Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006373

Physical Location & Seq

Genomic Coordinates Reverse (-)

12229348 .. 12230641

Gene Structure 1294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0154600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCAGAGAAGAAACAGCAGACCTATGCATCAGCAACTGGCTACTCCAGAACTACTGACCATGAATCGGCACCCTTCCAAACCGACGAGGAGCTCAAACGCCAGAAGAGGATCAAGTTGTTTACCTATATTGGTATTTTCATTGTGTTTCAGATCGTAGTGATGACTGTGTTTGGACTCACCGTGATGAAGGTCAAGACCCCAAAGGCTAGGTGGGGGGAGATAAGTGTTGAAACCCTCAACTCTGTTCCTGCAACACCTTCGTTCGACACAAAGTTCACAACCCAGATAAGGATCAAGAACACAAACTGGGGTCCTTACAAGTTTGATGCAGGTACTGCCACATTTTTGTACCAAGGTGCTATAATTGGGCAGGTTGCTATCCCTAAGAGCAAGGCCGGGATGCGTTCCACCAAGAAGATCGATGTTGAGGTGACTTTGAATACTAATGCCTTGTCAAGCAGTTCCACTCTTGGAACTGAATTGAGCAGCGGGGTGTTGACGCTGACTAGCCAAGTTCAATTGAAAGGAAAAGTTGAGTTGATGCTTATAATGAAGAAGAATAAGAATGCCTCCATGGACTGCACTATAGTATTTGATTTGTCAGCAAAGACGGTCAAAAGCTTAACATGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0007602 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009987 GO:0010017 GO:0023052 GO:0042752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051606 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRR1

Protein Analysis

212

Amino Acids

23.41

Weight (kDa)

9.76

Isoelectric Point (pI)

