Rh7CG310500

Protein SENSITIVITY TO RED LIGHT REDUCED

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0006373
Physical Location & Seq
Forward (+)
32851534 .. 32859010
7477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG310500.1

Sequence Viewer

Length: 843 bp
ATGGCATCTTCTGCAAAGACTCTCGTTGCTCCAGGTACATTAAATGGAGACTGGACAGTTGTTTCATCTCGTCGTGGAAGACAAAGAAGAAATCCTCCCATACTGAAAAGTCTTGTAGAGAAACAGCAACAACAACAAACTTGGGCTCCAACTGATATTGAAATCAATTTTGTTCGAGAATCAAAATTGATGCAGAAGATACAGATCTGTATGAAGAAATTGGAGCTTTCTCAATTCTATCTTACCTTGCTGGATCAAATGCAAACTCCAGAGATGATGAATTGCTTCCATAGAGTTTTAAGTTCTGAGTTGAAGATGAAGATGGTAATATACGGCATAGGCAGCATTGAATCATATGAATCCCCTCGATTGCAGTTGAGCCTCGCCATCTTGTTGAAAAGAAGGTTCAATTGGATTGGAGATATAGAGGTGTTTGATCCTATACTTTCTTCCACAGAATCCCGGGTTTTGGAAGCTCTTGGTTGCTCTGTGTTATCTATTAATGAGCAAGGTCGGCGTGAGGTTAAAAAACCAACGATGTTTTTCATGCCACATTGTGAGGCTGAGTTATATGATAATCTTTTACAAGCGAATTGGGGAGTGCGGCAGTTGAATTGTATAGTATTGTTTGGGAATAGCTTTCAGACATATGAGCAGCATCTGTTAGAGTTCAAGAACTCAGCTATCATTCACTCCACCAACTATATCCTGGCTGTCCGAAGATTCACAAATGAATTTAGTATCAAGACAGTTTCAGATGATTATTTTGGTGCTTTTCATGATTCAAGTTGGCAATTTTTCAGCCCTGTCCTTGAAACAGAGATGCAGTTGAGCAATTGCTGA

Protein Analysis

280

Amino Acids

32.42

Weight (kDa)

7.62

Isoelectric Point (pI)

