Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000898.1

Orthogroup ID

OG0006373

Physical Location & Seq

Genomic Coordinates Reverse (-)

504781 .. 505623

Gene Structure 843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000898.1_g000109.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

atggcatcttctgcaaagactctcgttgctccaggtacattaaatggagactggacagttgtttcatctcgtcgtggaagacagagaagaaatcctcccatactgaaaagtcttgtagagaaacagcaacaacaagaaacttgggctccaactgatattgaaatcaattttgttcgagaatcaaaattgatgcagaagatacagatctgtatgaagaaattggagctttctcaattttatcttaccttgctggatcaaatgcaaactccagagatgatgaattgcttccatagagttttaagttccgagttgaagatgaagatggtaatatatggcataggcagcattgaatcatatgaatcccctcgattgcagttgagcctcgccatcttgttgaaaagaaggttcaattggattggagatatagaggtgtttgatcctatactttcttccacagaatctcgggttttggaagctcttggttgctctgtgttatctgttaatgagcaaggtaggcgtgaggttaaaaaaccaacgatgtttttcatgccacattgtgaggctgagttatatgataatcttttacaagcgaattggggagtgcggcagttgaattgtatagtattgtttgggaatagctttcagacatatgagcagcatctgttagagttcaagaactcagcaatcattcactccaccaactatatcctggctgtccgaagattcacaaatgaatttagtatcgagacagtttcagatgattattttggtgcttttcatgattcaagttggcaatttttcagccccgtccttgaaacagagatgcagttgagcaattgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0007602 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009987 GO:0010017 GO:0023052 GO:0042752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051606 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRR1

Protein Analysis

280

Amino Acids

32.4

Weight (kDa)

6.25

Isoelectric Point (pI)