26.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	97 - 196	3.9e-06	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59560 AT5G59560
fragaria_vesca	FvH4_5g25300 FvH4_5g25300 FvH4_5g25300 FvH4_5g25300 FvH4_5g25300
malus_domestica	MD02G1270100.v1.1 MD06G1045900.v1.1
prunus_persica	Prupe.7G009600_v2.0.a1 Prupe.7G009600_v2.0.a1 Prupe.7G009600_v2.0.a1 Prupe.7G009600_v2.0.a1
pyrus_communis	pycom02g23130 pycom06g03890
rosa_chinensis	RchiOBHm_Chr7g0215511
rosa_laevigata	RLG00000002653
rosa_multiflora	Rmu_sc0000898.1_g000109
rosa_roxburghii	Rroxscaffold_3G00244170
rosa_rugosa	Rorug07G0154400 Rorug07G0154500 Rorug07G0154600
rosa_samantha	Rh7AG290500 Rh7BG282700 Rh7CG310500 Rh7DG294300
rosa_wichuraiana	Rw7G024800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	551
Acc36I	ACCTGC	2 cut(s)	323, 364
AccB1I	GGYRCC	1 cut(s)	70
AciI	CCGC	1 cut(s)	492
AclWI	GGATC	2 cut(s)	119, 302
AfaI	GTAC	2 cut(s)	337, 353
AfiI	CCNNNNNNNGG	2 cut(s)	67, 291
AgsI	TTSAA	4 cut(s)	233, 442, 521, 526
AluBI	AGCT	2 cut(s)	94, 624
AluI	AGCT	2 cut(s)	94, 624
Alw21I	GWGCWC	1 cut(s)	96
AlwI	GGATC	2 cut(s)	119, 302
AlwNI	CAGNNNCTG	2 cut(s)	38, 338
AoxI	GGCC	1 cut(s)	396
ApeKI	GCWGC	1 cut(s)	489
AspS9I	GGNCC	1 cut(s)	314
AsuC2I	CCSGG	1 cut(s)	400
AsuHPI	GGTGA	2 cut(s)	172, 445
AvaII	GGWCC	1 cut(s)	314
BanI	GGYRCC	1 cut(s)	70
BanII	GRGCYC	1 cut(s)	96
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	1 cut(s)	501
BcgI	CGANNNNNNTGC	2 cut(s)	243, 277
BcnI	CCSGG	1 cut(s)	400
BfaI	CTAG	2 cut(s)	210, 510
BfmI	CTRYAG	1 cut(s)	588
BfuAI	ACCTGC	2 cut(s)	323, 364
BisI	GCNGC	1 cut(s)	490
BlsI	GCNGC	1 cut(s)	491
Bme1390I	CCNGG	1 cut(s)	400
Bme18I	GGWCC	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	314
BmiI	GGNNCC	2 cut(s)	72, 315
BmrFI	CCNGG	1 cut(s)	400
BmrI	ACTGGG	1 cut(s)	319
BmsI	GCATC	4 cut(s)	38, 319, 393, 534
BmuI	ACTGGG	1 cut(s)	319
BpmI	CTGGAG	1 cut(s)	31
BpuMI	CCSGG	1 cut(s)	400
Bsa29I	ATCGAT	1 cut(s)	423
BsaBI	GATNNNNATC	1 cut(s)	293
BsaJI	CCNNGG	2 cut(s)	355, 576
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 291
Bse1I	ACTGG	2 cut(s)	43, 314
Bse8I	GATNNNNATC	1 cut(s)	293
BseCI	ATCGAT	1 cut(s)	423
BseDI	CCNNGG	2 cut(s)	355, 576
BseGI	GGATG	1 cut(s)	408
BseJI	GATNNNNATC	1 cut(s)	293
BseLI	CCNNNNNNNGG	2 cut(s)	67, 291
BseNI	ACTGG	2 cut(s)	43, 314
BseRI	GAGGAG	1 cut(s)	104
BseXI	GCAGC	1 cut(s)	501
BsgI	GTGCAG	1 cut(s)	568
BshFI	GGCC	1 cut(s)	398
BshNI	GGYRCC	1 cut(s)	70
BshVI	ATCGAT	1 cut(s)	423
BsiHKAI	GWGCWC	1 cut(s)	96
BsiSI	CCGG	1 cut(s)	399
BslI	CCNNNNNNNGG	2 cut(s)	67, 291
BsmI	GAATGC	1 cut(s)	574
BsnI	GGCC	1 cut(s)	398
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	4 cut(s)	111, 153, 294, 420
