GCNGC	4 cut(s)	243, 697, 754, 807
BmeT110I	CYCGRG	1 cut(s)	214
BmrI	ACTGGG	1 cut(s)	422
BmsI	GCATC	1 cut(s)	461
BmuI	ACTGGG	1 cut(s)	422
BpiI	GAAGAC	1 cut(s)	73
Bpu1102I	GCTNAGC	1 cut(s)	362
Bpu14I	TTCGAA	1 cut(s)	263
BpuEI	CTTGAG	1 cut(s)	7
BsaBI	GATNNNNATC	1 cut(s)	188
BsaJI	CCNNGG	2 cut(s)	125, 350
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
Bse1I	ACTGG	1 cut(s)	428
Bse21I	CCTNAGG	1 cut(s)	255
Bse3DI	GCAATG	1 cut(s)	366
Bse8I	GATNNNNATC	1 cut(s)	188
BseDI	CCNNGG	2 cut(s)	125, 350
BseGI	GGATG	1 cut(s)	476
BseJI	GATNNNNATC	1 cut(s)	188
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseMI	GCAATG	1 cut(s)	366
BseMII	CTCAG	2 cut(s)	246, 353
BseNI	ACTGG	1 cut(s)	428
BseRI	GAGGAG	1 cut(s)	656
BseXI	GCAGC	4 cut(s)	253, 682, 764, 792
BsgI	GTGCAG	1 cut(s)	681
BshFI	GGCC	1 cut(s)	551
BsiHKCI	CYCGRG	1 cut(s)	214
BslI	CCNNNNNNNGG	1 cut(s)	62
BsmAI	GTCTC	3 cut(s)	154, 255, 722
BsmBI	CGTCTC	1 cut(s)	722
BsmI	GAATGC	2 cut(s)	230, 755
BsnI	GGCC	1 cut(s)	551
BsoBI	CYCGRG	1 cut(s)	214
Bsp119I	TTCGAA	1 cut(s)	263
Bsp143I	GATC	3 cut(s)	139, 151, 592
Bsp1720I	GCTNAGC	1 cut(s)	362
Bsp19I	CCATGG	1 cut(s)	125
BspANI	GGCC	1 cut(s)	551
BspCNI	CTCAG	2 cut(s)	247, 354
BspPI	GGATC	2 cut(s)	146, 600
BspQI	GCTCTTC	1 cut(s)	111
BspT104I	TTCGAA	1 cut(s)	263
BspTI	CTTAAG	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	366
BsrI	ACTGG	1 cut(s)	428
BssECI	CCNNGG	2 cut(s)	125, 350
BssMI	GATC	3 cut(s)	139, 151, 592
BssSI	CACGAG	1 cut(s)	278
BssT1I	CCWWGG	1 cut(s)	125
Bst2BI	CACGAG	1 cut(s)	278
Bst4CI	ACNGT	5 cut(s)	13, 300, 320, 545, 600
Bst6I	CTCTTC	2 cut(s)	111, 377
BstAFI	CTTAAG	1 cut(s)	245
BstBI	TTCGAA	1 cut(s)	263
BstC8I	GCNNGC	3 cut(s)	498, 576, 773
BstDEI	CTNAG	2 cut(s)	255, 362
BstDSI	CCRYGG	1 cut(s)	125
BstENI	CCTNNNNNAGG	1 cut(s)	60
BstF5I	GGATG	1 cut(s)	476
BstKTI	GATC	3 cut(s)	142, 154, 595
BstMAI	GTCTC	3 cut(s)	154, 255, 722
BstMBI	GATC	3 cut(s)	139, 151, 592
BstV1I	GCAGC	4 cut(s)	253, 682, 764, 792
BstV2I	GAAGAC	1 cut(s)	73
Bsu36I	CCTNAGG	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	551
BtgI	CCRYGG	1 cut(s)	125
BtsCI	GGATG	1 cut(s)	476
BtsI	GCAGTG	2 cut(s)	34, 481
BtsIMutI	CAGTG	3 cut(s)	34, 481, 541
Cac8I	GCNNGC	3 cut(s)	498, 576, 773
CseI	GACGC	1 cut(s)	668
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	3 cut(s)	126, 535, 761
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	2 cut(s)	255, 362
DpnI	GATC	3 cut(s)	141, 153, 594
DpnII	GATC	3 cut(s)	139, 151, 592
DraI	TTTAAA	1 cut(s)	516
DraIII	CACNNNGTG	1 cut(s)	545
DrdI	GACNNNNNNGTC	1 cut(s)	665
DseDI	GACNNNNNNGTC	1 cut(s)	665
Eam1104I	CTCTTC	2 cut(s)	111, 377
EarI	CTCTTC	2 cut(s)	111, 377
Eco130I	CCWWGG	1 cut(s)	125
Eco57I	CTGAAG	1 cut(s)	218
Eco81I	CCTNAGG	1 cut(s)	255
Eco88I	CYCGRG	1 cut(s)	214
EcoNI	CCTNNNNNAGG	1 cut(s)	60
EcoT14I	CCWWGG	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	125
Esp3I	CGTCTC	1 cut(s)	722
FaeI	CATG	3 cut(s)	129, 538, 764