53.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59560 AT5G59560
fragaria_vesca	FvH4_5g25300 FvH4_5g25300 FvH4_5g25300 FvH4_5g25300 FvH4_5g25300
malus_domestica	MD02G1270100.v1.1 MD06G1045900.v1.1
prunus_persica	Prupe.7G009600_v2.0.a1 Prupe.7G009600_v2.0.a1 Prupe.7G009600_v2.0.a1 Prupe.7G009600_v2.0.a1
pyrus_communis	pycom02g23130 pycom06g03890
rosa_chinensis	RchiOBHm_Chr7g0215511
rosa_laevigata	RLG00000002653
rosa_multiflora	Rmu_sc0000898.1_g000109
rosa_roxburghii	Rroxscaffold_3G00244170
rosa_rugosa	Rorug07G0154400 Rorug07G0154500 Rorug07G0154600
rosa_samantha	Rh7AG290500 Rh7BG282700 Rh7CG310500 Rh7DG294300
rosa_wichuraiana	Rw7G024800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	604
AclWI	GGATC	2 cut(s)	261, 431
AcsI	RAATTY	1 cut(s)	734
AdeI	CACNNNGTG	1 cut(s)	557
AfaI	GTAC	1 cut(s)	37
AgsI	TTSAA	9 cut(s)	161, 313, 350, 397, 409, 613, 673, 786, 815
AjnI	CCWGG	2 cut(s)	31, 708
AjuI	GAANNNNNNNTTGG	2 cut(s)	394, 426
AluBI	AGCT	3 cut(s)	226, 476, 639
AluI	AGCT	3 cut(s)	226, 476, 639
Alw26I	GTCTC	2 cut(s)	42, 740
AlwI	GGATC	2 cut(s)	261, 431
AlwNI	CAGNNNCTG	1 cut(s)	661
Ama87I	CYCGRG	1 cut(s)	462
ApeKI	GCWGC	2 cut(s)	342, 655
ApoI	RAATTY	1 cut(s)	734
Asp700I	GAANNNNTTC	1 cut(s)	284
AvaI	CYCGRG	1 cut(s)	462
BanII	GRGCYC	1 cut(s)	148
BbsI	GAAGAC	1 cut(s)	85
BbvI	GCAGC	2 cut(s)	354, 667
BccI	CCATC	2 cut(s)	316, 395
BciT130I	CCWGG	2 cut(s)	33, 710
BcoDI	GTCTC	2 cut(s)	42, 740
BglII	AGATCT	1 cut(s)	204
BisI	GCNGC	3 cut(s)	343, 605, 656
BlsI	GCNGC	3 cut(s)	344, 606, 657
Bme1390I	CCNGG	2 cut(s)	33, 710
BmeT110I	CYCGRG	1 cut(s)	462
BmiI	GGNNCC	1 cut(s)	147
BmrFI	CCNGG	2 cut(s)	33, 710
BmsI	GCATC	4 cut(s)	14, 180, 667, 813
BpiI	GAAGAC	1 cut(s)	85
BpmI	CTGGAG	2 cut(s)	15, 252
BsaBI	GATNNNNATC	1 cut(s)	203
BsaXI	ACNNNNNCTCC	2 cut(s)	130, 160
Bse1I	ACTGG	1 cut(s)	56
Bse8I	GATNNNNATC	1 cut(s)	203
BseBI	CCWGG	2 cut(s)	33, 710
BseJI	GATNNNNATC	1 cut(s)	203
BseMII	CTCAG	2 cut(s)	555, 693
BseNI	ACTGG	1 cut(s)	56
BseXI	GCAGC	2 cut(s)	354, 667
BsiHKCI	CYCGRG	1 cut(s)	462
BsmAI	GTCTC	2 cut(s)	42, 740
BsoBI	CYCGRG	1 cut(s)	462
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	3 cut(s)	204, 253, 436
BspACI	CCGC	1 cut(s)	604
BspCNI	CTCAG	2 cut(s)	556, 692
BspHI	TCATGA	1 cut(s)	778
BspLI	GGNNCC	1 cut(s)	147
BspPI	GGATC	2 cut(s)	261, 431
BsrI	ACTGG	1 cut(s)	56
BssMI	GATC	3 cut(s)	204, 253, 436
Bst2UI	CCWGG	2 cut(s)	33, 710
Bst4CI	ACNGT	2 cut(s)	58, 751
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstDEI	CTNAG	2 cut(s)	564, 679
BstKTI	GATC	3 cut(s)	207, 256, 439
BstMAI	GTCTC	2 cut(s)	42, 740
BstMBI	GATC	3 cut(s)	204, 253, 436
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 342, 514
BstNI	CCWGG	2 cut(s)	33, 710
BstSCI	CCNGG	2 cut(s)	31, 708
BstV1I	GCAGC	2 cut(s)	354, 667
BstV2I	GAAGAC	1 cut(s)	85
BstX2I	RGATCY	1 cut(s)	204
BstYI	RGATCY	1 cut(s)	204
CaiI	CAGNNNCTG	1 cut(s)	661
CciI	TCATGA	1 cut(s)	778
Csp6I	GTAC	1 cut(s)	36
CviAII	CATG	2 cut(s)	547, 779
CviJI	RGCY	8 cut(s)	146, 226, 381, 476, 563, 639, 713, 804