Bsp19I	CCATGG	1 cut(s)	576
BspACI	CCGC	1 cut(s)	492
BspANI	GGCC	1 cut(s)	398
BspDI	ATCGAT	1 cut(s)	423
BspLI	GGNNCC	2 cut(s)	72, 315
BspMI	ACCTGC	2 cut(s)	323, 364
BspPI	GGATC	2 cut(s)	119, 302
BspT107I	GGYRCC	1 cut(s)	70
BsrI	ACTGG	2 cut(s)	43, 314
BssECI	CCNNGG	2 cut(s)	355, 576
BssMI	GATC	4 cut(s)	111, 153, 294, 420
BssT1I	CCWWGG	2 cut(s)	355, 576
Bst4CI	ACNGT	3 cut(s)	169, 184, 616
Bst6I	CTCTTC	1 cut(s)	101
BstAPI	GCANNNNNTGC	1 cut(s)	338
BstDEI	CTNAG	1 cut(s)	387
BstDSI	CCRYGG	1 cut(s)	576
BstF5I	GGATG	1 cut(s)	408
BstKTI	GATC	4 cut(s)	114, 156, 297, 423
BstMBI	GATC	4 cut(s)	111, 153, 294, 420
BstMWI	GCNNNNNNNGC	2 cut(s)	338, 630
BstNSI	RCATGY	1 cut(s)	633
BstSCI	CCNGG	1 cut(s)	398
BstSFI	CTRYAG	1 cut(s)	588
BstV1I	GCAGC	1 cut(s)	501
Bsu15I	ATCGAT	1 cut(s)	423
BsuRI	GGCC	1 cut(s)	398
BsuTUI	ATCGAT	1 cut(s)	423
BtgI	CCRYGG	1 cut(s)	576
BtsCI	GGATG	1 cut(s)	408
BveI	ACCTGC	2 cut(s)	323, 364
CaiI	CAGNNNCTG	2 cut(s)	38, 338
Cfr13I	GGNCC	1 cut(s)	314
ClaI	ATCGAT	1 cut(s)	423
CseI	GACGC	1 cut(s)	511
Csp6I	GTAC	2 cut(s)	336, 352
CviAII	CATG	3 cut(s)	62, 577, 630
CviJI	RGCY	6 cut(s)	42, 94, 209, 398, 513, 624
CviKI_1	RGCY	6 cut(s)	42, 94, 209, 398, 513, 624
CviQI	GTAC	2 cut(s)	336, 352
DdeI	CTNAG	1 cut(s)	387
DpnI	GATC	4 cut(s)	113, 155, 296, 422
DpnII	GATC	4 cut(s)	111, 153, 294, 420
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
Ecl136II	GAGCTC	1 cut(s)	94
Eco130I	CCWWGG	2 cut(s)	355, 576
Eco24I	GRGCYC	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	314
Eco53kI	GAGCTC	1 cut(s)	94
EcoICRI	GAGCTC	1 cut(s)	94
EcoO109I	RGGNCCY	1 cut(s)	314
EcoT14I	CCWWGG	2 cut(s)	355, 576
EcoT22I	ATGCAT	1 cut(s)	31
EcoT38I	GRGCYC	1 cut(s)	96
ErhI	CCWWGG	2 cut(s)	355, 576
FaeI	CATG	3 cut(s)	65, 580, 633
FaiI	YATR	8 cut(s)	27, 63, 129, 365, 551, 578, 590, 631
FatI	CATG	3 cut(s)	61, 576, 629
FauI	CCCGC	1 cut(s)	485
Fnu4HI	GCNGC	1 cut(s)	490
FokI	GGATG	1 cut(s)	415
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	1 cut(s)	490
FspBI	CTAG	2 cut(s)	210, 510
GluI	GCNGC	1 cut(s)	490
GsuI	CTGGAG	1 cut(s)	31
HaeIII	GGCC	1 cut(s)	398
HapII	CCGG	1 cut(s)	399
HgaI	GACGC	1 cut(s)	511
Hin1II	CATG	3 cut(s)	65, 580, 633
HincII	GTYRAC	1 cut(s)	501
HindII	GTYRAC	1 cut(s)	501
HindIII	AAGCTT	1 cut(s)	622
HinfI	GANTC	2 cut(s)	65, 177
HpaII	CCGG	1 cut(s)	399
HphI	GGTGA	2 cut(s)	172, 445
Hpy166II	GTNNAC	3 cut(s)	123, 279, 501
Hpy188I	TCNGA	1 cut(s)	153
Hpy188III	TCNNGA	3 cut(s)	48, 196, 298
Hpy8I	GTNNAC	3 cut(s)	123, 279, 501
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	3 cut(s)	85, 184, 270
HpyCH4III	ACNGT	3 cut(s)	169, 184, 616