FaiI	YATR	9 cut(s)	127, 323, 342, 536, 559, 639, 692, 762, 794
FatI	CATG	3 cut(s)	125, 534, 760
Fnu4HI	GCNGC	4 cut(s)	242, 696, 753, 806
FokI	GGATG	1 cut(s)	483
Fsp4HI	GCNGC	4 cut(s)	242, 696, 753, 806
FspBI	CTAG	3 cut(s)	57, 450, 458
GluI	GCNGC	4 cut(s)	242, 696, 753, 806
HaeIII	GGCC	1 cut(s)	551
HgaI	GACGC	1 cut(s)	668
Hin1II	CATG	3 cut(s)	129, 538, 764
HindIII	AAGCTT	1 cut(s)	510
HphI	GGTGA	3 cut(s)	47, 322, 416
Hpy188I	TCNGA	9 cut(s)	136, 198, 270, 292, 351, 633, 739, 802, 823
Hpy188III	TCNNGA	3 cut(s)	143, 254, 376
HpyCH4III	ACNGT	5 cut(s)	13, 300, 320, 545, 600
HpyCH4V	TGCA	7 cut(s)	304, 371, 440, 474, 574, 698, 752
HpyF3I	CTNAG	2 cut(s)	255, 362
Hsp92II	CATG	3 cut(s)	129, 538, 764
Kzo9I	GATC	3 cut(s)	139, 151, 592
LguI	GCTCTTC	1 cut(s)	111
LmnI	GCTCC	3 cut(s)	238, 643, 802
LpnPI	CCDG	4 cut(s)	267, 441, 757, 774
Lsp1109I	GCAGC	4 cut(s)	253, 682, 764, 792
LweI	GCATC	1 cut(s)	461
MaeI	CTAG	3 cut(s)	57, 450, 458
MaeIII	GTNAC	2 cut(s)	452, 706
MalI	GATC	3 cut(s)	141, 153, 594
MboI	GATC	3 cut(s)	139, 151, 592
MluCI	AATT	2 cut(s)	147, 580
MlyI	GAGTC	2 cut(s)	344, 714
MnlI	CCTC	5 cut(s)	250, 287, 345, 541, 634
MseI	TTAA	3 cut(s)	15, 246, 515
MslI	CAYNNNNRTG	1 cut(s)	416
MspA1I	CMGCKG	1 cut(s)	361
MspCI	CTTAAG	1 cut(s)	245
Mva1269I	GAATGC	2 cut(s)	230, 755
NcoI	CCATGG	1 cut(s)	125
NdeII	GATC	3 cut(s)	139, 151, 592
NlaIII	CATG	3 cut(s)	129, 538, 764
NmuCI	GTSAC	1 cut(s)	706
NspV	TTCGAA	1 cut(s)	263
PaeR7I	CTCGAG	1 cut(s)	214
PciSI	GCTCTTC	1 cut(s)	111
PctI	GAATGC	2 cut(s)	230, 755
PfeI	GAWTC	9 cut(s)	265, 271, 344, 446, 461, 687, 734, 764, 797
PkrI	GCNGC	4 cut(s)	243, 697, 754, 807
PleI	GAGTC	2 cut(s)	343, 713
PpsI	GAGTC	2 cut(s)	343, 713
PspXI	VCTCGAGB	1 cut(s)	214
PvuII	CAGCTG	1 cut(s)	361
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
RseI	CAYNNNNRTG	1 cut(s)	416
SapI	GCTCTTC	1 cut(s)	111
SaqAI	TTAA	3 cut(s)	15, 246, 515
SatI	GCNGC	4 cut(s)	242, 696, 753, 806
Sau3AI	GATC	3 cut(s)	139, 151, 592
SchI	GAGTC	2 cut(s)	344, 714
SfaNI	GCATC	1 cut(s)	461
Sfr274I	CTCGAG	1 cut(s)	214
SfuI	TTCGAA	1 cut(s)	263
SlaI	CTCGAG	1 cut(s)	214
SmiMI	CAYNNNNRTG	1 cut(s)	416
SmlI	CTYRAG	3 cut(s)	22, 214, 245
SmoI	CTYRAG	3 cut(s)	22, 214, 245
Sse9I	AATT	2 cut(s)	147, 580
SspMI	CTAG	3 cut(s)	57, 450, 458
StyI	CCWWGG	1 cut(s)	125
TaaI	ACNGT	5 cut(s)	13, 300, 320, 545, 600
TaqI	TCGA	5 cut(s)	207, 215, 263, 595, 602
TasI	AATT	2 cut(s)	147, 580
TfiI	GAWTC	9 cut(s)	265, 271, 344, 446, 461, 687, 734, 764, 797
Tru1I	TTAA	3 cut(s)	15, 246, 515
Tru9I	TTAA	3 cut(s)	15, 246, 515
TscAI	CASTG	3 cut(s)	34, 481, 548
TseFI	GTSAC	1 cut(s)	706
TseI	GCWGC	4 cut(s)	241, 695, 752, 805
Tsp45I	GTSAC	1 cut(s)	706
TspDTI	ATGAA	4 cut(s)	357, 395, 523, 642
TspGWI	ACGGA	1 cut(s)	746
TspRI	CASTG	3 cut(s)	34, 481, 548
Vha464I	CTTAAG	1 cut(s)	245
XagI	CCTNNNNNAGG	1 cut(s)	60
XhoI	CTCGAG	1 cut(s)	214
XspI	CTAG	3 cut(s)	57, 450, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.