51.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRR1 PF07985 101 - 266 1.6e-42 SRR1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 604
AclWI GGATC 2 cut(s) 261, 431
AcsI RAATTY 1 cut(s) 734
AdeI CACNNNGTG 1 cut(s) 557
AfaI GTAC 1 cut(s) 37
AfiI CCNNNNNNNGG 1 cut(s) 469
AgsI TTSAA 9 cut(s) 161, 313, 350, 397, 409, 613, 673, 786, 815
AjnI CCWGG 2 cut(s) 31, 708
AjuI GAANNNNNNNTTGG 2 cut(s) 394, 426
AluBI AGCT 4 cut(s) 226, 476, 639, 683
AluI AGCT 4 cut(s) 226, 476, 639, 683
Alw26I GTCTC 1 cut(s) 42
AlwI GGATC 2 cut(s) 261, 431
AlwNI CAGNNNCTG 1 cut(s) 661
Ama87I CYCGRG 1 cut(s) 462
ApeKI GCWGC 2 cut(s) 342, 655
ApoI RAATTY 1 cut(s) 734
AseI ATTAAT 1 cut(s) 501
Asp700I GAANNNNTTC 1 cut(s) 284
AsuC2I CCSGG 2 cut(s) 463, 464
AvaI CYCGRG 1 cut(s) 462
BanII GRGCYC 1 cut(s) 148
BbsI GAAGAC 1 cut(s) 85
BbvI GCAGC 2 cut(s) 354, 667
BccI CCATC 2 cut(s) 316, 395
BceAI ACGGC 1 cut(s) 349
BciT130I CCWGG 2 cut(s) 33, 710
BcnI CCSGG 2 cut(s) 463, 464
BcoDI GTCTC 1 cut(s) 42
BglII AGATCT 1 cut(s) 204
BisI GCNGC 3 cut(s) 343, 605, 656
BlsI GCNGC 3 cut(s) 344, 606, 657
Bme1390I CCNGG 4 cut(s) 33, 463, 464, 710
BmeT110I CYCGRG 1 cut(s) 462
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 4 cut(s) 33, 463, 464, 710
BmsI GCATC 4 cut(s) 14, 180, 667, 813
BpiI GAAGAC 1 cut(s) 85
BpmI CTGGAG 2 cut(s) 15, 252
BpuMI CCSGG 2 cut(s) 463, 464
BsaBI GATNNNNATC 1 cut(s) 203
BsaJI CCNNGG 1 cut(s) 462
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bsc4I CCNNNNNNNGG 1 cut(s) 469
Bse1I ACTGG 1 cut(s) 56
Bse8I GATNNNNATC 1 cut(s) 203
BseBI CCWGG 2 cut(s) 33, 710
BseDI CCNNGG 1 cut(s) 462
BseJI GATNNNNATC 1 cut(s) 203
BseLI CCNNNNNNNGG 1 cut(s) 469
BseMII CTCAG 3 cut(s) 297, 555, 693
BseNI ACTGG 1 cut(s) 56
BseXI GCAGC 2 cut(s) 354, 667
BsiHKCI CYCGRG 1 cut(s) 462
BsiSI CCGG 1 cut(s) 463
BslI CCNNNNNNNGG 1 cut(s) 469
BsmAI GTCTC 1 cut(s) 42
BsoBI CYCGRG 1 cut(s) 462
Bsp1286I GDGCHC 1 cut(s) 148
Bsp143I GATC 3 cut(s) 204, 253, 436
BspACI CCGC 1 cut(s) 604
BspCNI CTCAG 3 cut(s) 298, 556, 692
BspHI TCATGA 1 cut(s) 778
BspLI GGNNCC 1 cut(s) 147
BspPI GGATC 2 cut(s) 261, 431
BsrI ACTGG 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 462
BssMI GATC 3 cut(s) 204, 253, 436
Bst2UI CCWGG 2 cut(s) 33, 710
Bst4CI ACNGT 2 cut(s) 58, 751
BstAPI GCANNNNNTGC 1 cut(s) 11
BstDEI CTNAG 3 cut(s) 306, 564, 679
BstKTI GATC 3 cut(s) 207, 256, 439
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 3 cut(s) 204, 253, 436
BstMWI GCNNNNNNNGC 3 cut(s) 11, 342, 514
BstNI CCWGG 2 cut(s) 33, 710
BstSCI CCNGG 4 cut(s) 31, 461, 462, 708
BstV1I GCAGC 2 cut(s) 354, 667
BstV2I GAAGAC 1 cut(s) 85
BstX2I RGATCY 1 cut(s) 204
BstYI RGATCY 1 cut(s) 204
CaiI CAGNNNCTG 1 cut(s) 661
CciI TCATGA 1 cut(s) 778
Cfr9I CCCGGG 1 cut(s) 462
Csp6I GTAC 1 cut(s) 36
CviAII CATG 2 cut(s) 547, 779
CviJI RGCY 9 cut(s) 146, 226, 381, 476, 563, 639, 683, 713, 804
CviKI_1 RGCY 9 cut(s) 146, 226, 381, 476, 563, 639, 683, 713, 804
CviQI GTAC 1 cut(s) 36
DdeI CTNAG 3 cut(s) 306, 564, 679
DpnI GATC 3 cut(s) 206, 255, 438