CviKI_1	RGCY	8 cut(s)	146, 226, 381, 476, 563, 639, 713, 804
CviQI	GTAC	1 cut(s)	36
DdeI	CTNAG	2 cut(s)	564, 679
DpnI	GATC	3 cut(s)	206, 255, 438
DpnII	GATC	3 cut(s)	204, 253, 436
DraIII	CACNNNGTG	1 cut(s)	557
Eco24I	GRGCYC	1 cut(s)	148
Eco88I	CYCGRG	1 cut(s)	462
EcoRII	CCWGG	2 cut(s)	31, 708
EcoT38I	GRGCYC	1 cut(s)	148
FaeI	CATG	2 cut(s)	550, 782
FatI	CATG	2 cut(s)	546, 778
FauNDI	CATATG	2 cut(s)	355, 649
Fnu4HI	GCNGC	3 cut(s)	343, 605, 656
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	3 cut(s)	343, 605, 656
GluI	GCNGC	3 cut(s)	343, 605, 656
GsuI	CTGGAG	2 cut(s)	15, 252
Hin1II	CATG	2 cut(s)	550, 782
HinfI	GANTC	7 cut(s)	19, 179, 350, 359, 458, 723, 782
Hpy188I	TCNGA	4 cut(s)	307, 645, 719, 757
Hpy188III	TCNNGA	5 cut(s)	176, 269, 673, 745, 779
Hpy99I	CGWCG	1 cut(s)	75
HpyAV	CCTTC	1 cut(s)	396
HpyCH4III	ACNGT	2 cut(s)	58, 751
HpyCH4V	TGCA	5 cut(s)	14, 193, 262, 373, 826
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 342, 514
HpyF3I	CTNAG	2 cut(s)	564, 679
Hsp92II	CATG	2 cut(s)	550, 782
Kzo9I	GATC	3 cut(s)	204, 253, 436
LmnI	GCTCC	3 cut(s)	34, 151, 223
LpnPI	CCDG	7 cut(s)	18, 37, 45, 236, 282, 695, 722
Lsp1109I	GCAGC	2 cut(s)	354, 667
LweI	GCATC	4 cut(s)	14, 180, 667, 813
MalI	GATC	3 cut(s)	206, 255, 438
MboI	GATC	3 cut(s)	204, 253, 436
MboII	GAAGA	8 cut(s)	90, 99, 208, 226, 325, 331, 441, 732
MfeI	CAATTG	2 cut(s)	409, 835
MflI	RGATCY	1 cut(s)	204
MhlI	GDGCHC	1 cut(s)	148
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	173
MnlI	CCTC	6 cut(s)	105, 375, 392, 421, 514, 553
MroXI	GAANNNNTTC	1 cut(s)	284
MseI	TTAA	4 cut(s)	41, 299, 501, 525
MspR9I	CCNGG	2 cut(s)	33, 710
MunI	CAATTG	2 cut(s)	409, 835
MvaI	CCWGG	2 cut(s)	33, 710
MwoI	GCNNNNNNNGC	3 cut(s)	11, 342, 514
NdeI	CATATG	2 cut(s)	355, 649
NdeII	GATC	3 cut(s)	204, 253, 436
NlaIII	CATG	2 cut(s)	550, 782
NlaIV	GGNNCC	1 cut(s)	147
PagI	TCATGA	1 cut(s)	778
PdmI	GAANNNNTTC	1 cut(s)	284
PfeI	GAWTC	6 cut(s)	179, 350, 359, 458, 723, 782
PkrI	GCNGC	3 cut(s)	344, 606, 657
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Psp6I	CCWGG	2 cut(s)	31, 708
PspGI	CCWGG	2 cut(s)	31, 708
PspN4I	GGNNCC	1 cut(s)	147
PstNI	CAGNNNCTG	1 cut(s)	661
PsuI	RGATCY	1 cut(s)	204
RsaI	GTAC	1 cut(s)	37
RsaNI	GTAC	1 cut(s)	36
SaqAI	TTAA	4 cut(s)	41, 299, 501, 525
SatI	GCNGC	3 cut(s)	343, 605, 656
Sau3AI	GATC	3 cut(s)	204, 253, 436
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	2 cut(s)	33, 710
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	9 cut(s)	37, 228, 248, 407, 432, 478, 514, 525, 641
SfaNI	GCATC	4 cut(s)	14, 180, 667, 813
SsiI	CCGC	1 cut(s)	604
StyD4I	CCNGG	2 cut(s)	31, 708
TaaI	ACNGT	2 cut(s)	58, 751
TaqI	TCGA	3 cut(s)	175, 367, 744
TauI	GCSGC	1 cut(s)	607
TfiI	GAWTC	6 cut(s)	179, 350, 359, 458, 723, 782
Tru1I	TTAA	4 cut(s)	41, 299, 501, 525
Tru9I	TTAA	4 cut(s)	41, 299, 501, 525
TseI	GCWGC	2 cut(s)	342, 655
TspDTI	ATGAA	8 cut(s)	54, 227, 293, 332, 372, 535, 747, 767
XapI	RAATTY	1 cut(s)	734
XcmI	CCANNNNNNNNNTGG	1 cut(s)	706
XmnI	GAANNNNTTC	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.