HpyCH4V	TGCA	5 cut(s)	29, 254, 332, 585, 633
HpyF10VI	GCNNNNNNNGC	2 cut(s)	338, 630
HpyF3I	CTNAG	1 cut(s)	387
Hsp92II	CATG	3 cut(s)	65, 580, 633
Kzo9I	GATC	4 cut(s)	111, 153, 294, 420
LmnI	GCTCC	1 cut(s)	91
LpnPI	CCDG	9 cut(s)	24, 61, 116, 264, 295, 299, 318, 359, 412
Lsp1109I	GCAGC	1 cut(s)	501
LweI	GCATC	4 cut(s)	38, 319, 393, 534
MaeI	CTAG	2 cut(s)	210, 510
MaeIII	GTNAC	1 cut(s)	433
MalI	GATC	4 cut(s)	113, 155, 296, 422
MboI	GATC	4 cut(s)	111, 153, 294, 420
MboII	GAAGA	5 cut(s)	22, 118, 430, 568, 571
MfeI	CAATTG	1 cut(s)	521
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	3 cut(s)	366, 482, 521
MlyI	GAGTC	1 cut(s)	171
MnlI	CCTC	5 cut(s)	82, 102, 248, 424, 583
Mph1103I	ATGCAT	1 cut(s)	31
MseI	TTAA	1 cut(s)	626
MslI	CAYNNNNRTG	2 cut(s)	185, 634
MspA1I	CMGCKG	1 cut(s)	492
MspI	CCGG	1 cut(s)	399
MspR9I	CCNGG	1 cut(s)	400
MunI	CAATTG	1 cut(s)	521
Mva1269I	GAATGC	1 cut(s)	574
MwoI	GCNNNNNNNGC	2 cut(s)	338, 630
NciI	CCSGG	1 cut(s)	400
NcoI	CCATGG	1 cut(s)	576
NdeII	GATC	4 cut(s)	111, 153, 294, 420
NlaIII	CATG	3 cut(s)	65, 580, 633
NlaIV	GGNNCC	2 cut(s)	72, 315
NmuCI	GTSAC	1 cut(s)	433
NsiI	ATGCAT	1 cut(s)	31
NspI	RCATGY	1 cut(s)	633
PctI	GAATGC	1 cut(s)	574
PfeI	GAWTC	1 cut(s)	65
PkrI	GCNGC	1 cut(s)	491
PleI	GAGTC	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	171
PpuMI	RGGWCCY	1 cut(s)	314
PsiI	TTATAA	1 cut(s)	551
Psp124BI	GAGCTC	1 cut(s)	96
Psp5II	RGGWCCY	1 cut(s)	314
PspN4I	GGNNCC	2 cut(s)	72, 315
PspPI	GGNCC	1 cut(s)	314
PspPPI	RGGWCCY	1 cut(s)	314
PstNI	CAGNNNCTG	2 cut(s)	38, 338
RsaI	GTAC	2 cut(s)	337, 353
RsaNI	GTAC	2 cut(s)	336, 352
RseI	CAYNNNNRTG	2 cut(s)	185, 634
SacI	GAGCTC	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	626
SatI	GCNGC	1 cut(s)	490
Sau3AI	GATC	4 cut(s)	111, 153, 294, 420
Sau96I	GGNCC	1 cut(s)	314
SchI	GAGTC	1 cut(s)	171
ScrFI	CCNGG	1 cut(s)	400
SduI	GDGCHC	1 cut(s)	96
SfaNI	GCATC	4 cut(s)	38, 319, 393, 534
SfcI	CTRYAG	1 cut(s)	588
SinI	GGWCC	1 cut(s)	314
SmiMI	CAYNNNNRTG	2 cut(s)	185, 634
Sse9I	AATT	3 cut(s)	366, 482, 521
SsiI	CCGC	1 cut(s)	492
SspMI	CTAG	2 cut(s)	210, 510
SstI	GAGCTC	1 cut(s)	96
StyD4I	CCNGG	1 cut(s)	398
StyI	CCWWGG	2 cut(s)	355, 576
TaaI	ACNGT	3 cut(s)	169, 184, 616
TaqI	TCGA	2 cut(s)	267, 423
TasI	AATT	3 cut(s)	366, 482, 521
TfiI	GAWTC	1 cut(s)	65
Tru1I	TTAA	1 cut(s)	626
Tru9I	TTAA	1 cut(s)	626
TseFI	GTSAC	1 cut(s)	433
TseI	GCWGC	1 cut(s)	489
Tsp45I	GTSAC	1 cut(s)	433
TspDTI	ATGAA	4 cut(s)	78, 130, 203, 569
VpaK11BI	GGWCC	1 cut(s)	314
XceI	RCATGY	1 cut(s)	633
XcmI	CCANNNNNNNNNTGG	1 cut(s)	210
XspI	CTAG	2 cut(s)	210, 510
Zsp2I	ATGCAT	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.