DpnII GATC 3 cut(s) 204, 253, 436
DraIII CACNNNGTG 1 cut(s) 557
Eco24I GRGCYC 1 cut(s) 148
Eco88I CYCGRG 1 cut(s) 462
EcoRII CCWGG 2 cut(s) 31, 708
EcoT38I GRGCYC 1 cut(s) 148
FaeI CATG 2 cut(s) 550, 782
FatI CATG 2 cut(s) 546, 778
FauNDI CATATG 2 cut(s) 355, 649
Fnu4HI GCNGC 3 cut(s) 343, 605, 656
FriOI GRGCYC 1 cut(s) 148
Fsp4HI GCNGC 3 cut(s) 343, 605, 656
GluI GCNGC 3 cut(s) 343, 605, 656
GsuI CTGGAG 2 cut(s) 15, 252
HapII CCGG 1 cut(s) 463
Hin1II CATG 2 cut(s) 550, 782
HinfI GANTC 7 cut(s) 19, 179, 350, 359, 458, 723, 782
HpaII CCGG 1 cut(s) 463
Hpy188I TCNGA 4 cut(s) 307, 645, 719, 757
Hpy188III TCNNGA 5 cut(s) 176, 269, 673, 745, 779
Hpy99I CGWCG 1 cut(s) 75
HpyAV CCTTC 1 cut(s) 396
HpyCH4III ACNGT 2 cut(s) 58, 751
HpyCH4V TGCA 5 cut(s) 14, 193, 262, 373, 826
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 342, 514
HpyF3I CTNAG 3 cut(s) 306, 564, 679
Hsp92II CATG 2 cut(s) 550, 782
Kzo9I GATC 3 cut(s) 204, 253, 436
LmnI GCTCC 3 cut(s) 34, 151, 223
LpnPI CCDG 9 cut(s) 18, 37, 45, 236, 282, 476, 695, 722, 819
Lsp1109I GCAGC 2 cut(s) 354, 667
LweI GCATC 4 cut(s) 14, 180, 667, 813
MalI GATC 3 cut(s) 206, 255, 438
MboI GATC 3 cut(s) 204, 253, 436
MboII GAAGA 8 cut(s) 90, 99, 208, 226, 325, 331, 441, 732
MfeI CAATTG 2 cut(s) 409, 835
MflI RGATCY 1 cut(s) 204
MhlI GDGCHC 1 cut(s) 148
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 6 cut(s) 105, 375, 392, 421, 514, 553
MroXI GAANNNNTTC 1 cut(s) 284
MseI TTAA 4 cut(s) 41, 299, 501, 525
MspI CCGG 1 cut(s) 463
MspR9I CCNGG 4 cut(s) 33, 463, 464, 710
MunI CAATTG 2 cut(s) 409, 835
MvaI CCWGG 2 cut(s) 33, 710
MwoI GCNNNNNNNGC 3 cut(s) 11, 342, 514
NciI CCSGG 2 cut(s) 463, 464
NdeI CATATG 2 cut(s) 355, 649
NdeII GATC 3 cut(s) 204, 253, 436
NlaIII CATG 2 cut(s) 550, 782
NlaIV GGNNCC 1 cut(s) 147
PagI TCATGA 1 cut(s) 778
PdmI GAANNNNTTC 1 cut(s) 284
PfeI GAWTC 6 cut(s) 179, 350, 359, 458, 723, 782
PkrI GCNGC 3 cut(s) 344, 606, 657
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PshBI ATTAAT 1 cut(s) 501
Psp6I CCWGG 2 cut(s) 31, 708
PspGI CCWGG 2 cut(s) 31, 708
PspN4I GGNNCC 1 cut(s) 147
PstNI CAGNNNCTG 1 cut(s) 661
PsuI RGATCY 1 cut(s) 204
RsaI GTAC 1 cut(s) 37
RsaNI GTAC 1 cut(s) 36
SaqAI TTAA 4 cut(s) 41, 299, 501, 525
SatI GCNGC 3 cut(s) 343, 605, 656
Sau3AI GATC 3 cut(s) 204, 253, 436
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 4 cut(s) 33, 463, 464, 710
SduI GDGCHC 1 cut(s) 148
SfaNI GCATC 4 cut(s) 14, 180, 667, 813
SmaI CCCGGG 1 cut(s) 464
SsiI CCGC 1 cut(s) 604
StyD4I CCNGG 4 cut(s) 31, 461, 462, 708
TaaI ACNGT 2 cut(s) 58, 751
TaqI TCGA 2 cut(s) 175, 367
TauI GCSGC 1 cut(s) 607
TfiI GAWTC 6 cut(s) 179, 350, 359, 458, 723, 782
Tru1I TTAA 4 cut(s) 41, 299, 501, 525
Tru9I TTAA 4 cut(s) 41, 299, 501, 525
TseI GCWGC 2 cut(s) 342, 655
TspDTI ATGAA 8 cut(s) 54, 227, 293, 332, 372, 535, 747, 767
TspMI CCCGGG 1 cut(s) 462
VspI ATTAAT 1 cut(s) 501
XapI RAATTY 1 cut(s) 734
XcmI CCANNNNNNNNNTGG 1 cut(s) 706
XmaI CCCGGG 1 cut(s) 462
XmnI GAANNNNTTC 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.